* using log directory ‘/srv/hornik/tmp/CRAN_pretest/geoflow.Rcheck’
* using R Under development (unstable) (2025-10-07 r88905)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘geoflow/DESCRIPTION’ ... OK
* this is package ‘geoflow’ version ‘1.0.0’
* checking CRAN incoming feasibility ... [4s/11s] NOTE
Maintainer: ‘Emmanuel Blondel <emmanuel.blondel1@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  DataVerse (17:6)
  Findable (7:4)
  Geospatial (4:20)
  eg (12:4, 12:60, 13:85, 13:122, 13:170, 18:23)
  geospatial (10:168, 11:25, 12:146)

Found the following (possibly) invalid URLs:
  URL: https://github.com/r-geoflow-/geoflow
    From: README.md
    Status: 404
    Message: Not Found
  URL: https://www.ogc.org/standards (moved to https://www.ogc.org/standards/)
    From: DESCRIPTION
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

The BugReports field in DESCRIPTION has
  https://github.com/r-geoflow/geoflow
which should likely be
  https://github.com/r-geoflow/geoflow/issues
instead.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘geoflow’ can be installed ... [82s/94s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [25s/30s] OK
* checking whether the package can be loaded with stated dependencies ... [24s/27s] OK
* checking whether the package can be unloaded cleanly ... [24s/44s] OK
* checking whether the namespace can be loaded with stated dependencies ... [24s/31s] OK
* checking whether the namespace can be unloaded cleanly ... [24s/29s] OK
* checking loading without being on the library search path ... [23s/27s] OK
* checking whether startup messages can be suppressed ... [24s/29s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [103s/116s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geoflowLogger.Rd: R6Class
  geoflow_action.Rd: R6Class
  geoflow_contact.Rd: R6Class
  geoflow_data.Rd: R6Class
  geoflow_data_accessor.Rd: R6Class
  geoflow_date.Rd: R6Class
  geoflow_dictionary.Rd: R6Class
  geoflow_dimension.Rd: R6Class
  geoflow_entity.Rd: R6Class
  geoflow_featuremember.Rd: R6Class
  geoflow_featuretype.Rd: R6Class
  geoflow_format.Rd: R6Class
  geoflow_handler.Rd: R6Class
  geoflow_keyword.Rd: R6Class
  geoflow_kvp.Rd: R6Class
  geoflow_process.Rd: R6Class
  geoflow_profile.Rd: R6Class
  geoflow_provenance.Rd: R6Class
  geoflow_register.Rd: R6Class
  geoflow_relation.Rd: R6Class
  geoflow_right.Rd: R6Class
  geoflow_skos_vocabulary.Rd: R6Class
  geoflow_software.Rd: R6Class
  geoflow_subject.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'build_hierarchical_list.Rd':
build_hierarchical_list
  Code: function(parent, relationships)
  Docs: function(data, parent)
  Argument names in code not in docs:
    relationships
  Argument names in docs not in code:
    data
  Mismatches in argument names:
    Position: 1 Code: parent Docs: data
    Position: 2 Code: relationships Docs: parent

Codoc mismatches from Rd file 'precompute_relationships.Rd':
precompute_relationships
  Code: function(data, parent_key, child_key, child_label)
  Docs: function(data, parent_key, child_key)
  Argument names in code not in docs:
    child_label

* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'build_hierarchical_list.Rd'
  ‘data’
Documented arguments not in \usage in Rd file 'build_hierarchical_list.Rd':
  ‘relationships’

Documented arguments not in \usage in Rd file 'precompute_relationships.Rd':
  ‘child_label’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [33s/41s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [36s/56s] OK
  Running ‘test-all.R’ [36s/56s]
* checking PDF version of manual ... [7s/7s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs