* using log directory ‘/home/hornik/tmp/CRAN_special_clang-san/georob.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.6 (1+b1) Debian flang-new version 19.1.6 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘georob/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘georob’ version ‘0.3-23’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘georob’ can be installed ... [47s/48s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [6s/6s] OK * checking whether the package can be loaded with stated dependencies ... [6s/6s] OK * checking whether the package can be unloaded cleanly ... [6s/6s] OK * checking whether the namespace can be loaded with stated dependencies ... [5s/5s] OK * checking whether the namespace can be unloaded cleanly ... [6s/6s] OK * checking loading without being on the library search path ... [6s/6s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [105s/105s] OK * checking Rd files ... [3s/3s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [35s/33s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [45s/44s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘georob_vignette.Rnw’ using Sweave Loading required package: sp Attaching package: ‘georob’ The following object is masked from ‘package:stats’: step recomputing robust Mahalanobis distances saving the robust distances 'MD' as part of ‘r.lmrob’ Warning in eval(expr, .GlobalEnv) : coalash block kriging by CKrige Warning in f.pixelgrid.sfc(polygons = newdata.polygons.sfc, neighbours = neighbours, : pixel grid has less than 2 pixels in x-direction Warning in f.pixelgrid.sfc(polygons = newdata.polygons.sfc, neighbours = neighbours, : pixel grid has less than 2 pixels in y-direction ================================================================= ==3165733==ERROR: AddressSanitizer: stack-buffer-overflow on address 0x7fd878812d00 at pc 0x7fd859de092f bp 0x7fffbf14d330 sp 0x7fffbf14d328 READ of size 8 at 0x7fd878812d00 thread T0 #0 0x7fd859de092e in PointRectCov /home/hornik/tmp/scratch/RtmpEOV5RU/R.INSTALL30378963961cfa/constrainedKriging/src/point_block_cov.c:403:12 #1 0x7fd87d7baf23 in do_dotCode /home/hornik/src/R/src/main/dotcode.c #2 0x7fd87d8f32b9 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #3 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #6 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #7 0x7fd87d8ae09f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #8 0x7fd87d8ae09f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #9 0x7fd87d55f165 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #10 0x7fd87da39cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #11 0x7fd87d8e48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #12 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7fd87d8ae09f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7fd87d8ae09f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #18 0x7fd87d55f165 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #19 0x7fd87da39cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #20 0x7fd87d8e48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #21 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #22 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #23 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #24 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #25 0x7fd87d8ae09f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #26 0x7fd87d8ae09f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #27 0x7fd87d55f165 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #28 0x7fd87da39cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #29 0x7fd87d8e48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #30 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #31 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #32 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #33 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #34 0x7fd87d8a69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #35 0x7fd87d8a69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #36 0x7fd87d8bb002 in do_begin /home/hornik/src/R/src/main/eval.c:3000:10 #37 0x7fd87d8a641b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #38 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #39 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #40 0x7fd87d8fe0ad in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #41 0x7fd87d8fe0ad in bcEval_loop /home/hornik/src/R/src/main/eval.c:8093:16 #42 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #43 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #44 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #45 0x7fd87d8afa87 in R_execMethod /home/hornik/src/R/src/main/eval.c:2562:11 #46 0x7fd879d1a6e5 in R_dispatchGeneric /home/hornik/src/R/src/library/methods/src/methods_list_dispatch.c:1151:19 #47 0x7fd87da50223 in do_standardGeneric /home/hornik/src/R/src/main/objects.c:1348:13 #48 0x7fd87d8eef03 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #49 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #50 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #51 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #52 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #53 0x7fd87d8a69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #54 0x7fd87d8a69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #55 0x7fd87d8bf365 in do_set /home/hornik/src/R/src/main/eval.c:3571:8 #56 0x7fd87d8a641b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #57 0x7fd87d8c4d52 in do_eval /home/hornik/src/R/src/main/eval.c:3945:13 #58 0x7fd87d8f32b9 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #59 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #60 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #61 0x7fd87d8a7f4f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #62 0x7fd87d8a68e7 in Rf_eval /home/hornik/src/R/src/main/eval.c:1187:6 #63 0x7fd87d8c6627 in do_withVisible /home/hornik/src/R/src/main/eval.c:3988:9 #64 0x7fd87da39cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #65 0x7fd87d8e48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #66 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #67 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #68 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #69 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #70 0x7fd87d8a69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #71 0x7fd87d8a69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #72 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #73 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #74 0x7fd87d8fe0ad in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #75 0x7fd87d8fe0ad in bcEval_loop /home/hornik/src/R/src/main/eval.c:8093:16 #76 0x7fd87d8a7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #77 0x7fd87d8a604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #78 0x7fd87d8b07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #79 0x7fd87d8ac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #80 0x7fd87d8a69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #81 0x7fd87d8a69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #82 0x7fd87d9ea3a7 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #83 0x7fd87d9ed1c0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #84 0x7fd87d9ecfe4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #85 0x7fd87d9ed28a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #86 0x55b83287fdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #87 0x7fd87cc33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #88 0x7fd87cc33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #89 0x55b83279c370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) Address 0x7fd878812d00 is located in stack of thread T0 at offset 256 in frame #0 0x7fd859dde977 in PointRectCov /home/hornik/tmp/scratch/RtmpEOV5RU/R.INSTALL30378963961cfa/constrainedKriging/src/point_block_cov.c:115 This frame has 6 object(s): [32, 40) 'res' (line 122) [64, 192) 'sc_pixcoords' (line 127) [224, 256) 'setlowerbound' (line 142) <== Memory access at offset 256 overflows this variable [288, 320) 'setupperbound' (line 144) [352, 384) 'pixelarea' (line 152) [416, 464) 'pcp' (line 170) HINT: this may be a false positive if your program uses some custom stack unwind mechanism, swapcontext or vfork (longjmp and C++ exceptions *are* supported) SUMMARY: AddressSanitizer: stack-buffer-overflow /home/hornik/tmp/scratch/RtmpEOV5RU/R.INSTALL30378963961cfa/constrainedKriging/src/point_block_cov.c:403:12 in PointRectCov Shadow bytes around the buggy address: 0x7fd878812a80: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fd878812b00: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fd878812b80: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fd878812c00: f1 f1 f1 f1 00 f2 f2 f2 00 00 00 00 00 00 00 00 0x7fd878812c80: 00 00 00 00 00 00 00 00 f2 f2 f2 f2 00 00 00 00 =>0x7fd878812d00:[f2]f2 f2 f2 00 00 00 00 f2 f2 f2 f2 00 00 00 00 0x7fd878812d80: f2 f2 f2 f2 00 00 00 00 00 00 f3 f3 f3 f3 f3 f3 0x7fd878812e00: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fd878812e80: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fd878812f00: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fd878812f80: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==3165733==ABORTING * checking PDF version of manual ... [8s/8s] OK * checking HTML version of manual ... [11s/11s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR