* using log directory ‘/home/hornik/tmp/CRAN_special_clang-san/georob.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.6 (1+b1) Debian flang-new version 19.1.6 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘georob/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘georob’ version ‘0.3-23’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘georob’ can be installed ... [44s/44s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [6s/6s] OK * checking whether the package can be loaded with stated dependencies ... [6s/6s] OK * checking whether the package can be unloaded cleanly ... [6s/6s] OK * checking whether the namespace can be loaded with stated dependencies ... [5s/5s] OK * checking whether the namespace can be unloaded cleanly ... [6s/6s] OK * checking loading without being on the library search path ... [6s/6s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [103s/103s] OK * checking Rd files ... [4s/4s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [34s/32s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [45s/44s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘georob_vignette.Rnw’ using Sweave Loading required package: sp Attaching package: ‘georob’ The following object is masked from ‘package:stats’: step recomputing robust Mahalanobis distances saving the robust distances 'MD' as part of ‘r.lmrob’ Warning in eval(expr, .GlobalEnv) : ash-bKriging-2 Warning in f.pixelgrid.sfc(polygons = newdata.polygons.sfc, neighbours = neighbours, : pixel grid has less than 2 pixels in x-direction Warning in f.pixelgrid.sfc(polygons = newdata.polygons.sfc, neighbours = neighbours, : pixel grid has less than 2 pixels in y-direction ================================================================= ==2662528==ERROR: AddressSanitizer: stack-buffer-overflow on address 0x7fadc5e58900 at pc 0x7fada83b892f bp 0x7fff0b81a970 sp 0x7fff0b81a968 READ of size 8 at 0x7fadc5e58900 thread T0 #0 0x7fada83b892e in PointRectCov /home/hornik/tmp/scratch/RtmpxKCfyr/R.INSTALL288a235d76ea0d/constrainedKriging/src/point_block_cov.c:403:12 #1 0x7fadcadbaf23 in do_dotCode /home/hornik/src/R/src/main/dotcode.c #2 0x7fadcaef32b9 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #3 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #6 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #7 0x7fadcaeae09f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #8 0x7fadcaeae09f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #9 0x7fadcab5f165 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #10 0x7fadcb039cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #11 0x7fadcaee48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #12 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7fadcaeae09f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7fadcaeae09f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #18 0x7fadcab5f165 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #19 0x7fadcb039cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #20 0x7fadcaee48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #21 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #22 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #23 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #24 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #25 0x7fadcaeae09f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #26 0x7fadcaeae09f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #27 0x7fadcab5f165 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #28 0x7fadcb039cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #29 0x7fadcaee48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #30 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #31 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #32 0x7fadcaea7f4f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #33 0x7fadcaea617e in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #34 0x7fadcb043ffe in do_usemethod /home/hornik/src/R/src/main/objects.c:575:16 #35 0x7fadcaee48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #36 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #37 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #38 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #39 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #40 0x7fadcaeae09f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #41 0x7fadcaeae09f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #42 0x7fadcab5f165 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #43 0x7fadcb039cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #44 0x7fadcaee48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #45 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #46 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #47 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #48 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #49 0x7fadcaeaa3f0 in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #50 0x7fadcb043122 in dispatchMethod /home/hornik/src/R/src/main/objects.c:473:16 #51 0x7fadcb0414b5 in Rf_usemethod /home/hornik/src/R/src/main/objects.c:513:10 #52 0x7fadcb0441dc in do_usemethod /home/hornik/src/R/src/main/objects.c:579:9 #53 0x7fadcaee48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #54 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #55 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #56 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #57 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #58 0x7fadcaea69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #59 0x7fadcaea69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #60 0x7fadcaebf365 in do_set /home/hornik/src/R/src/main/eval.c:3571:8 #61 0x7fadcaea641b in Rf_eval /home/hornik/src/R/src/main/eval.c:1232:12 #62 0x7fadcaec4d52 in do_eval /home/hornik/src/R/src/main/eval.c:3945:13 #63 0x7fadcaef32b9 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #64 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #65 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #66 0x7fadcaea7f4f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #67 0x7fadcaea68e7 in Rf_eval /home/hornik/src/R/src/main/eval.c:1187:6 #68 0x7fadcaec6627 in do_withVisible /home/hornik/src/R/src/main/eval.c:3988:9 #69 0x7fadcb039cd2 in do_internal /home/hornik/src/R/src/main/names.c:1411:11 #70 0x7fadcaee48a2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #71 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #72 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #73 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #74 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #75 0x7fadcaea69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #76 0x7fadcaea69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #77 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #78 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #79 0x7fadcaefe0ad in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #80 0x7fadcaefe0ad in bcEval_loop /home/hornik/src/R/src/main/eval.c:8093:16 #81 0x7fadcaea7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #82 0x7fadcaea604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #83 0x7fadcaeb07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #84 0x7fadcaeac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #85 0x7fadcaea69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #86 0x7fadcaea69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #87 0x7fadcafea3a7 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #88 0x7fadcafed1c0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #89 0x7fadcafecfe4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #90 0x7fadcafed28a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #91 0x560465a76dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #92 0x7fadca233d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #93 0x7fadca233e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #94 0x560465993370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) Address 0x7fadc5e58900 is located in stack of thread T0 at offset 256 in frame #0 0x7fada83b6977 in PointRectCov /home/hornik/tmp/scratch/RtmpxKCfyr/R.INSTALL288a235d76ea0d/constrainedKriging/src/point_block_cov.c:115 This frame has 6 object(s): [32, 40) 'res' (line 122) [64, 192) 'sc_pixcoords' (line 127) [224, 256) 'setlowerbound' (line 142) <== Memory access at offset 256 overflows this variable [288, 320) 'setupperbound' (line 144) [352, 384) 'pixelarea' (line 152) [416, 464) 'pcp' (line 170) HINT: this may be a false positive if your program uses some custom stack unwind mechanism, swapcontext or vfork (longjmp and C++ exceptions *are* supported) SUMMARY: AddressSanitizer: stack-buffer-overflow /home/hornik/tmp/scratch/RtmpxKCfyr/R.INSTALL288a235d76ea0d/constrainedKriging/src/point_block_cov.c:403:12 in PointRectCov Shadow bytes around the buggy address: 0x7fadc5e58680: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fadc5e58700: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fadc5e58780: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fadc5e58800: f1 f1 f1 f1 00 f2 f2 f2 00 00 00 00 00 00 00 00 0x7fadc5e58880: 00 00 00 00 00 00 00 00 f2 f2 f2 f2 00 00 00 00 =>0x7fadc5e58900:[f2]f2 f2 f2 00 00 00 00 f2 f2 f2 f2 00 00 00 00 0x7fadc5e58980: f2 f2 f2 f2 00 00 00 00 00 00 f3 f3 f3 f3 f3 f3 0x7fadc5e58a00: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fadc5e58a80: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fadc5e58b00: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7fadc5e58b80: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==2662528==ABORTING * checking PDF version of manual ... [9s/9s] OK * checking HTML version of manual ... [11s/11s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR