Package check result: ERROR Check: re-building of vignette outputs, Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘georob_vignette.Rnw’ using Sweave Loading required package: sp Attaching package: ‘georob’ The following object is masked from ‘package:stats’: step recomputing robust Mahalanobis distances saving the robust distances 'MD' as part of ‘r.lmrob’ ================================================================= ==1866164==ERROR: AddressSanitizer: stack-buffer-overflow on address 0x7f385f4fd300 at pc 0x7f38409e592f bp 0x7ffdc08222b0 sp 0x7ffdc08222a8 READ of size 8 at 0x7f385f4fd300 thread T0 #0 0x7f38409e592e in PointRectCov /home/hornik/tmp/scratch/Rtmpn0vyWA/R.INSTALL1bfe54587590aa/constrainedKriging/src/point_block_cov.c:403:12 #1 0x7f38643b54f3 in do_dotCode /home/hornik/src/R/src/main/dotcode.c #2 0x7f38644ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #3 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #6 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #7 0x7f38644a866f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #8 0x7f38644a866f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #9 0x7f386415d085 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #10 0x7f38646342a2 in do_internal /home/hornik/src/R/src/main/names.c:1410:11 #11 0x7f38644dee72 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #12 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7f38644a866f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7f38644a866f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #18 0x7f386415d085 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #19 0x7f38646342a2 in do_internal /home/hornik/src/R/src/main/names.c:1410:11 #20 0x7f38644dee72 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #21 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #22 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #23 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #24 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #25 0x7f38644a866f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #26 0x7f38644a866f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #27 0x7f386415d085 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #28 0x7f38646342a2 in do_internal /home/hornik/src/R/src/main/names.c:1410:11 #29 0x7f38644dee72 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #30 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #31 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #32 0x7f38644a251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #33 0x7f38644a074e in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #34 0x7f386463e5ce in do_usemethod /home/hornik/src/R/src/main/objects.c:575:16 #35 0x7f38644dee72 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #36 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #37 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #38 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #39 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #40 0x7f38644a866f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #41 0x7f38644a866f in R_forceAndCall /home/hornik/src/R/src/main/eval.c:2460:8 #42 0x7f386415d085 in do_lapply /home/hornik/src/R/src/main/apply.c:75:8 #43 0x7f38646342a2 in do_internal /home/hornik/src/R/src/main/names.c:1410:11 #44 0x7f38644dee72 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #45 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #46 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #47 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #48 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #49 0x7f38644a49c0 in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #50 0x7f386463d6f2 in dispatchMethod /home/hornik/src/R/src/main/objects.c:473:16 #51 0x7f386463ba85 in Rf_usemethod /home/hornik/src/R/src/main/objects.c:513:10 #52 0x7f386463e7ac in do_usemethod /home/hornik/src/R/src/main/objects.c:579:9 #53 0x7f38644dee72 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #54 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #55 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #56 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #57 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #58 0x7f38644a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #59 0x7f38644a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #60 0x7f38644a251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #61 0x7f386453d8af in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #62 0x7f386450d376 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #63 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #64 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #65 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #66 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #67 0x7f38644a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #68 0x7f38644a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #69 0x7f38644bf322 in do_eval /home/hornik/src/R/src/main/eval.c:3945:13 #70 0x7f38644ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #71 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #72 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #73 0x7f38644a251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #74 0x7f38644a0eb7 in Rf_eval /home/hornik/src/R/src/main/eval.c:1187:6 #75 0x7f38644c0bf7 in do_withVisible /home/hornik/src/R/src/main/eval.c:3988:9 #76 0x7f38646342a2 in do_internal /home/hornik/src/R/src/main/names.c:1410:11 #77 0x7f38644dee72 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8142:15 #78 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #79 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #80 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #81 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #82 0x7f38644a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #83 0x7f38644a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #84 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #85 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #86 0x7f38644f867d in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #87 0x7f38644f867d in bcEval_loop /home/hornik/src/R/src/main/eval.c:8093:16 #88 0x7f38644a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #89 0x7f38644a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #90 0x7f38644aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #91 0x7f38644a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #92 0x7f38644a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #93 0x7f38644a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #94 0x7f38645e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #95 0x7f38645e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #96 0x7f38645e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #97 0x7f38645e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #98 0x561d9e2d4dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #99 0x7f3863833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #100 0x7f3863833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #101 0x561d9e1f1370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) Address 0x7f385f4fd300 is located in stack of thread T0 at offset 256 in frame #0 0x7f38409e3977 in PointRectCov /home/hornik/tmp/scratch/Rtmpn0vyWA/R.INSTALL1bfe54587590aa/constrainedKriging/src/point_block_cov.c:115 This frame has 6 object(s): [32, 40) 'res' (line 122) [64, 192) 'sc_pixcoords' (line 127) [224, 256) 'setlowerbound' (line 142) <== Memory access at offset 256 overflows this variable [288, 320) 'setupperbound' (line 144) [352, 384) 'pixelarea' (line 152) [416, 464) 'pcp' (line 170) HINT: this may be a false positive if your program uses some custom stack unwind mechanism, swapcontext or vfork (longjmp and C++ exceptions *are* supported) SUMMARY: AddressSanitizer: stack-buffer-overflow /home/hornik/tmp/scratch/Rtmpn0vyWA/R.INSTALL1bfe54587590aa/constrainedKriging/src/point_block_cov.c:403:12 in PointRectCov Shadow bytes around the buggy address: 0x7f385f4fd080: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7f385f4fd100: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7f385f4fd180: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7f385f4fd200: f1 f1 f1 f1 00 f2 f2 f2 00 00 00 00 00 00 00 00 0x7f385f4fd280: 00 00 00 00 00 00 00 00 f2 f2 f2 f2 00 00 00 00 =>0x7f385f4fd300:[f2]f2 f2 f2 00 00 00 00 f2 f2 f2 f2 00 00 00 00 0x7f385f4fd380: f2 f2 f2 f2 00 00 00 00 00 00 f3 f3 f3 f3 f3 f3 0x7f385f4fd400: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7f385f4fd480: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7f385f4fd500: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 0x7f385f4fd580: f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 f5 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==1866164==ABORTING Post-processing issues found: File: build_vignettes.log ==1866164==ERROR: AddressSanitizer: stack-buffer-overflow on address 0x7f385f4fd300 at pc 0x7f38409e592f bp 0x7ffdc08222b0 sp 0x7ffdc08222a8 SUMMARY: AddressSanitizer: stack-buffer-overflow /home/hornik/tmp/scratch/Rtmpn0vyWA/R.INSTALL1bfe54587590aa/constrainedKriging/src/point_block_cov.c:403:12 in PointRectCov ASan internal: fe File: 00check.log ==1866164==ERROR: AddressSanitizer: stack-buffer-overflow on address 0x7f385f4fd300 at pc 0x7f38409e592f bp 0x7ffdc08222b0 sp 0x7ffdc08222a8 SUMMARY: AddressSanitizer: stack-buffer-overflow /home/hornik/tmp/scratch/Rtmpn0vyWA/R.INSTALL1bfe54587590aa/constrainedKriging/src/point_block_cov.c:403:12 in PointRectCov ASan internal: fe