R version 4.4.0 alpha (2024-03-26 r86209 ucrt) Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(genieBPC) > > test_check("genieBPC") ! The OncoTree code inputted does not exist in the data and will be ignored. OncoTree codes will not be used to select a unique next generation sequencing panel for each patient. [ FAIL 0 | WARN 0 | SKIP 29 | PASS 55 ] ══ Skipped tests (29) ══════════════════════════════════════════════════════════ • .is_connected_to_genie() is not TRUE (23): 'test-create_analytic_cohort.R:159:3', 'test-create_analytic_cohort.R:175:3', 'test-create_analytic_cohort.R:213:3', 'test-create_analytic_cohort.R:246:3', 'test-create_analytic_cohort.R:274:3', 'test-create_analytic_cohort.R:322:3', 'test-create_analytic_cohort.R:370:3', 'test-create_analytic_cohort.R:411:3', 'test-create_analytic_cohort.R:480:3', 'test-create_analytic_cohort.R:502:3', 'test-create_analytic_cohort.R:597:3', 'test-create_analytic_cohort.R:747:3', 'test-create_analytic_cohort.R:846:3', 'test-create_analytic_cohort.R:916:3', 'test-create_analytic_cohort.R:934:3', 'test-create_analytic_cohort.R:946:3', 'test-create_analytic_cohort.R:973:3', 'test-pull_data_synapse.R:49:3', 'test-pull_data_synapse.R:69:3', 'test-pull_data_synapse.R:111:3', 'test-pull_data_synapse.R:147:3', 'test-pull_data_synapse.R:348:3', 'test-synapse_version.R:3:3' • genieBPC:::.is_connected_to_genie() is not TRUE (6): 'test-drug_regimen_sunburst.R:28:3', 'test-drug_regimen_sunburst.R:36:3', 'test-drug_regimen_sunburst.R:48:3', 'test-drug_regimen_sunburst.R:56:3', 'test-drug_regimen_sunburst.R:92:3', 'test-select_unique_ngs.R:62:3' [ FAIL 0 | WARN 0 | SKIP 29 | PASS 55 ] > > proc.time() user system elapsed 3.68 0.29 3.96