* using log directory ‘/srv/hornik/tmp/CRAN_pretest/genomicper.Rcheck’
* using R Under development (unstable) (2026-02-20 r89444)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1+b1)
    Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-02-21 14:03:05 UTC
* checking for file ‘genomicper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomicper’ version ‘1.8’
* checking CRAN incoming feasibility ... [2s/2s] NOTE
Maintainer: ‘Claudia Cabrera <c.cabrera@qmul.ac.uk>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Genomicper (14:861)
  permutated (14:810)
  polymorphisms (14:230)
  pre (14:838)

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘Cabrera et al (2012) <doi’

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2026-02-21 as issues were not corrected
    despite reminders.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘genomicper’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    ‘Claudia P. Cabrera, Pau Navarro, Chris S.Haley’
  Authors@R: ‘Claudia Cabrera [aut, cre], Pau Navarro [aut], Chris Haley [aut]’

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [2s/2s] OK
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [1s/1s] NOTE
Found the following HTML validation problems:
genomicper.html:75:26 (NA:47): Warning: <doi:> attribute "/td" lacks value
genomicper.html:75:26 (NA:47): Error: <doi:> is not recognized!
genomicper.html:75:26 (NA:47): Warning: discarding unexpected <doi:>
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs