downloading reverse dependencies ‘activatr’, ‘assignR’, ‘birdring’, ‘cffdrs’, ‘cholera’, ‘ClimClass’, ‘CoordinateCleaner’, ‘diveMove’, ‘dynamAedes’, ‘echogram’, ‘EcoCleanR’, ‘ecocomDP’, ‘epiflows’, ‘ezTrack’, ‘FEA’, ‘fireexposuR’, ‘flightplot’, ‘FLightR’, ‘fuzzyjoin’, ‘fxTWAPLS’, ‘gecko’, ‘geohabnet’, ‘geomerge’, ‘geonetwork’, ‘graticule’, ‘GWLelast’, ‘himach’, ‘lakemorpho’, ‘latbias’, ‘m2b’, ‘mapmisc’, ‘marmap’, ‘mobr’, ‘move’, ‘moveHMM’, ‘multilink’, ‘o2geosocial’, ‘ODMeans’, ‘palaeoverse’, ‘PAMmisc’, ‘PAMpal’, ‘PAMscapes’, ‘peacesciencer’, ‘PracTools’, ‘rbgm’, ‘red’, ‘reddPrec’, ‘remotePARTS’, ‘reslr’, ‘resourcecode’, ‘rSPARCS’, ‘rStrava’, ‘satin’, ‘SDLfilter’, ‘sdsfun’, ‘SeaSondeR’, ‘skytrackr’, ‘SNMA’, ‘SongEvo’, ‘spherepc’, ‘stampr’, ‘stplanr’, ‘stppSim’, ‘sugarbag’, ‘swaRm’, ‘swaRmverse’, ‘TCHazaRds’, ‘track2KBA’, ‘uavRmp’, ‘walkboutr’, ‘WaterBalanceR’, ‘waver’, ‘amt’, ‘barrks’, ‘BiodiversityR’, ‘cercospoRa’, ‘epizootic’, ‘GGally’, ‘growthTrendR’, ‘hutils’, ‘lwgeom’, ‘Mapinguari’, ‘memgene’, ‘momentuHMM’, ‘nvctr’, ‘pctax’, ‘rayshader’, ‘RWmisc’, ‘sftrack’, ‘sociome’, ‘sugarglider’ trying URL 'file:///data/Repositories/CRAN/src/contrib/activatr_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/assignR_2.4.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/birdring_1.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cffdrs_1.9.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cholera_0.9.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ClimClass_2.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CoordinateCleaner_3.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/diveMove_1.6.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/dynamAedes_2.2.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/echogram_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EcoCleanR_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ecocomDP_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/epiflows_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ezTrack_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FEA_0.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fireexposuR_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/flightplot_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FLightR_0.5.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fuzzyjoin_0.1.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fxTWAPLS_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gecko_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/geohabnet_2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/geomerge_0.3.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/geonetwork_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/graticule_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/GWLelast_1.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/himach_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/lakemorpho_1.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/latbias_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/m2b_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mapmisc_2.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/marmap_1.0.12.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mobr_3.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/move_4.2.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/moveHMM_1.12.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/multilink_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/o2geosocial_1.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ODMeans_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/palaeoverse_1.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PAMmisc_1.12.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PAMpal_1.5.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PAMscapes_0.15.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/peacesciencer_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PracTools_1.7.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rbgm_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/red_1.6.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/reddPrec_3.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/remotePARTS_1.0.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/reslr_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/resourcecode_0.5.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rSPARCS_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rStrava_1.3.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/satin_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SDLfilter_2.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sdsfun_0.8.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SeaSondeR_0.2.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/skytrackr_2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SNMA_0.1.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SongEvo_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/spherepc_0.1.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/stampr_0.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/stplanr_1.2.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/stppSim_1.3.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sugarbag_0.1.10.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/swaRm_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/swaRmverse_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TCHazaRds_1.1.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/track2KBA_1.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/uavRmp_0.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/walkboutr_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/WaterBalanceR_0.1.19.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/waver_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/amt_0.3.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/barrks_1.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/BiodiversityR_2.17-4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cercospoRa_0.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/epizootic_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/GGally_2.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/growthTrendR_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/hutils_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/lwgeom_0.2-15.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Mapinguari_2.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/memgene_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/momentuHMM_1.5.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/nvctr_0.1.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pctax_0.1.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rayshader_0.37.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RWmisc_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sftrack_0.5.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sociome_3.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sugarglider_1.0.3.tar.gz' installing dependencies ‘airportr’, ‘airports’, ‘ALDEx2’, ‘ambient’, ‘amt’, ‘BAT’, ‘BayesianTools’, ‘bcpa’, ‘bgmfiles’, ‘biomod2’, ‘BreakPoints’, ‘chemometrics’, ‘conicfit’, ‘constants’, ‘cppRouting’, ‘crawl’, ‘ctmm’, ‘cyclestreets’, ‘dodgr’, ‘eesim’, ‘EMbC’, ‘EML’, ‘emld’, ‘ENMeval’, ‘envirem’, ‘epicontacts’, ‘exifr’, ‘geonames’, ‘geosphere’, ‘gggenes’, ‘ggtreeExtra’, ‘googleway’, ‘h3jsr’, ‘HistData’, ‘hutilscpp’, ‘isard’, ‘JOPS’, ‘lazyData’, ‘link2GI’, ‘log4r’, ‘mapsapi’, ‘maxlike’, ‘MetaNet’, ‘Mfuzz’, ‘mockthat’, ‘move’, ‘moveHMM’, ‘mregions2’, ‘multidplyr’, ‘MultiscaleDTM’, ‘neonOS’, ‘neonUtilities’, ‘NST’, ‘od’, ‘openeo’, ‘opentripplanner’, ‘osrm’, ‘otuSummary’, ‘outbreaker2’, ‘ozmaps’, ‘paleotree’, ‘pals’, ‘PamBinaries’, ‘PAMmisc’, ‘pct’, ‘pcutils’, ‘phyloseqGraphTest’, ‘poems’, ‘pps’, ‘predicts’, ‘ptinpoly’, ‘pvclust’, ‘qdapDictionaries’, ‘qmap’, ‘raybevel’, ‘rayimage’, ‘rayrender’, ‘rayvertex’, ‘rcheology’, ‘rdwd’, ‘reader’, ‘readHAC’, ‘RecordLinkage’, ‘red’, ‘reproj’, ‘rerddap’, ‘resourcecodedata’, ‘ridigbio’, ‘Rlof’, ‘robis’, ‘RSelenium’, ‘rsgeo’, ‘samplingbook’, ‘scagnostics’, ‘sdmpredictors’, ‘sfdep’, ‘SiMRiv’, ‘skylight’, ‘socialmixr’, ‘solartime’, ‘sparr’, ‘spatialEco’, ‘spex’, ‘spgwr’, ‘sphereplot’, ‘stevemisc’, ‘suntools’, ‘swaRm’, ‘tanaka’, ‘terrainmeshr’, ‘trackdf’, ‘uniReg’, ‘usmap’, ‘USpopcenters’, ‘vegan3d’, ‘zetadiv’ Warning: package ‘rsgeo’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘rebird’, ‘rvertnet’, ‘leafpm’, ‘palr’, ‘binman’, ‘spocc’, ‘BIEN’, ‘abc.data’, ‘widgetTools’, ‘DynDoc’, ‘mapiso’, ‘SEL’, ‘httpcache’, ‘mapedit’, ‘NCmisc’, ‘usmapdata’, ‘PROJ’, ‘quadmesh’, ‘Gmedian’, ‘wpp2017’, ‘stplanr’, ‘wdman’, ‘rangeModelMetadata’, ‘palinsol’, ‘abc’, ‘fossil’, ‘metRology’, ‘som’, ‘hutils’, ‘iCAMP’, ‘DirichletReg’, ‘zCompositions’, ‘tkWidgets’, ‘RcppCGAL’, ‘oz’ begin installing package ‘rebird’ begin installing package ‘rvertnet’ begin installing package ‘leafpm’ begin installing package ‘palr’ begin installing package ‘binman’ begin installing package ‘BIEN’ begin installing package ‘abc.data’ begin installing package ‘widgetTools’ begin installing package ‘mapiso’ begin installing package ‘DynDoc’ begin installing package ‘SEL’ begin installing package ‘httpcache’ begin installing package ‘NCmisc’ begin installing package ‘usmapdata’ begin installing package ‘PROJ’ begin installing package ‘Gmedian’ begin installing package ‘wpp2017’ begin installing package ‘palinsol’ begin installing package ‘fossil’ begin installing package ‘metRology’ begin installing package ‘som’ begin installing package ‘hutils’ begin installing package ‘DirichletReg’ begin installing package ‘zCompositions’ begin installing package ‘RcppCGAL’ begin installing package ‘oz’ begin installing package ‘lazyData’ begin installing package ‘HistData’ * installing *source* package ‘abc.data’ ... ** this is package ‘abc.data’ version ‘1.1’ ** package ‘abc.data’ successfully unpacked and MD5 sums checked ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abc.data) begin installing package ‘eesim’ * installing *source* package ‘leafpm’ ... ** this is package ‘leafpm’ version ‘0.1.0’ ** package ‘leafpm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leafpm) begin installing package ‘readHAC’ * installing *source* package ‘lazyData’ ... ** this is package ‘lazyData’ version ‘1.1.0’ ** package ‘lazyData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lazyData) begin installing package ‘pals’ * installing *source* package ‘oz’ ... ** this is package ‘oz’ version ‘1.0-22’ ** package ‘oz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oz) begin installing package ‘mregions2’ * installing *source* package ‘httpcache’ ... ** this is package ‘httpcache’ version ‘1.2.0’ ** package ‘httpcache’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpcache) begin installing package ‘sdmpredictors’ * installing *source* package ‘usmapdata’ ... ** this is package ‘usmapdata’ version ‘1.0.0’ ** package ‘usmapdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usmapdata) begin installing package ‘ridigbio’ * installing *source* package ‘palr’ ... ** this is package ‘palr’ version ‘0.4.0’ ** package ‘palr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (palr) begin installing package ‘emld’ * installing *source* package ‘wpp2017’ ... ** this is package ‘wpp2017’ version ‘1.2-3’ ** package ‘wpp2017’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wpp2017) begin installing package ‘neonUtilities’ * installing *source* package ‘HistData’ ... ** this is package ‘HistData’ version ‘1.0.0’ ** package ‘HistData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HistData) begin installing package ‘neonOS’ * installing *source* package ‘binman’ ... ** this is package ‘binman’ version ‘0.1.3’ ** package ‘binman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (binman) begin installing package ‘epicontacts’ * installing *source* package ‘SEL’ ... ** this is package ‘SEL’ version ‘1.0-4’ ** package ‘SEL’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4kuAc4/R.INSTALL2f21477a5a93a/SEL/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SEL-init.c -o SEL-init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c knotave.c -o knotave.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SEL.so SEL-init.o knotave.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4kuAc4/R.INSTALL2f21477a5a93a/SEL/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SEL/00new/SEL/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SEL) begin installing package ‘ptinpoly’ * installing *source* package ‘palinsol’ ... ** this is package ‘palinsol’ version ‘1.0’ ** package ‘palinsol’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (palinsol) begin installing package ‘MultiscaleDTM’ * installing *source* package ‘DynDoc’ ... ** this is package ‘DynDoc’ version ‘1.88.0’ ** package ‘DynDoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DynDoc) begin installing package ‘suntools’ * installing *source* package ‘readHAC’ ... ** this is package ‘readHAC’ version ‘1.0’ ** package ‘readHAC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readHAC) begin installing package ‘qdapDictionaries’ * installing *source* package ‘RcppCGAL’ ... ** this is package ‘RcppCGAL’ version ‘6.1’ ** package ‘RcppCGAL’ successfully unpacked and MD5 sums checked ** using staged installation ** preparing to configure package 'RcppCGAL' ... *** configured file: 'R/pkg_state.R.in' => 'R/pkg_state.R' ** finished configure for package 'RcppCGAL' ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppCGAL) begin installing package ‘JOPS’ * installing *source* package ‘som’ ... ** this is package ‘som’ version ‘0.3-5.2’ ** package ‘som’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp201A1o/R.INSTALL2f217c64c5269d/som/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c som.cc -o som.o In file included from tntsupp.h:8, from sub.h:1, from SomParam.h:2, from som.cc:4: tnt/fmat.h: In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*this.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double rect_dist(TNT::Region2D >, TNT::Region2D >)’ at SomParam.h:11:19: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:12:40: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:16:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)’ at som.cc:57:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:32:24: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)’ at som.cc:76:38: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)’ at som.cc:108:1: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o som.so som.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp201A1o/R.INSTALL2f217c64c5269d/som/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-som/00new/som/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (som) begin installing package ‘biomod2’ * installing *source* package ‘mapiso’ ... ** this is package ‘mapiso’ version ‘0.3.0’ ** package ‘mapiso’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapiso) begin installing package ‘mockthat’ * installing *source* package ‘rebird’ ... ** this is package ‘rebird’ version ‘1.3.0’ ** package ‘rebird’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rebird) begin installing package ‘spgwr’ * installing *source* package ‘hutils’ ... ** this is package ‘hutils’ version ‘2.0.0’ ** package ‘hutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hutils) begin installing package ‘cppRouting’ * installing *source* package ‘ridigbio’ ... ** this is package ‘ridigbio’ version ‘0.4.1’ ** package ‘ridigbio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ridigbio) begin installing package ‘airportr’ * installing *source* package ‘NCmisc’ ... ** this is package ‘NCmisc’ version ‘1.3.1’ ** package ‘NCmisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NCmisc) begin installing package ‘geonames’ * installing *source* package ‘neonOS’ ... ** this is package ‘neonOS’ version ‘1.1.0’ ** package ‘neonOS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neonOS) begin installing package ‘bcpa’ * installing *source* package ‘pals’ ... ** this is package ‘pals’ version ‘1.10’ ** package ‘pals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pals) begin installing package ‘solartime’ * installing *source* package ‘fossil’ ... ** this is package ‘fossil’ version ‘0.4.0’ ** package ‘fossil’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fossil) begin installing package ‘RecordLinkage’ * installing *source* package ‘widgetTools’ ... ** this is package ‘widgetTools’ version ‘1.88.0’ ** package ‘widgetTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (widgetTools) begin installing package ‘outbreaker2’ * installing *source* package ‘eesim’ ... ** this is package ‘eesim’ version ‘0.1.0’ ** package ‘eesim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eesim) begin installing package ‘h3jsr’ * installing *source* package ‘DirichletReg’ ... ** this is package ‘DirichletReg’ version ‘0.7-2’ ** package ‘DirichletReg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpddmehx/R.INSTALL2f2181447178b8/DirichletReg/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ddirichlet.c -o ddirichlet.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rdirichlet.c -o rdirichlet.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wght_LL.c -o wght_LL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wght_LL_grad_alternative.c -o wght_LL_grad_alternative.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wght_LL_grad_common.c -o wght_LL_grad_common.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o DirichletReg.so ddirichlet.o init.o rdirichlet.o wght_LL.o wght_LL_grad_alternative.o wght_LL_grad_common.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpddmehx/R.INSTALL2f2181447178b8/DirichletReg/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-DirichletReg/00new/DirichletReg/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DirichletReg) begin installing package ‘paleotree’ * installing *source* package ‘mregions2’ ... ** this is package ‘mregions2’ version ‘1.1.2’ ** package ‘mregions2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to '<' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mregions2) begin installing package ‘PamBinaries’ * installing *source* package ‘epicontacts’ ... ** this is package ‘epicontacts’ version ‘1.1.4’ ** package ‘epicontacts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epicontacts) begin installing package ‘rerddap’ * installing *source* package ‘mockthat’ ... ** this is package ‘mockthat’ version ‘0.2.8’ ** package ‘mockthat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mockthat) begin installing package ‘stevemisc’ * installing *source* package ‘PROJ’ ... ** this is package ‘PROJ’ version ‘0.6.0’ ** package ‘PROJ’ successfully unpacked and MD5 sums checked ** using staged installation checking whether pkg-config knows about proj... yes checking CFLAGS from pkg-config... -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 checking LIBS from pkg-config... checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-15 -std=gnu++20 accepts -g... yes checking how to run the C++ preprocessor... g++-15 -std=gnu++20 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking proj.h usability... yes checking proj.h presence... yes checking for proj.h... yes checking for proj_get_source_crs in -lproj... yes checking for proj_as_wkt in -lproj... yes configure: PROJ6 API available: yes configure: setting CCPFLAGS: -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 configure: setting PROJ_LIBS: -lproj configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDJyzWq/R.INSTALL2f216553f0e518/PROJ/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_proj_crs_text.c -o C_proj_crs_text.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_proj_version.c -o C_proj_version.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c proj-utils.c -o proj-utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-utils.c -o r-utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wk-impl.c -o wk-impl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wk-trans.c -o wk-trans.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/wk/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xptr.c -o xptr.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o PROJ.so C_proj_crs_text.o C_proj_version.o init.o proj-utils.o r-utils.o wk-impl.o wk-trans.o xptr.o -lproj -lproj -lproj -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDJyzWq/R.INSTALL2f216553f0e518/PROJ/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PROJ/00new/PROJ/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PROJ) begin installing package ‘isard’ * installing *source* package ‘emld’ ... ** this is package ‘emld’ version ‘0.5.3’ ** package ‘emld’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emld) begin installing package ‘pps’ * installing *source* package ‘geonames’ ... ** this is package ‘geonames’ version ‘0.999’ ** package ‘geonames’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geonames) begin installing package ‘bgmfiles’ * installing *source* package ‘rvertnet’ ... ** this is package ‘rvertnet’ version ‘0.8.4’ ** package ‘rvertnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvertnet) begin installing package ‘BAT’ * installing *source* package ‘qdapDictionaries’ ... ** this is package ‘qdapDictionaries’ version ‘1.0.7’ ** package ‘qdapDictionaries’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qdapDictionaries) begin installing package ‘predicts’ * installing *source* package ‘suntools’ ... ** this is package ‘suntools’ version ‘1.1.0’ ** package ‘suntools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading in method for ‘crepuscule’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘solarnoon’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘solarpos’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘sunriset’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (suntools) begin installing package ‘qmap’ * installing *source* package ‘solartime’ ... ** this is package ‘solartime’ version ‘0.0.4’ ** package ‘solartime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (solartime) begin installing package ‘BreakPoints’ * installing *source* package ‘pps’ ... ** this is package ‘pps’ version ‘1.0’ ** package ‘pps’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pps) begin installing package ‘resourcecodedata’ * installing *source* package ‘bgmfiles’ ... ** this is package ‘bgmfiles’ version ‘0.1.0’ ** package ‘bgmfiles’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bgmfiles) begin installing package ‘googleway’ * installing *source* package ‘isard’ ... ** this is package ‘isard’ version ‘0.1.0’ ** package ‘isard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isard) begin installing package ‘constants’ * installing *source* package ‘airportr’ ... ** this is package ‘airportr’ version ‘0.1.3’ ** package ‘airportr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (airportr) begin installing package ‘skylight’ * installing *source* package ‘spgwr’ ... ** this is package ‘spgwr’ version ‘0.6-37’ ** package ‘spgwr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWf39fU/R.INSTALL2f2b7c1a7a76cb/spgwr/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gwe.c -o gwe.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o spgwr.so gwe.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWf39fU/R.INSTALL2f2b7c1a7a76cb/spgwr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spgwr/00new/spgwr/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spgwr) begin installing package ‘BayesianTools’ * installing *source* package ‘metRology’ ... ** this is package ‘metRology’ version ‘0.9-29-2’ ** package ‘metRology’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metRology) begin installing package ‘sfdep’ * installing *source* package ‘constants’ ... ** this is package ‘constants’ version ‘2022.0’ ** package ‘constants’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (constants) begin installing package ‘multidplyr’ * installing *source* package ‘zCompositions’ ... ** this is package ‘zCompositions’ version ‘1.6.0’ ** package ‘zCompositions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zCompositions) begin installing package ‘sphereplot’ * installing *source* package ‘BreakPoints’ ... ** this is package ‘BreakPoints’ version ‘1.2’ ** package ‘BreakPoints’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BreakPoints) begin installing package ‘od’ * installing *source* package ‘ptinpoly’ ... ** this is package ‘ptinpoly’ version ‘2.8’ ** package ‘ptinpoly’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVORFho/R.INSTALL2f2949406b9cdd/ptinpoly/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PtInPoly_031009A.cc -o PtInPoly_031009A.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kodtree.cc -o kodtree.o kodtree.cc: In function ‘void sort1ShellFromaTri(int, double (*)[3], int, int (*)[3], int, int (*)[3])’: kodtree.cc:825:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 825 | if(tnb < 0) throw(7); /* JMM : 8/17/2014 : Fix Seg Fault as per B. Ripley and J. Liu */ | ^~ kodtree.cc:826:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 826 | if(trisort[tnb]==0){ | ^~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pinpolyhedronA.cc -o pinpolyhedronA.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ptinpoly.so PtInPoly_031009A.o kodtree.o pinpolyhedronA.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVORFho/R.INSTALL2f2949406b9cdd/ptinpoly/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ptinpoly/00new/ptinpoly/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ptinpoly) begin installing package ‘cyclestreets’ * installing *source* package ‘neonUtilities’ ... ** this is package ‘neonUtilities’ version ‘3.0.3’ ** package ‘neonUtilities’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neonUtilities) begin installing package ‘dodgr’ * installing *source* package ‘rerddap’ ... ** this is package ‘rerddap’ version ‘1.2.3’ ** package ‘rerddap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rerddap) begin installing package ‘mapsapi’ * installing *source* package ‘od’ ... ** this is package ‘od’ version ‘0.5.1’ ** package ‘od’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (od) begin installing package ‘opentripplanner’ * installing *source* package ‘h3jsr’ ... ** this is package ‘h3jsr’ version ‘1.3.1’ ** package ‘h3jsr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (h3jsr) begin installing package ‘SiMRiv’ * installing *source* package ‘sphereplot’ ... ** this is package ‘sphereplot’ version ‘1.5.1’ ** package ‘sphereplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sphereplot) begin installing package ‘sparr’ * installing *source* package ‘cyclestreets’ ... ** this is package ‘cyclestreets’ version ‘1.0.3’ ** package ‘cyclestreets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyclestreets) begin installing package ‘otuSummary’ * installing *source* package ‘PamBinaries’ ... ** this is package ‘PamBinaries’ version ‘1.9.3’ ** package ‘PamBinaries’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PamBinaries) begin installing package ‘trackdf’ * installing *source* package ‘multidplyr’ ... ** this is package ‘multidplyr’ version ‘0.1.4’ ** package ‘multidplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multidplyr) begin installing package ‘log4r’ * installing *source* package ‘mapsapi’ ... ** this is package ‘mapsapi’ version ‘0.5.4’ ** package ‘mapsapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapsapi) begin installing package ‘exifr’ * installing *source* package ‘qmap’ ... ** this is package ‘qmap’ version ‘1.0-6’ ** package ‘qmap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qmap) begin installing package ‘link2GI’ * installing *source* package ‘googleway’ ... ** this is package ‘googleway’ version ‘2.7.8’ ** package ‘googleway’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (googleway) begin installing package ‘spatialEco’ * installing *source* package ‘log4r’ ... ** this is package ‘log4r’ version ‘0.4.4’ ** package ‘log4r’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmCwNUU/R.INSTALL2f34f6216a2e8b/log4r/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c log4r.c -o log4r.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logfmt.c -o logfmt.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o log4r.so log4r.o logfmt.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmCwNUU/R.INSTALL2f34f6216a2e8b/log4r/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-log4r/00new/log4r/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (log4r) begin installing package ‘rdwd’ * installing *source* package ‘opentripplanner’ ... ** this is package ‘opentripplanner’ version ‘0.5.2’ ** package ‘opentripplanner’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (opentripplanner) begin installing package ‘openeo’ * installing *source* package ‘otuSummary’ ... ** this is package ‘otuSummary’ version ‘0.1.2’ ** package ‘otuSummary’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otuSummary) begin installing package ‘vegan3d’ * installing *source* package ‘bcpa’ ... ** this is package ‘bcpa’ version ‘1.3.2’ ** package ‘bcpa’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZQzaL7/R.INSTALL2f2c446fa02502/bcpa/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GetL.cpp -o GetL.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bcpa.so GetL.o RcppExports.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZQzaL7/R.INSTALL2f2c446fa02502/bcpa/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bcpa/00new/bcpa/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcpa) begin installing package ‘maxlike’ * installing *source* package ‘sfdep’ ... ** this is package ‘sfdep’ version ‘0.2.5’ ** package ‘sfdep’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sfdep) begin installing package ‘Rlof’ * installing *source* package ‘exifr’ ... ** this is package ‘exifr’ version ‘0.3.2’ ** package ‘exifr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (exifr) begin installing package ‘pvclust’ * installing *source* package ‘JOPS’ ... ** this is package ‘JOPS’ version ‘0.2.0’ ** package ‘JOPS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JOPS) begin installing package ‘airports’ * installing *source* package ‘Rlof’ ... ** this is package ‘Rlof’ version ‘1.1.3’ ** package ‘Rlof’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHmTqX4/R.INSTALL2f37017659ef4e/Rlof/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distance.c -o distance.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rlof.so distance.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHmTqX4/R.INSTALL2f37017659ef4e/Rlof/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rlof/00new/Rlof/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rlof) begin installing package ‘scagnostics’ * installing *source* package ‘stevemisc’ ... ** this is package ‘stevemisc’ version ‘1.9.0’ ** package ‘stevemisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stevemisc) begin installing package ‘rcheology’ * installing *source* package ‘pvclust’ ... ** this is package ‘pvclust’ version ‘2.2-0’ ** package ‘pvclust’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pvclust) begin installing package ‘crawl’ * installing *source* package ‘trackdf’ ... ** this is package ‘trackdf’ version ‘0.3.3’ ** package ‘trackdf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (trackdf) begin installing package ‘conicfit’ * installing *source* package ‘airports’ ... ** this is package ‘airports’ version ‘0.1.0’ ** package ‘airports’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (airports) begin installing package ‘pcutils’ * installing *source* package ‘scagnostics’ ... ** this is package ‘scagnostics’ version ‘0.2-6’ ** package ‘scagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scagnostics) begin installing package ‘phyloseqGraphTest’ * installing *source* package ‘RecordLinkage’ ... ** this is package ‘RecordLinkage’ version ‘0.4-12.6’ ** package ‘RecordLinkage’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbGNnFy/R.INSTALL2f2cbe6abc0c75/RecordLinkage/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c jarowinkler.c -o jarowinkler.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c levenshtein.c -o levenshtein.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c makeBlockingPairs.c -o makeBlockingPairs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mygllm.c -o mygllm.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c recordlinkage_init.c -o recordlinkage_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c soundex.c -o soundex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sqlite_extensions.c -o sqlite_extensions.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RecordLinkage.so jarowinkler.o levenshtein.o makeBlockingPairs.o mygllm.o recordlinkage_init.o soundex.o sqlite_extensions.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbGNnFy/R.INSTALL2f2cbe6abc0c75/RecordLinkage/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RecordLinkage/00new/RecordLinkage/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RecordLinkage) begin installing package ‘ggtreeExtra’ * installing *source* package ‘conicfit’ ... ** this is package ‘conicfit’ version ‘1.0.4’ ** package ‘conicfit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (conicfit) begin installing package ‘zetadiv’ * installing *source* package ‘vegan3d’ ... ** this is package ‘vegan3d’ version ‘1.4-1’ ** package ‘vegan3d’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vegan3d) begin installing package ‘gggenes’ * installing *source* package ‘resourcecodedata’ ... ** this is package ‘resourcecodedata’ version ‘1.0.0’ ** package ‘resourcecodedata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (resourcecodedata) begin installing package ‘terrainmeshr’ * installing *source* package ‘BIEN’ ... ** this is package ‘BIEN’ version ‘1.2.7’ ** package ‘BIEN’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BIEN) begin installing package ‘rayimage’ * installing *source* package ‘link2GI’ ... ** this is package ‘link2GI’ version ‘0.7-2’ ** package ‘link2GI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (link2GI) begin installing package ‘ambient’ * installing *source* package ‘sdmpredictors’ ... ** this is package ‘sdmpredictors’ version ‘0.2.15’ ** package ‘sdmpredictors’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sdmpredictors) begin installing package ‘USpopcenters’ * installing *source* package ‘rcheology’ ... ** this is package ‘rcheology’ version ‘4.5.2.0’ ** package ‘rcheology’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcheology) begin installing package ‘geosphere’ * installing *source* package ‘sparr’ ... ** this is package ‘sparr’ version ‘2.3-16’ ** package ‘sparr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparr) begin installing package ‘spocc’ * installing *source* package ‘paleotree’ ... ** this is package ‘paleotree’ version ‘3.4.7’ ** package ‘paleotree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paleotree) begin installing package ‘mapedit’ * installing *source* package ‘rdwd’ ... ** this is package ‘rdwd’ version ‘1.9.8’ ** package ‘rdwd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rdwd) begin installing package ‘wdman’ * installing *source* package ‘gggenes’ ... ** this is package ‘gggenes’ version ‘0.6.0’ ** package ‘gggenes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gggenes) begin installing package ‘abc’ * installing *source* package ‘terrainmeshr’ ... ** this is package ‘terrainmeshr’ version ‘1.0.1’ ** package ‘terrainmeshr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJrM1Vf/R.INSTALL2f3aef5e783dfa/terrainmeshr/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c heightmap.cpp -o heightmap.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c triangular_mesh.cpp -o triangular_mesh.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c triangulator.cpp -o triangulator.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o terrainmeshr.so heightmap.o triangular_mesh.o triangulator.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJrM1Vf/R.INSTALL2f3aef5e783dfa/terrainmeshr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-terrainmeshr/00new/terrainmeshr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (terrainmeshr) begin installing package ‘iCAMP’ * installing *source* package ‘pcutils’ ... ** this is package ‘pcutils’ version ‘0.2.8’ ** package ‘pcutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcutils) begin installing package ‘tkWidgets’ * installing *source* package ‘mapedit’ ... ** this is package ‘mapedit’ version ‘0.8.0’ ** package ‘mapedit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapedit) begin installing package ‘tanaka’ * installing *source* package ‘ggtreeExtra’ ... ** this is package ‘ggtreeExtra’ version ‘1.20.1’ ** package ‘ggtreeExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggtreeExtra) begin installing package ‘uniReg’ * installing *source* package ‘wdman’ ... ** this is package ‘wdman’ version ‘0.2.6’ ** package ‘wdman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wdman) begin installing package ‘EML’ * installing *source* package ‘BayesianTools’ ... ** this is package ‘BayesianTools’ version ‘0.1.8’ ** package ‘BayesianTools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmXT0b0/R.INSTALL2f30d732482a33/BayesianTools/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vsem.cpp -o vsem.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BayesianTools.so RcppExports.o init.o vsem.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmXT0b0/R.INSTALL2f30d732482a33/BayesianTools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BayesianTools/00new/BayesianTools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesianTools) begin installing package ‘reader’ * installing *source* package ‘SiMRiv’ ... ** this is package ‘SiMRiv’ version ‘1.0.7’ ** package ‘SiMRiv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmdAcUD/R.INSTALL2f341552a3d1eb/SiMRiv/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c raster-fn.c -o raster-fn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simulate.c -o simulate.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SiMRiv.so init.o misc.o raster-fn.o simulate.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmdAcUD/R.INSTALL2f341552a3d1eb/SiMRiv/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SiMRiv/00new/SiMRiv/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SiMRiv) begin installing package ‘usmap’ * installing *source* package ‘predicts’ ... ** this is package ‘predicts’ version ‘0.1-19’ ** package ‘predicts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (predicts) begin installing package ‘reproj’ * installing *source* package ‘reader’ ... ** this is package ‘reader’ version ‘1.1.0’ ** package ‘reader’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reader) begin installing package ‘EMbC’ * installing *source* package ‘usmap’ ... ** this is package ‘usmap’ version ‘1.0.0’ ** package ‘usmap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usmap) begin installing package ‘socialmixr’ * installing *source* package ‘reproj’ ... ** this is package ‘reproj’ version ‘0.7.0’ ** package ‘reproj’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reproj) begin installing package ‘samplingbook’ * installing *source* package ‘zetadiv’ ... ** this is package ‘zetadiv’ version ‘1.3.0’ ** package ‘zetadiv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zetadiv) begin installing package ‘osrm’ * installing *source* package ‘skylight’ ... ** this is package ‘skylight’ version ‘1.4’ ** package ‘skylight’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRtztgz/R.INSTALL2f30254f0adcc4/skylight/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c skylight.cpp -o skylight.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o skylight.so RcppExports.o skylight.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRtztgz/R.INSTALL2f30254f0adcc4/skylight/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-skylight/00new/skylight/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (skylight) begin installing package ‘envirem’ * installing *source* package ‘maxlike’ ... ** this is package ‘maxlike’ version ‘0.1-12’ ** package ‘maxlike’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maxlike) begin installing package ‘chemometrics’ * installing *source* package ‘uniReg’ ... ** this is package ‘uniReg’ version ‘1.1’ ** package ‘uniReg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (uniReg) begin installing package ‘hutilscpp’ * installing *source* package ‘abc’ ... ** this is package ‘abc’ version ‘2.2.2’ ** package ‘abc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abc) begin installing package ‘ALDEx2’ * installing *source* package ‘spocc’ ... ** this is package ‘spocc’ version ‘1.2.4’ ** package ‘spocc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spocc) begin installing package ‘MetaNet’ * installing *source* package ‘Gmedian’ ... ** this is package ‘Gmedian’ version ‘1.2.7’ ** package ‘Gmedian’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfRgWch/R.INSTALL2f21623dd22f53/Gmedian/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RSpectra/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gmedian.cpp -o Gmedian.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RSpectra/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RSpectra/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Weiszfeld.cpp -o Weiszfeld.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Gmedian.so Gmedian.o RcppExports.o Weiszfeld.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfRgWch/R.INSTALL2f21623dd22f53/Gmedian/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Gmedian/00new/Gmedian/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Gmedian) begin installing package ‘ozmaps’ * installing *source* package ‘EML’ ... ** this is package ‘EML’ version ‘2.0.7’ ** package ‘EML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EML) begin installing package ‘quadmesh’ * installing *source* package ‘tkWidgets’ ... ** this is package ‘tkWidgets’ version ‘1.88.0’ ** package ‘tkWidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tkWidgets) begin installing package ‘rangeModelMetadata’ * installing *source* package ‘osrm’ ... ** this is package ‘osrm’ version ‘5.0.0’ ** package ‘osrm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (osrm) begin installing package ‘robis’ * installing *source* package ‘spatialEco’ ... ** this is package ‘spatialEco’ version ‘2.0-3’ ** package ‘spatialEco’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatialEco) begin installing package ‘RSelenium’ * installing *source* package ‘samplingbook’ ... ** this is package ‘samplingbook’ version ‘1.2.4’ ** package ‘samplingbook’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (samplingbook) begin installing package ‘poems’ * installing *source* package ‘socialmixr’ ... ** this is package ‘socialmixr’ version ‘0.5.1’ ** package ‘socialmixr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (socialmixr) begin installing package ‘Mfuzz’ * installing *source* package ‘phyloseqGraphTest’ ... ** this is package ‘phyloseqGraphTest’ version ‘0.1.1’ ** package ‘phyloseqGraphTest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phyloseqGraphTest) begin installing package ‘ctmm’ * installing *source* package ‘chemometrics’ ... ** this is package ‘chemometrics’ version ‘1.4.4’ ** package ‘chemometrics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chemometrics) * installing *source* package ‘ambient’ ... ** this is package ‘ambient’ version ‘1.0.3’ ** package ‘ambient’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfYjCI0/R.INSTALL2f3b2844d0209a/ambient/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c FastNoise.cpp -o FastNoise.o FastNoise.cpp: In member function ‘FN_DECIMAL FastNoise::GetWhiteNoise(FN_DECIMAL, FN_DECIMAL, FN_DECIMAL, FN_DECIMAL) const’: FastNoise.cpp:498:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 498 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:498:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 498 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:499:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 499 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:499:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 499 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:500:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 500 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:500:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 500 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:501:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 501 | *reinterpret_cast(&w) ^ (*reinterpret_cast(&w) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:501:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 501 | *reinterpret_cast(&w) ^ (*reinterpret_cast(&w) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp: In member function ‘FN_DECIMAL FastNoise::GetWhiteNoise(FN_DECIMAL, FN_DECIMAL, FN_DECIMAL) const’: FastNoise.cpp:507:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 507 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:507:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 507 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:508:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 508 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:508:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 508 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:509:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 509 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:509:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 509 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp: In member function ‘FN_DECIMAL FastNoise::GetWhiteNoise(FN_DECIMAL, FN_DECIMAL) const’: FastNoise.cpp:515:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 515 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:515:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 515 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:516:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 516 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:516:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 516 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp: At global scope: FastNoise.cpp:186:12: warning: ‘int FastAbs(int)’ defined but not used [-Wunused-function] 186 | static int FastAbs(int i) { return abs(i); } | ^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cubic.cpp -o cubic.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c perlin.cpp -o perlin.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simplex.cpp -o simplex.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c value.cpp -o value.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c white.cpp -o white.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c worley.cpp -o worley.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ambient.so FastNoise.o cpp11.o cubic.o perlin.o simplex.o value.o white.o worley.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfYjCI0/R.INSTALL2f3b2844d0209a/ambient/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ambient/00new/ambient/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ambient) * installing *source* package ‘outbreaker2’ ... ** this is package ‘outbreaker2’ version ‘1.1.4’ ** package ‘outbreaker2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkQd6sw/R.INSTALL2f2d29768ff674/outbreaker2/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c internals.cpp -o internals.o internals.cpp: In function ‘Rcpp::IntegerVector cpp_find_descendents(Rcpp::IntegerVector, size_t)’: internals.cpp:114:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 114 | for (size_t j = 0; j < alpha.size(); j++) { | ~~^~~~~~~~~~~~~~ internals.cpp:115:18: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | if (alpha[j] == i) n++; internals.cpp:121:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 121 | for (size_t j = 0; j < alpha.size(); j++) { | ~~^~~~~~~~~~~~~~ internals.cpp:122:18: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 122 | if (alpha[j] == i) { internals.cpp: In function ‘Rcpp::IntegerVector cpp_find_local_cases(Rcpp::IntegerVector, size_t)’: internals.cpp:169:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 169 | for (size_t j = 0; j < desc_i.size(); j++) { | ~~^~~~~~~~~~~~~~~ internals.cpp:178:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 178 | for (size_t j = 0; j < desc_alpha_i.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~ internals.cpp:179:28: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 179 | if ( desc_alpha_i[j] != i) { internals.cpp: In function ‘Rcpp::List cpp_swap_cases(Rcpp::List, size_t)’: internals.cpp:251:21: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | if (alpha_in[j] == i) { internals.cpp:253:28: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 253 | } else if (alpha_in[j] == x) { g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c likelihoods.cpp -o likelihoods.o likelihoods.cpp: In function ‘double cpp_ll_genetic(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:114:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:146:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 146 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp: In function ‘double cpp_ll_timing_infections(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:240:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 240 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:264:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 264 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp: In function ‘double cpp_ll_timing_sampling(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:322:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 322 | if (delay < 1 || delay > f_dens.size()) { | ~~~~~~^~~~~~~~~~~~~~~ likelihoods.cpp:334:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 334 | if (delay < 1 || delay > f_dens.size()) { | ~~~~~~^~~~~~~~~~~~~~~ likelihoods.cpp: In function ‘double cpp_ll_reporting(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:402:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 402 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:415:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 415 | if (kappa[j] < 1 || kappa[j] > K) { g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c moves.cpp -o moves.o moves.cpp: In function ‘Rcpp::List cpp_move_kappa(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::RObject)’: moves.cpp:566:44: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 566 | if (new_kappa[i] < 1 || new_kappa[i] > K) { g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c priors.cpp -o priors.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o outbreaker2.so RcppExports.o internals.o likelihoods.o moves.o priors.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkQd6sw/R.INSTALL2f2d29768ff674/outbreaker2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-outbreaker2/00new/outbreaker2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (outbreaker2) * installing *source* package ‘BAT’ ... ** this is package ‘BAT’ version ‘2.11.0’ ** package ‘BAT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAT) * installing *source* package ‘RSelenium’ ... ** this is package ‘RSelenium’ version ‘1.7.10’ ** package ‘RSelenium’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSelenium) * installing *source* package ‘USpopcenters’ ... ** this is package ‘USpopcenters’ version ‘0.2.0’ ** package ‘USpopcenters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (USpopcenters) * installing *source* package ‘ozmaps’ ... ** this is package ‘ozmaps’ version ‘0.4.5’ ** package ‘ozmaps’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ozmaps) * installing *source* package ‘robis’ ... ** this is package ‘robis’ version ‘2.11.3’ ** package ‘robis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robis) * installing *source* package ‘tanaka’ ... ** this is package ‘tanaka’ version ‘0.4.0’ ** package ‘tanaka’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tanaka) * installing *source* package ‘Mfuzz’ ... ** this is package ‘Mfuzz’ version ‘2.70.0’ ** package ‘Mfuzz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Mfuzz) * installing *source* package ‘iCAMP’ ... ** this is package ‘iCAMP’ version ‘1.5.12’ ** package ‘iCAMP’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iCAMP) begin installing package ‘NST’ * installing *source* package ‘envirem’ ... ** this is package ‘envirem’ version ‘3.1’ ** package ‘envirem’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (envirem) * installing *source* package ‘MetaNet’ ... ** this is package ‘MetaNet’ version ‘0.2.8’ ** package ‘MetaNet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MetaNet) * installing *source* package ‘openeo’ ... ** this is package ‘openeo’ version ‘1.4.1’ ** package ‘openeo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘openeo’ ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openeo) * installing *source* package ‘hutilscpp’ ... ** this is package ‘hutilscpp’ version ‘0.10.10’ ** package ‘hutilscpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2YMn7q/R.INSTALL2f40c22357356a/hutilscpp/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c AnyCharMatch.c -o AnyCharMatch.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c CImplies.c -o CImplies.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c CSquish.c -o CSquish.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_FLIP.c -o C_FLIP.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_Mode.c -o C_Mode.o C_Mode.c: In function ‘C_antiMode’: C_Mode.c:138:12: warning: unused variable ‘N_d’ [-Wunused-variable] 138 | R_xlen_t N_d = xlength(Domain); | ^~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_abs_diff.c -o C_abs_diff.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_character2integer.c -o C_character2integer.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_empty.c -o C_empty.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_lehmer.c -o C_lehmer.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_op2M.c -o C_op2M.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cand3s.c -o Cand3s.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Ccoalesce0.c -o Ccoalesce0.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Ccount_logical.c -o Ccount_logical.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Ccumsum_reset.c -o Ccumsum_reset.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cdivisible.c -o Cdivisible.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cevery_int32.c -o Cevery_int32.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cis_constant.c -o Cis_constant.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cis_sorted.c -o Cis_sorted.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Clgl2raw.c -o Clgl2raw.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cor3s.c -o Cor3s.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cpar_in.c -o Cpar_in.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cpminmax.c -o Cpminmax.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Crange.c -o Crange.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Craw2lgl.c -o Craw2lgl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Csum_isna.c -o Csum_isna.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Csum_raw.c -o Csum_raw.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c CtexParse.c -o CtexParse.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cwhich_16.c -o Cwhich_16.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cwhich_even.c -o Cwhich_even.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cwhich_first.c -o Cwhich_first.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cwhich_isna.c -o Cwhich_isna.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cwhich_last.c -o Cwhich_last.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Cwhich_true_onwards.c -o Cwhich_true_onwards.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ScalarLength.c -o ScalarLength.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c allocate.c -o allocate.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c altrep.c -o altrep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c anyOutside.c -o anyOutside.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c asInteger2.c -o asInteger2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c between.c -o between.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c character.c -o character.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dbl2int.c -o dbl2int.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error-warnings.c -o error-warnings.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extent.c -o extent.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fastmatch_fastmatch.c -o fastmatch_fastmatch.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fmatchp_lgl.c -o fmatchp_lgl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c haversineDistance.c -o haversineDistance.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_seq.c -o is_seq.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_true.c -o is_true.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isntRaw.c -o isntRaw.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logical3.c -o logical3.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c minmax.c -o minmax.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c omp_diagnose.c -o omp_diagnose.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c op_xlen2.c -o op_xlen2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pcg_hash.c -o pcg_hash.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c single_ox_x1_x2.c -o single_ox_x1_x2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c summary3.c -o summary3.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o hutilscpp.so AnyCharMatch.o CImplies.o CSquish.o C_FLIP.o C_Mode.o C_abs_diff.o C_character2integer.o C_empty.o C_lehmer.o C_op2M.o Cand3s.o Ccoalesce0.o Ccount_logical.o Ccumsum_reset.o Cdivisible.o Cevery_int32.o Cis_constant.o Cis_sorted.o Clgl2raw.o Cor3s.o Cpar_in.o Cpminmax.o Crange.o Craw2lgl.o Csum_isna.o Csum_raw.o CtexParse.o Cwhich_16.o Cwhich_even.o Cwhich_first.o Cwhich_isna.o Cwhich_last.o Cwhich_true_onwards.o ScalarLength.o allocate.o altrep.o anyOutside.o asInteger2.o between.o character.o dbl2int.o error-warnings.o extent.o fastmatch_fastmatch.o fmatchp_lgl.o haversineDistance.o init.o is_seq.o is_true.o isntRaw.o logical3.o minmax.o omp_diagnose.o op_xlen2.o pcg_hash.o single_ox_x1_x2.o summary3.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2YMn7q/R.INSTALL2f40c22357356a/hutilscpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hutilscpp/00new/hutilscpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hutilscpp) * installing *source* package ‘NST’ ... ** this is package ‘NST’ version ‘3.1.10’ ** package ‘NST’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NST) * installing *source* package ‘EMbC’ ... ** this is package ‘EMbC’ version ‘2.0.4’ ** package ‘EMbC’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIJfmSS/R.INSTALL2f3f22480d765/EMbC/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mvbc.cpp -o mvbc.o mvbc.cpp: In function ‘Rcpp::NumericVector getClusters_cpp(arma::mat, arma::mat, arma::mat, arma::mat)’: mvbc.cpp:58:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 58 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 21 | for (int i = 0; i < m_dep.size(); i++) { | ~~^~~~~~~~~~~~~~ aon.cpp: In member function ‘void aonGraph::join(aonGraph&)’: aon.cpp:66:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int i = 0; i < m_result.size(); i++){ | ~~^~~~~~~~~~~~~~~~~ aon.cpp: In member function ‘void aonGraph::dijkstra(std::size_t, std::size_t)’: aon.cpp:112:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 112 | for (int i = 0; i < arr.size(); i++){ | ~~^~~~~~~~~~~~ aon.cpp: In member function ‘void aonGraph::dijkstra_reverse(std::size_t, std::size_t)’: aon.cpp:184:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for (int i = 0; i < arr.size(); i++){ | ~~^~~~~~~~~~~~ aon.cpp: In constructor ‘aonGraphC::aonGraphC(CGraph*, Graph*, IVec, IVec, DVec, int)’: aon.cpp:589:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 589 | for (int i = 0; i < m_dep.size(); i++) { | ~~^~~~~~~~~~~~~~ aon.cpp: In member function ‘void aonGraphC::join(aonGraphC&)’: aon.cpp:635:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 635 | for (int i = 0; i < m_result.size(); i++){ | ~~^~~~~~~~~~~~~~~~~ aon.cpp: In member function ‘void aonGraphC::dijkstra_bidir(std::size_t, std::size_t)’: aon.cpp:804:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 804 | for (int i = 0; i ::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 868 | for (int i=0; i < (m_gr->indGr.size()-1); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~ aon.cpp: In member function ‘void aonGraphC::phastr(std::size_t, std::size_t)’: aon.cpp:999:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 999 | for (int i=0; i < (m_gr->indG.size()-1); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ aon.cpp: In constructor ‘unpackC::unpackC(CGraph*, Graph*, Graph*, DVec, bool)’: aon.cpp:1086:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1086 | for (int i = 0; i < node_dict.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~ aon.cpp: In member function ‘void unpackC::join(unpackC&)’: aon.cpp:1099:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1099 | for (int i = 0; i < m_result.size(); i++){ | ~~^~~~~~~~~~~~~~~~~ aon.cpp: In member function ‘void aonGraphC::dijkstra_bidir(std::size_t, std::size_t)’: aon.cpp:749:33: warning: ‘mid’ may be used uninitialized [-Wmaybe-uninitialized] 749 | for (auto p = parents2[mid]; p != -1; p = parents2[p]){ | ^ aon.cpp:662:9: note: ‘mid’ was declared here 662 | int mid; | ^~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bush.cpp -o bush.o bush.cpp: In constructor ‘Bush::Bush(Graph*, int, IVec, DVec, Bush_vectors*, double)’: bush.cpp:49:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 49 | for (unsigned int i = gptr->indG[v]; i< gptr->indG[v + 1]; i++) { bush.cpp:65:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 65 | for (unsigned int i = 0; i < gptr->nbnode; i++){ | ~~^~~~~~~~~~~~~~ bush.cpp: In member function ‘void Bush::ordering()’: bush.cpp:80:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < gptr->nodeG.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~ bush.cpp: In member function ‘void Bush::minmaxtree2(int)’: bush.cpp:119:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 119 | for (int i = 0; i < edges.size(); i++){ | ~~^~~~~~~~~~~~~~ bush.cpp:136:11: warning: variable ‘edge_index’ set but not used [-Wunused-but-set-variable] 136 | int edge_index = 0; | ^~~~~~~~~~ bush.cpp: In member function ‘void Bush::loadAON()’: bush.cpp:199:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 199 | for (int i = 0; i < arr.size(); i++){ | ~~^~~~~~~~~~~~ bush.cpp: In member function ‘void Bush::optimize2()’: bush.cpp:227:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 227 | for (int i = 0; i < edges.size(); i++){ | ~~^~~~~~~~~~~~~~ bush.cpp:262:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 262 | for (int i = 0; i < edges.size(); i++){ | ~~^~~~~~~~~~~~~~ bush.cpp:271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (int i = 0; i < edges.size(); i++){ | ~~^~~~~~~~~~~~~~ bush.cpp: In member function ‘void Bush::update_one_cost(int)’: bush.cpp:301:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 301 | for (int j = 0; j < gptr->data[gptr->indG2[edge_index]].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bush.cpp: In member function ‘void Bush::shift_flow(int)’: bush.cpp:394:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 394 | for (int i = 0; i < ldiff.size(); i++){ | ~~^~~~~~~~~~~~~~ bush.cpp:399:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 399 | for (int i = 0; i < sdiff.size(); i++){ | ~~^~~~~~~~~~~~~~ bush.cpp:409:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 409 | for (int j = 0; j < sdiff.size(); j++){ | ~~^~~~~~~~~~~~~~ bush.cpp:419:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 419 | for (int j = 0; j < ldiff.size(); j++){ | ~~^~~~~~~~~~~~~~ bush.cpp:438:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | for (int j = 0; j < sdiff.size(); j++) { | ~~^~~~~~~~~~~~~~ bush.cpp:456:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for (int j = 0; j < ldiff.size(); j++) { | ~~^~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cgraph.cpp -o cgraph.o cgraph.cpp: In constructor ‘CGraph::CGraph(IVec&, IVec&, DVec&, int)’: cgraph.cpp:27:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | for (int j = 0; j < cdata[gfrom[i]].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~ cgraph.cpp: In constructor ‘CGraph::CGraph(Graph*)’: cgraph.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 86 | for (int i = 0; i != graph->data.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ cgraph.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int k = 0; k < graph->data[i].size(); k++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ cgraph.cpp:91:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for (int j = 0; j < cdata[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ cgraph.cpp: In member function ‘G CGraph::getReverse(G&)’: cgraph.cpp:118:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 118 | for (int j = 0; j < graph[i].size(); ++j){ | ~~^~~~~~~~~~~~~~~~~ cgraph.cpp: In member function ‘void CGraph::construct_shortcuts()’: cgraph.cpp:138:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i=0; i < shortf.size(); i++){ | ~~^~~~~~~~~~~~~~~ cgraph.cpp: In member function ‘Rcpp::List CGraph::getEdges()’: cgraph.cpp:154:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | for (int j=0; j < cdata[i].size();j++){ | ~~^~~~~~~~~~~~~~~~~ cgraph.cpp: In member function ‘void CGraph::unpack(IVec&)’: cgraph.cpp:214:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 214 | for (int i=0; i < (path.size() -1);i++){ | ~~^~~~~~~~~~~~~~~~~~ cgraph.cpp:216:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 216 | for (int j = 0; j < shortcuts[path[i]].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ cgraph.cpp: In member function ‘void CGraph::to_adj_list(bool, bool)’: cgraph.cpp:255:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 255 | for (int i=0; i < cdata.size();i++){ | ~~^~~~~~~~~~~~~~ cgraph.cpp:258:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 258 | for (int j = 0; j < cdata[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ cgraph.cpp:281:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 281 | for (int i=0; i < cdataR.size();i++){ | ~~^~~~~~~~~~~~~~~ cgraph.cpp:284:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for (int j = 0; j < cdataR[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~ cgraph.cpp: In member function ‘bool CGraph::stall(int&, DVec&, G&)’: cgraph.cpp:299:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 299 | for (int i = 0; i < graph[node].size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~ cgraph.cpp: In member function ‘Rcpp::NumericMatrix CGraph::routing_dmat(IVec, IVec, int)’: cgraph.cpp:359:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 359 | for (int i=0; i< cdata[v].size(); i++){ | ~^~~~~~~~~~~~~~~~~ cgraph.cpp:378:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int i=0; i < distances.size();i++){ | ~~^~~~~~~~~~~~~~~~~~ cgraph.cpp:392:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 392 | for (int i=0; i < BucketF.size();i++){ | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c contract.cpp -o contract.o contract.cpp: In member function ‘void CGraph::clean(G&, G&, int, IVec&, DVec&, DVec&)’: contract.cpp:35:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < arr.size(); i++) sel.insert(arr[i]); | ~~^~~~~~~~~~~~ contract.cpp:72:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 72 | for (int i=0; i < arr.size(); i++){ | ~~^~~~~~~~~~~~ contract.cpp:76:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 76 | for (int j=0; j < Graph[dep].size();j++){ | ~~^~~~~~~~~~~~~~~~~~~ contract.cpp:87:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 87 | for (int i=0; i < visited.size();i++) distances[visited[i]]=numeric_limits::max(); | ~~^~~~~~~~~~~~~~~~ contract.cpp: In member function ‘int CGraph::find_shortcuts(G&, int, IVec&, DVec&, int, DVec&)’: contract.cpp:138:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i=0; i < arr.size(); i++){ | ~~^~~~~~~~~~~~ contract.cpp:143:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 143 | for (int i=0; i < visited.size();i++) distances[visited[i]] = numeric_limits::max(); | ~~^~~~~~~~~~~~~~~~ contract.cpp: In member function ‘std::vector > > CGraph::get_shortcuts(G&, int, IVec&, DVec&, int, DVec&, bool)’: contract.cpp:265:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (int i=0; i < arr.size(); i++){ | ~~^~~~~~~~~~~~ contract.cpp:285:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 285 | for (int i = 0; i < visited.size(); i++) distances[visited[i]]=numeric_limits::max(); | ~~^~~~~~~~~~~~~~~~ contract.cpp: In member function ‘void CGraph::contract_one_node(int, G&, G&, G&, DVec&, IVec&)’: contract.cpp:333:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 333 | for (int j=0; j < result.size();j++) Final.push_back(result[j]); | ~~^~~~~~~~~~~~~~~ contract.cpp:316:11: warning: unused variable ‘shortcuts’ [-Wunused-variable] 316 | int shortcuts=0; | ^~~~~~~~~ contract.cpp:359:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 359 | for (int j=0; j < result.size();j++) Final.push_back(result[j]); | ~~^~~~~~~~~~~~~~~ contract.cpp:344:11: warning: unused variable ‘shortcuts’ [-Wunused-variable] 344 | int shortcuts=0; | ^~~~~~~~~ contract.cpp:375:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 375 | for (int i=0; i < graph[nd].size();i++){ | ~~^~~~~~~~~~~~~~~~~~ contract.cpp:379:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 379 | for (int i=0; i < ind.size(); i++) quickDelete3(ind[i], graph[nd]); | ~~^~~~~~~~~~~~ contract.cpp:387:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 387 | for (int i=0; i < graphr[nd].size();i++){ | ~~^~~~~~~~~~~~~~~~~~~ contract.cpp:391:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 391 | for (int i=0; i < ind2.size(); i++) quickDelete3(ind2[i], graphr[nd]); | ~~^~~~~~~~~~~~~ contract.cpp:406:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 406 | for (int i=0; i < Final.size(); i++){ | ~~^~~~~~~~~~~~~~ contract.cpp:419:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 419 | for (int k=0; k < graph[Final[i].first].size(); k++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contract.cpp:431:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 431 | for (int k=0; k < graphr[Final[i].second.first].size(); k++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contract.cpp: In member function ‘void CGraph::contract(bool)’: contract.cpp:458:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 458 | for (int j=0; j < cdata[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ contract.cpp:528:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 528 | for (int i = 0; i < cdata[v].size(); i++){ | ~~^~~~~~~~~~~~~~~~~ contract.cpp:518:9: warning: unused variable ‘imp’ [-Wunused-variable] 518 | int imp=Queue.top().second; | ^~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_mat.cpp -o distance_mat.o distance_mat.cpp: In member function ‘void distanceMat::dijkstra_mat(std::size_t, std::size_t)’: distance_mat.cpp:65:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 65 | for (int i = 0; i != m_arr.size(); i++){ | ~~^~~~~~~~~~~~~~~ distance_mat.cpp: In member function ‘virtual void distanceMatC::operator()(std::size_t, std::size_t)’: distance_mat.cpp:162:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 162 | for (int i=0; i < Dist.size();i++){ | ~~^~~~~~~~~~~~~ distance_mat.cpp: In member function ‘virtual void phastC::operator()(std::size_t, std::size_t)’: distance_mat.cpp:233:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 233 | for (int i=0; i < (m_gr->indGr.size()-1); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~ distance_mat.cpp:246:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for (int i=0; i != m_arr.size(); i++){ | ~~^~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_pair.cpp -o distance_pair.o distance_pair.cpp: In member function ‘void distancePair::nba(std::size_t, std::size_t)’: distance_pair.cpp:353:9: warning: variable ‘mid’ set but not used [-Wunused-but-set-variable] 353 | int mid; | ^~~ distance_pair.cpp: In member function ‘void distancePairC::bidirmod(std::size_t, std::size_t)’: distance_pair.cpp:637:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 637 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 646 | for (int i=0; i::max(); | ~^~~~~~~~~~~~~~~ distance_pair.cpp:647:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 647 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 648 | for (int i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int j = 0; j < data[gfrom[i]].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ graph.cpp: In constructor ‘Graph::Graph(IVec&, IVec&, DVec&, DVec&, int)’: graph.cpp:74:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for (int i=0; i < data2.size();i++){ | ~~^~~~~~~~~~~~~~ graph.cpp:77:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 77 | for (int j = 0; j < data2[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ graph.cpp:97:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 97 | for (int i=0; i < data3.size();i++){ | ~~^~~~~~~~~~~~~~ graph.cpp:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int j = 0; j < data3[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ graph.cpp: In constructor ‘Graph::Graph(IVec&, IVec&, DVec&, DVec&, DVec&, DVec&, DVec&, DVec&, DVec&, int)’: graph.cpp:146:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 146 | for (int i=0; i < data2.size();i++){ | ~~^~~~~~~~~~~~~~ graph.cpp:149:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 149 | for (int j = 0; j < data2[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ graph.cpp: In member function ‘void Graph::setReverse()’: graph.cpp:172:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 172 | for (int j = 0; j < data[i].size(); ++j){ | ~~^~~~~~~~~~~~~~~~ graph.cpp: In member function ‘Rcpp::List Graph::getEdges()’: graph.cpp:196:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 196 | for (int i=0; i < data.size(); i++){ | ~~^~~~~~~~~~~~~ graph.cpp:205:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 205 | for (int i=0; i < data.size();i++){ | ~~^~~~~~~~~~~~~ graph.cpp:206:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | for (int j=0; j < data[i].size();j++){ | ~~^~~~~~~~~~~~~~~~ graph.cpp: In member function ‘void Graph::to_adj_list(bool)’: graph.cpp:236:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 236 | for (int i=0; i < data.size();i++){ | ~~^~~~~~~~~~~~~ graph.cpp:239:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 239 | for (int j = 0; j < data[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~ graph.cpp:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 259 | for (int i=0; i < dataR.size();i++){ | ~~^~~~~~~~~~~~~~ graph.cpp:262:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 262 | for (int j = 0; j < dataR[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c path_mat.cpp -o path_mat.o path_mat.cpp: In member function ‘void pathMat::dijkstra_path_mat(std::size_t, std::size_t)’: path_mat.cpp:33:7: warning: unused variable ‘count’ [-Wunused-variable] 33 | int count = 0; | ^~~~~ path_mat.cpp: In member function ‘void pathMat::multi_iso(std::size_t, std::size_t)’: path_mat.cpp:145:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 145 | for (int i = 0; i < m_lim.size(); i++){ | ~~^~~~~~~~~~~~~~ path_mat.cpp:147:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 147 | for (int j = 0; j < distances.size(); j++){ | ~~^~~~~~~~~~~~~~~~~~ path_mat.cpp: In member function ‘virtual void pathMatC::operator()(std::size_t, std::size_t)’: path_mat.cpp:227:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 227 | for (int i=0; i < (m_gr->indGr.size()-1); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~ path_mat.cpp:264:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 264 | for (int j = 0; j < result2.size(); j++){ | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c path_pair.cpp -o path_pair.o path_pair.cpp: In member function ‘void pathPair::iso(std::size_t, std::size_t)’: path_pair.cpp:544:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (int i = 0; i != Distances.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~ path_pair.cpp: In member function ‘void pathPair::detour(std::size_t, std::size_t)’: path_pair.cpp:666:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 666 | for (int i=0; i < distances.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ path_pair.cpp: In member function ‘void pathPairC::bidirmod(std::size_t, std::size_t)’: path_pair.cpp:826:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 826 | for (int i = 0; i ::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 838 | for (int i = 0; i < result2.size(); i++) if (m_keep[result2[i]]==1) result3.push_back(m_gr->dict[result2[i]]); | ~~^~~~~~~~~~~~~~~~ path_pair.cpp:803:33: warning: ‘mid’ may be used uninitialized [-Wmaybe-uninitialized] 803 | for (auto p = parents2[mid]; p != -1; p = parents2[p]){ | ^ path_pair.cpp:717:9: note: ‘mid’ was declared here 717 | int mid; | ^~~ path_pair.cpp: In member function ‘void pathPair::nba(std::size_t, std::size_t)’: path_pair.cpp:467:5: warning: ‘mid’ may be used uninitialized [-Wmaybe-uninitialized] 467 | if (mid > -1) { | ^~ path_pair.cpp:362:9: note: ‘mid’ was declared here 362 | int mid; | ^~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simplify.cpp -o simplify.o simplify.cpp: In member function ‘void Graph::simp(std::vector >&, IVec&, std::vector >&, IVec&, IVec&, bool&)’: simplify.cpp:26:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int i=0; i < data.size() ; ++i){ | ~~^~~~~~~~~~~~~ simplify.cpp:60:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 60 | for (int i=0; i < data.size() ; ++i){ | ~~^~~~~~~~~~~~~ simplify.cpp:150:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | for (int i=0; i < data.size() ; ++i){ | ~~^~~~~~~~~~~~~ simplify.cpp:237:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 237 | for (int i=0; i < Edges.size(); ++i){ | ~~^~~~~~~~~~~~~~ simplify.cpp:240:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 240 | for (int k=0; k < (path.size()-1); ++k){ | ~~^~~~~~~~~~~~~~~~~ simplify.cpp:246:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for (int m=0; m < data[node1].size(); ++m){ | ~~^~~~~~~~~~~~~~~~~~~~ simplify.cpp:262:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 262 | for (int k=0; k < (path2.size()-1); ++k){ | ~~^~~~~~~~~~~~~~~~~~ simplify.cpp:266:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 266 | for (int m=0; m < data[node1].size(); ++m){ | ~~^~~~~~~~~~~~~~~~~~~~ simplify.cpp:281:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 281 | for (int i=0; i < Edges.size();i++){ | ~~^~~~~~~~~~~~~~ simplify.cpp:282:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 282 | for (int j=1; j < Edges[i].size()-1;j++){ | ~~^~~~~~~~~~~~~~~~~~~ simplify.cpp:287:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int k=0; k < Gr[Edges[i][j]].size();k++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~ simplify.cpp:288:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 288 | for (int m=0; m < data[Gr[Edges[i][j]][k]].size();m++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simplify.cpp:298:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 298 | for (int k=0; k < Gr_remov.size();k++){ | ~~^~~~~~~~~~~~~~~~~ simplify.cpp:299:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 299 | for (int m=0; m < Gr[Gr_remov[k].first].size();m++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simplify.cpp:312:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 312 | for (int i=0; i < data.size(); ++i){ | ~~^~~~~~~~~~~~~ simplify.cpp:317:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 317 | for (int k=0; k < Gr[i].size();k++){ | ~~^~~~~~~~~~~~~~ simplify.cpp:318:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 318 | for (int m=0; m < data[Gr[i][k]].size();m++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ simplify.cpp:327:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 327 | for (int k=0; k < Gr_remov.size();k++){ | ~~^~~~~~~~~~~~~~~~~ simplify.cpp:328:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 328 | for (int m=0; m < Gr[Gr_remov[k].first].size();m++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simplify.cpp:343:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 343 | for (int i=0; i < Edges.size(); i++){ | ~~^~~~~~~~~~~~~~ simplify.cpp:353:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 353 | for (int k=0; k >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 373 | for (int k=0; k > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | for (int i=0; i < data.size();i++){ | ~~^~~~~~~~~~~~~ simplify.cpp:399:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 399 | for (int j=0; j < data[i].size();j++){ | ~~^~~~~~~~~~~~~~~~ simplify.cpp:403:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 403 | for (int j=0; j < Gr[i].size();j++){ | ~~^~~~~~~~~~~~~~ simplify.cpp:410:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 410 | for (int i=0; i < Nodes.size();i++){ | ~~^~~~~~~~~~~~~~ simplify.cpp: In member function ‘void Graph::simplify(bool, IVec, bool, bool)’: simplify.cpp:435:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 435 | for (unsigned int i = 0; i < nbnode; ++i) { | ~~^~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stall.cpp -o stall.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c traffic.cpp -o traffic.o traffic.cpp: In member function ‘double Graph::f(double)’: traffic.cpp:37:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 37 | for (int i = 0; i < flow.size(); i++){ | ~~^~~~~~~~~~~~~ traffic.cpp: In member function ‘void Graph::update_cost()’: traffic.cpp:67:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (int j = 0; j < data[indG2[i]].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ traffic.cpp: In function ‘DVec ch_aon(Graph*, IVec, IVec, DVec&, bool, int)’: traffic.cpp:199:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 199 | for (int i = 0; i < gfrom.size(); i++){ | ~~^~~~~~~~~~~~~~ traffic.cpp:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 204 | for (int i = 0; i < cgraph.shortf.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~ traffic.cpp:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i = 0; i < dep.size(); i++){ | ~~^~~~~~~~~~~~ traffic.cpp: In function ‘void storeBushes(std::vector&, std::vector >&, int, std::string&, IVec&, bool)’: traffic.cpp:434:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 434 | for (int i = 0; i < batch_vec[batch_num].size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ traffic.cpp: In function ‘void loadBushes(std::vector&, std::vector >&, int, std::string&, IVec&, bool)’: traffic.cpp:471:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 471 | for (int i = 0; i < batch_vec[batch_num].size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ traffic.cpp: In member function ‘void Graph::algorithmB(int, int, std::string, double, int, IVec, IVec, DVec, int, int, double, bool, bool, bool)’: traffic.cpp:518:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 518 | for (int i = 0; i < dep.size(); i++) { | ~~^~~~~~~~~~~~ traffic.cpp:538:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::vector > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 538 | for (int i = 0; i < od.size(); i++){ | ~~^~~~~~~~~~~ traffic.cpp:557:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 557 | for (int i = 0; i < batches.size(); i++){ | ~~^~~~~~~~~~~~~~~~ traffic.cpp:558:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 558 | for (int j = 0; j < batches[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~~ traffic.cpp:598:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 598 | for (int i = 0; i < batches[batch_index].size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ traffic.cpp:624:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for (int j = 0; j < b->arr.size(); j++){ | ~~^~~~~~~~~~~~~~~ traffic.cpp:663:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 663 | for (int i = 0; i < batches[batch_index].size(); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ traffic.cpp:685:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 685 | for (int j = 0; j < b->arr.size(); j++){ | ~~^~~~~~~~~~~~~~~ traffic.cpp:574:8: warning: unused variable ‘changed’ [-Wunused-variable] 574 | bool changed = false; | ^~~~~~~ traffic.cpp:578:10: warning: unused variable ‘shift’ [-Wunused-variable] 578 | double shift; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.cpp -o wrapper.o wrapper.cpp: In function ‘Rcpp::List cpppathmat(std::vector&, std::vector&, std::vector&, int, std::vector >, std::vector, std::vector, std::vector, std::vector, bool, int, bool)’: wrapper.cpp:112:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 112 | for (int i = 0; i < final[0].size(); i++){ | ~~^~~~~~~~~~~~~~~~~ wrapper.cpp:116:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 116 | for (int j = 0; j < final.size(); j++){ | ~~^~~~~~~~~~~~~~ wrapper.cpp:136:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 136 | for (int i = 0; i < final.size(); i++){ | ~~^~~~~~~~~~~~~~ wrapper.cpp:138:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int j = 0; j < final[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ wrapper.cpp: In function ‘Rcpp::List cpppathmatC(std::vector&, std::vector&, std::vector&, int, std::vector&, std::vector&, std::vector&, std::vector&, bool, std::vector >, std::vector, std::vector, std::vector)’: wrapper.cpp:265:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (int i = 0; i < final.size(); i++){ | ~~^~~~~~~~~~~~~~ wrapper.cpp:267:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 267 | for (int j = 0; j < final[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~ wrapper.cpp: In function ‘Rcpp::List cppaon(std::vector&, std::vector&, std::vector&, int, std::vector, std::vector, double, std::vector, std::vector, std::vector, int)’: wrapper.cpp:391:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 391 | for (int i = 0; i < (network.indG.size() - 1); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ wrapper.cpp: In function ‘Rcpp::List cppaonC(std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, int, std::vector&, std::vector&, std::vector&, std::vector&, bool, std::vector, std::vector, std::vector, int)’: wrapper.cpp:430:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 430 | for (int i = 0; i < (original.indG.size() - 1); i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cppRouting.so RcppExports.o aggc.o aon.o bush.o cgraph.o contract.o distance_mat.o distance_pair.o graph.o path_mat.o path_pair.o simplify.o stall.o traffic.o wrapper.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprCH0sn/R.INSTALL2f2b86264bcf97/cppRouting/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cppRouting/00new/cppRouting/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cppRouting) * installing *source* package ‘ctmm’ ... ** this is package ‘ctmm’ version ‘1.3.0’ ** package ‘ctmm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ctmm) begin installing package ‘amt’ * installing *source* package ‘moveHMM’ ... ** this is package ‘moveHMM’ version ‘1.12’ ** package ‘moveHMM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsypEZ0/R.INSTALL2f499f32d43d6d/moveHMM/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c moveHMM_init.c -o moveHMM_init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nLogLike.cpp -o nLogLike.o nLogLike.cpp: In function ‘double nLogLike_rcpp(int, arma::mat, arma::mat, Rcpp::DataFrame, std::string, std::string, arma::mat, arma::mat, arma::rowvec, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector)’: nLogLike.cpp:187:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 187 | for(int i=0 ; i findCandidate(const rtree >&, const std::array&, const std::array&, const std::array&, const std::array&, T, const rtree >::ptr_type>&, bool&)’: concaveman.h:694:38: warning: typedef ‘circ_elem_type’ locally defined but not used [-Wunused-local-typedefs] 694 | typedef CircularElement> circ_elem_type; | ^~~~~~~~~~~~~~ concaveman.cpp: In function ‘Rcpp::DataFrame rcpp_concaveman(Rcpp::DataFrame, Rcpp::NumericVector, double, double)’: concaveman.cpp:16:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 16 | for (auto i = 0; i < num_points; i++) { | ~~^~~~~~~~~~~~ concaveman.cpp:27:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | for (int i = 0; i < concave_points.size (); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c deduplicate.cpp -o deduplicate.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dgraph.cpp -o dgraph.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pathfinders.cpp -o pathfinders.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dodgr-to-sf.cpp -o dodgr-to-sf.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c flows.cpp -o flows.o flows.cpp: In member function ‘virtual void OneAggregatePaired::operator()(size_t, size_t)’: flows.cpp:322:51: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 322 | if (target < 0L || target == from_i) | ~~~~~~~^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fund-cycles.cpp -o fund-cycles.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graph-contract.cpp -o graph-contract.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graph.cpp -o graph.o graph.cpp: In function ‘Rcpp::List rcpp_get_component_vector(const Rcpp::DataFrame&)’: graph.cpp:198:10: warning: variable ‘has_times’ set but not used [-Wunused-but-set-variable] 198 | bool has_times = graph::graph_from_df (graph, vertices, edge_map, vert2edge_map); | ^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graph-sample.cpp -o graph-sample.o graph-sample.cpp: In function ‘Rcpp::StringVector rcpp_sample_graph(Rcpp::DataFrame, size_t)’: graph-sample.cpp:109:10: warning: variable ‘has_times’ set but not used [-Wunused-but-set-variable] 109 | bool has_times = graph::graph_from_df (graph, vertices, edge_map, vert2edge_map); | ^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c match-points.cpp -o match-points.o match-points.cpp: In member function ‘virtual void OneEdgeIndex::operator()(std::size_t, std::size_t)’: match-points.cpp:99:17: warning: variable ‘which_side’ set but not used [-Wunused-but-set-variable] 99 | int which_side = INFINITE_INT; | ^~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:5: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c run_sp.cpp -o run_sp.o run_sp.cpp: In member function ‘virtual void OneIso::operator()(std::size_t, std::size_t)’: run_sp.cpp:350:28: warning: unused variable ‘st_prev’ [-Wunused-variable] 350 | size_t st_prev = static_cast (prev [j]); | ^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c run_sp_categorical.cpp -o run_sp_categorical.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sc-as-network.cpp -o sc-as-network.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sf-as-network.cpp -o sf-as-network.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c turn_penalty.cpp -o turn_penalty.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dodgr.so heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/triheap_ext.o heaps/triheap.o centrality.o concaveman.o deduplicate.o dgraph.o pathfinders.o dodgr-to-sf.o flows.o fund-cycles.o graph-contract.o graph.o graph-sample.o match-points.o RcppExports.o run_sp.o run_sp_categorical.o sc-as-network.o sf-as-network.o turn_penalty.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpX7FLYI/R.INSTALL2f32b55be9f949/dodgr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dodgr/00new/dodgr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dodgr) * installing *source* package ‘rayvertex’ ... ** this is package ‘rayvertex’ version ‘0.12.0’ ** package ‘rayvertex’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAqjh6A/R.INSTALL2f48ee763b66ce/rayvertex/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:5: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c assert.cpp -o assert.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c calcnormals.cpp -o calcnormals.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c calctangents.cpp -o calctangents.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c displacement.cpp -o displacement.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c filltri.cpp -o filltri.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c light.cpp -o light.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c line.cpp -o line.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c load_obj.cpp -o load_obj.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c load_ply.cpp -o load_ply.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c loopsubdiv.cpp -o loopsubdiv.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c miniply.cpp -o miniply.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c rasterize_lines_rcpp.cpp -o rasterize_lines_rcpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c rayimage.cpp -o rayimage.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c rayraster.cpp -o rayraster.o rayraster.cpp: In function ‘Rcpp::List rasterize(Rcpp::List, Rcpp::NumericMatrix, Rcpp::NumericMatrix, int, int, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, Rcpp::IntegerVector, bool, bool, bool, double, double, int, int, Rcpp::LogicalVector, Rcpp::LogicalVector, Rcpp::LogicalVector, Rcpp::LogicalVector, Rcpp::LogicalVector, Rcpp::LogicalVector, Rcpp::LogicalVector, Rcpp::LogicalVector, int, bool, double, double, double, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericVector, double, double, Rcpp::NumericVector, Rcpp::LogicalVector, bool, Rcpp::LogicalVector&, Rcpp::LogicalVector&, Rcpp::LogicalVector, Rcpp::String, double, Rcpp::LogicalVector, bool, bool, Rcpp::NumericVector, bool)’: rayraster.cpp:1252:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1252 | for(int i = 0; i < depthshaders[j].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~ rayraster.cpp:1267:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1267 | for(unsigned int i = 0; i < linear_depth.nrow(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ rayraster.cpp:1268:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1268 | for(unsigned int j= 0; j < linear_depth.ncol(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c shaders.cpp -o shaders.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth_normals_mesh_rcpp.cpp -o smooth_normals_mesh_rcpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c tonemap.cpp -o tonemap.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/tmp/CRAN_recheck/Library/rayimage/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../src/glm -I../src/glm/gtc -fpic -g -O2 -Wall -pedantic -mtune=native -c wireframe.cpp -o wireframe.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rayvertex.so RcppExports.o assert.o calcnormals.o calctangents.o displacement.o filltri.o light.o line.o load_obj.o load_ply.o loopsubdiv.o miniply.o rasterize_lines_rcpp.o rayimage.o rayraster.o shaders.o smooth_normals_mesh_rcpp.o tonemap.o wireframe.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAqjh6A/R.INSTALL2f48ee763b66ce/rayvertex/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rayvertex/00new/rayvertex/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rayvertex) begin installing package ‘rayrender’ begin installing package ‘raybevel’ * installing *source* package ‘raybevel’ ... ** this is package ‘raybevel’ version ‘0.2.2’ ** package ‘raybevel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTeQxfO/R.INSTALL2f4ef93ae0ae24/raybevel/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:5: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c convert_ss_to_polygons_rcpp.cpp -o convert_ss_to_polygons_rcpp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c generate_offset_links_nodes_rcpp.cpp -o generate_offset_links_nodes_rcpp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math.cpp -o math.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rayskeleton.cpp -o rayskeleton.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/bind.hpp:24, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/lambda.hpp:18, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/Cartesian_converter.h:36, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/Filtered_kernel.h:19, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21, from rayskeleton.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/property_map/vector_property_map.hpp:14, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/property_map/property_map.hpp:598, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/graph/properties.hpp:19, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS.h:25, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS_default.h:15, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/HalfedgeDS_default.h:23, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/Straight_skeleton_2.h:18, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:18, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/create_straight_skeleton_from_polygon_with_holes_2.h:17, from rayskeleton.cpp:8: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:294:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 294 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/bits/std_thread.h:45, from /usr/include/c++/15/stop_token:40, from /usr/include/c++/15/thread:44, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/config.h:427, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/basic.h:21, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/Cartesian/Cartesian_base.h:20, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/Simple_cartesian.h:20, from /home/hornik/tmp/CRAN_recheck/Library/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o raybevel.so RcppExports.o convert_ss_to_polygons_rcpp.o generate_offset_links_nodes_rcpp.o math.o rayskeleton.o -latomic -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTeQxfO/R.INSTALL2f4ef93ae0ae24/raybevel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-raybevel/00new/raybevel/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (raybevel) * installing *source* package ‘rayrender’ ... ** this is package ‘rayrender’ version ‘0.38.10’ ** package ‘rayrender’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-15 -E checking whether the compiler supports GNU C++... yes checking whether g++-15 accepts -g... yes checking for g++-15 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-15 -E checking for X... libraries , headers checking for Open Image Denoise (OIDN)... configure: WARNING: OIDN not found. Skipping OIDN support. checking for SSE4.1 support... no checking for SSE3 support... no checking for SSE2 support... yes checking for NEON support... no checking If test debugging should be turned on:... configure: RAY_COLOR_DEBUG is "" No, not enabling debug configure: creating ./config.status config.status: creating src/Makevars -------------------------------------------------- Configuration for cppflags: -I/usr/local/include -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF libs: -lX11 includes: cxxflags: -g -O2 -Wall -pedantic -mtune=native -msse2 -------------------------------------------------- ** libs specified C++20 using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ using C++20 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphGRtiJ/R.INSTALL2f4ef75ec7d368/rayrender/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c PreviewDisplay.cpp -o PreviewDisplay.o PreviewDisplay.cpp: In member function ‘void PreviewDisplay::DrawImage(adaptive_sampler&, adaptive_sampler&, size_t&, RProgress::RProgress&, bool, Float, hitable*, random_gen&)’: PreviewDisplay.cpp:522:17: warning: ‘dir.vec3::e[0]’ may be used uninitialized [-Wmaybe-uninitialized] 522 | vec3f dir; | ^~~ PreviewDisplay.cpp:522:17: warning: ‘dir.vec3::e[1]’ may be used uninitialized [-Wmaybe-uninitialized] In file included from vectypes.h:4, from adaptivesampler.h:4, from PreviewDisplay.h:7, from PreviewDisplay.cpp:1: In member function ‘vec3 vec3::operator-() const [with T = float]’, inlined from ‘void PreviewDisplay::DrawImage(adaptive_sampler&, adaptive_sampler&, size_t&, RProgress::RProgress&, bool, Float, hitable*, random_gen&)’ at PreviewDisplay.cpp:569:37: vec3.h:23:45: warning: ‘dir.vec3::e[2]’ may be used uninitialized [-Wmaybe-uninitialized] 23 | inline vec3 operator-() const { return vec3(-e[0], -e[1], -e[2]); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ PreviewDisplay.cpp: In member function ‘void PreviewDisplay::DrawImage(adaptive_sampler&, adaptive_sampler&, size_t&, RProgress::RProgress&, bool, Float, hitable*, random_gen&)’: PreviewDisplay.cpp:522:17: note: ‘dir.vec3::e[2]’ was declared here 522 | vec3f dir; | ^~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c PrintClassSizes.cpp -o PrintClassSizes.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c RayMatrix.cpp -o RayMatrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:5: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c aabb.cpp -o aabb.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c adaptivesampler.cpp -o adaptivesampler.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c animatedtransform.cpp -o animatedtransform.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c assert.cpp -o assert.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c box.cpp -o box.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c buildscene.cpp -o buildscene.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c bvh.cpp -o bvh.o bvh.cpp: In member function ‘BVHBuildNode* BVHAggregate::buildRecursive(std::span, std::atomic*, std::atomic*, std::vector >&)’: bvh.cpp:200:61: warning: comparison of integer expressions of different signedness: ‘std::span::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 200 | if ((bounds.surface_area() == 0 || bvhPrimitives.size() <= maxPrimsInNode) && !isRoot) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ bvh.cpp:293:42: warning: comparison of integer expressions of different signedness: ‘std::span::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 293 | if (bvhPrimitives.size() > maxPrimsInNode || minCost < leafCost) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ bvh.cpp: In member function ‘void BVHAggregate::validateBVH4() const’: bvh.cpp:1049:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1049 | if (node->primitivesOffset + node->nPrimitives > primitives.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c calcnormals.cpp -o calcnormals.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c calctangents.cpp -o calctangents.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c camera.cpp -o camera.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c color.cpp -o color.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c constant.cpp -o constant.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c csg.cpp -o csg.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c curve.cpp -o curve.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c cylinder.cpp -o cylinder.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c debug.cpp -o debug.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c define_functions.cpp -o define_functions.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c disk.cpp -o disk.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c displacement.cpp -o displacement.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c distributions.cpp -o distributions.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c ellipsoid.cpp -o ellipsoid.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c filter.cpp -o filter.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c hitable.cpp -o hitable.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c hitablelist.cpp -o hitablelist.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c infinite_area_light.cpp -o infinite_area_light.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c instance.cpp -o instance.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c integrator.cpp -o integrator.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c loopsubdiv.cpp -o loopsubdiv.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c material.cpp -o material.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.cpp -o matrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c mesh3d.cpp -o mesh3d.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c microfacetdist.cpp -o microfacetdist.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c miniply.cpp -o miniply.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c pdf.cpp -o pdf.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c perlin.cpp -o perlin.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c plymesh.cpp -o plymesh.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c quaternion.cpp -o quaternion.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c raylog.cpp -o raylog.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c raymesh.cpp -o raymesh.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c rectangle.cpp -o rectangle.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c render_animation_rcpp.cpp -o render_animation_rcpp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c render_scene_rcpp.cpp -o render_scene_rcpp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c rng.cpp -o rng.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c sampler.cpp -o sampler.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c simd.cpp -o simd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c sphere.cpp -o sphere.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c texture.cpp -o texture.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c texturecache.cpp -o texturecache.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c tonemap.cpp -o tonemap.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c transform.cpp -o transform.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c transformcache.cpp -o transformcache.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c triangle.cpp -o triangle.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c trianglemesh.cpp -o trianglemesh.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c trimesh.cpp -o trimesh.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/spacefillr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D RAY_REPRODUCE_PERLIN -DSTRICT_R_HEADERS -DRAY_HAS_X11 -DHAS_SSE -DHAS_SSE2 -DRAYSIMD -DRAYSIMDVECOFF -fpic -g -O2 -Wall -pedantic -mtune=native -c vectypes.cpp -o vectypes.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rayrender.so PreviewDisplay.o PrintClassSizes.o RayMatrix.o RcppExports.o aabb.o adaptivesampler.o animatedtransform.o assert.o box.o buildscene.o bvh.o calcnormals.o calctangents.o camera.o color.o constant.o csg.o curve.o cylinder.o debug.o define_functions.o disk.o displacement.o distributions.o ellipsoid.o filter.o hitable.o hitablelist.o infinite_area_light.o instance.o integrator.o loopsubdiv.o material.o matrix.o mesh3d.o microfacetdist.o miniply.o pdf.o perlin.o plymesh.o quaternion.o raylog.o raymesh.o rectangle.o render_animation_rcpp.o render_scene_rcpp.o rng.o sampler.o simd.o sphere.o test-runner.o texture.o texturecache.o tonemap.o transform.o transformcache.o triangle.o trianglemesh.o trimesh.o vectypes.o -lX11 -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphGRtiJ/R.INSTALL2f4ef75ec7d368/rayrender/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rayrender/00new/rayrender/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rayrender) checking geosphere_1.6-5.tar.gz ... checking activatr_0.2.1.tar.gz ... checking assignR_2.4.3.tar.gz ... checking birdring_1.6.tar.gz ... checking cffdrs_1.9.2.tar.gz ... checking ClimClass_2.1.1.tar.gz ... checking cholera_0.9.1.tar.gz ... checking diveMove_1.6.4.tar.gz ... checking CoordinateCleaner_3.0.1.tar.gz ... checking echogram_0.1.3.tar.gz ... checking dynamAedes_2.2.9.tar.gz ... checking EcoCleanR_1.0.3.tar.gz ... checking ecocomDP_1.3.2.tar.gz ... checking epiflows_0.2.2.tar.gz ... checking ezTrack_0.1.0.tar.gz ... checking FEA_0.0.2.tar.gz ... checking fireexposuR_1.2.0.tar.gz ... checking flightplot_0.1.0.tar.gz ... checking FLightR_0.5.5.tar.gz ... checking fuzzyjoin_0.1.8.tar.gz ... checking fxTWAPLS_0.1.3.tar.gz ... checking gecko_1.0.2.tar.gz ... checking geohabnet_2.2.tar.gz ... checking geomerge_0.3.4.tar.gz ... checking geonetwork_0.6.0.tar.gz ... checking graticule_0.4.0.tar.gz ... checking GWLelast_1.2.2.tar.gz ... checking himach_1.0.1.tar.gz ... checking remotePARTS_1.0.4.tar.gz ... checking peacesciencer_1.2.0.tar.gz ... checking ODMeans_0.2.1.tar.gz ... checking rStrava_1.3.4.tar.gz ... checking rbgm_0.2.0.tar.gz ... checking SDLfilter_2.3.3.tar.gz ... checking resourcecode_0.5.3.tar.gz ... checking move_4.2.7.tar.gz ... checking PAMscapes_0.15.0.tar.gz ... checking swaRmverse_0.1.1.tar.gz ... checking reddPrec_3.0.2.tar.gz ... checking PAMpal_1.5.2.tar.gz ... checking hutils_2.0.0.tar.gz ... checking lakemorpho_1.3.2.tar.gz ... checking latbias_1.0.0.tar.gz ... checking sdsfun_0.8.1.tar.gz ... checking GGally_2.4.0.tar.gz ... checking Mapinguari_2.0.1.tar.gz ... checking PAMmisc_1.12.7.tar.gz ... checking PracTools_1.7.5.tar.gz ... checking WaterBalanceR_0.1.19.tar.gz ... checking satin_1.2.0.tar.gz ... checking mapmisc_2.1.3.tar.gz ... checking walkboutr_0.6.0.tar.gz ... checking moveHMM_1.12.tar.gz ... checking rSPARCS_0.1.1.tar.gz ... checking mobr_3.0.0.tar.gz ... checking red_1.6.3.tar.gz ... checking lwgeom_0.2-15.tar.gz ... checking palaeoverse_1.4.0.tar.gz ... checking multilink_0.1.1.tar.gz ... checking marmap_1.0.12.tar.gz ... checking m2b_1.1.0.tar.gz ... checking BiodiversityR_2.17-4.tar.gz ... checking memgene_1.0.3.tar.gz ... checking uavRmp_0.7.tar.gz ... checking track2KBA_1.1.3.tar.gz ... checking SeaSondeR_0.2.8.tar.gz ... checking waver_0.3.0.tar.gz ... checking cercospoRa_0.0.2.tar.gz ... checking amt_0.3.1.0.tar.gz ... checking skytrackr_2.0.tar.gz ... checking SNMA_0.1.5.tar.gz ... checking stampr_0.3.1.tar.gz ... checking sugarbag_0.1.10.tar.gz ... checking reslr_0.1.1.tar.gz ... checking sftrack_0.5.4.tar.gz ... checking pctax_0.1.7.tar.gz ... checking stppSim_1.3.4.tar.gz ... checking TCHazaRds_1.1.5.tar.gz ... checking growthTrendR_0.2.2.tar.gz ... checking stplanr_1.2.3.tar.gz ... checking o2geosocial_1.1.3.tar.gz ... checking nvctr_0.1.7.tar.gz ... checking sociome_3.0.0.tar.gz ... checking SongEvo_1.0.0.tar.gz ... checking spherepc_0.1.7.tar.gz ... checking momentuHMM_1.5.8.tar.gz ... checking barrks_1.1.2.tar.gz ... checking RWmisc_0.1.2.tar.gz ... checking rayshader_0.37.3.tar.gz ... checking sugarglider_1.0.3.tar.gz ... checking epizootic_2.0.0.tar.gz ... checking swaRm_0.6.0.tar.gz ... Depends: Package: geosphere Depends: R (>= 3.0.0) Imports: Rcpp, sp LinkingTo: Rcpp Timings: user system elapsed geosphere 102.35 9.8 127.691 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 3 88 Check results summary: geosphere ... NOTE * checking CRAN incoming feasibility ... [7s/22s] NOTE rdepends_activatr ... OK rdepends_amt ... OK rdepends_assignR ... OK rdepends_barrks ... OK rdepends_BiodiversityR ... OK rdepends_birdring ... OK rdepends_cercospoRa ... OK rdepends_cffdrs ... OK rdepends_cholera ... OK rdepends_ClimClass ... OK rdepends_CoordinateCleaner ... OK rdepends_diveMove ... OK rdepends_dynamAedes ... OK rdepends_echogram ... OK rdepends_EcoCleanR ... OK rdepends_ecocomDP ... OK rdepends_epiflows ... OK rdepends_epizootic ... OK rdepends_ezTrack ... OK rdepends_FEA ... OK rdepends_fireexposuR ... OK rdepends_flightplot ... OK rdepends_FLightR ... OK rdepends_fuzzyjoin ... OK rdepends_fxTWAPLS ... OK rdepends_gecko ... OK rdepends_geohabnet ... OK rdepends_geomerge ... OK rdepends_geonetwork ... OK rdepends_GGally ... OK rdepends_graticule ... OK rdepends_growthTrendR ... OK rdepends_GWLelast ... OK rdepends_himach ... OK rdepends_hutils ... OK rdepends_lakemorpho ... OK rdepends_latbias ... OK rdepends_lwgeom ... OK rdepends_m2b ... OK rdepends_Mapinguari ... OK rdepends_mapmisc ... OK rdepends_marmap ... OK rdepends_memgene ... OK rdepends_mobr ... NOTE * checking R code for possible problems ... [14s/14s] NOTE rdepends_momentuHMM ... OK rdepends_move ... OK rdepends_moveHMM ... OK rdepends_multilink ... OK rdepends_nvctr ... OK rdepends_o2geosocial ... OK rdepends_ODMeans ... OK rdepends_palaeoverse ... OK rdepends_PAMmisc ... OK rdepends_PAMpal ... OK rdepends_PAMscapes ... OK rdepends_pctax ... OK rdepends_peacesciencer ... OK rdepends_PracTools ... OK rdepends_rayshader ... OK rdepends_rbgm ... OK rdepends_red ... OK rdepends_reddPrec ... OK rdepends_remotePARTS ... OK rdepends_reslr ... OK rdepends_resourcecode ... OK rdepends_rSPARCS ... OK rdepends_rStrava ... OK rdepends_RWmisc ... OK rdepends_satin ... OK rdepends_SDLfilter ... OK rdepends_sdsfun ... OK rdepends_SeaSondeR ... OK rdepends_sftrack ... OK rdepends_skytrackr ... OK rdepends_SNMA ... OK rdepends_sociome ... OK rdepends_SongEvo ... OK rdepends_spherepc ... OK rdepends_stampr ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_stplanr ... OK rdepends_stppSim ... OK rdepends_sugarbag ... OK rdepends_sugarglider ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_swaRm ... OK rdepends_swaRmverse ... OK rdepends_TCHazaRds ... OK rdepends_track2KBA ... OK rdepends_uavRmp ... OK rdepends_walkboutr ... OK rdepends_WaterBalanceR ... OK rdepends_waver ... OK Check results changes: Package: birdring Check: CRAN incoming feasibility Old result: NOTE Package: cffdrs Check: CRAN incoming feasibility Old result: NOTE Package: dynamAedes Check: CRAN incoming feasibility Old result: NOTE Package: FEA Check: CRAN incoming feasibility Old result: NOTE Package: geomerge Check: CRAN incoming feasibility Old result: NOTE Package: GWLelast Check: CRAN incoming feasibility Old result: NOTE Package: reslr Check: CRAN incoming feasibility Old result: NOTE Package: SDLfilter Check: CRAN incoming feasibility Old result: NOTE Package: spherepc Check: CRAN incoming feasibility Old result: NOTE Package: stppSim Check: CRAN incoming feasibility Old result: NOTE