* using log directory ‘/srv/hornik/tmp/CRAN/genetic.algo.optimizeR.Rcheck’ * using R Under development (unstable) (2024-02-08 r85876) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘genetic.algo.optimizeR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘genetic.algo.optimizeR’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘The package maintainer ’ New submission Possibly misspelled words in DESCRIPTION: Algorthim (3:16) Unknown, possibly misspelled, fields in DESCRIPTION: ‘home’ Package has a VignetteBuilder field but no prebuilt vignette index. DESCRIPTION fields with placeholder content: Maintainer: The package maintainer * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... WARNING Found the following file with a non-portable file name: vignettes/figures/theory-initial_poputation, selection-1.png These are not fully portable file names. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘genetic.algo.optimizeR’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Maintainer field differs from that derived from Authors@R Maintainer: ‘The package maintainer ’ Authors@R: ‘Dany Mukesha ’ * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘logo.R’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] NOTE initialize_population: no visible global function definition for ‘runif’ mutation: no visible global function definition for ‘runif’ mutation: no visible global function definition for ‘rnorm’ Undefined global functions or variables: rnorm runif Consider adding importFrom("stats", "rnorm", "runif") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Unknown package ‘evaluate_fitness’ in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'crossover.Rd' ‘parents’ Documented arguments not in \usage in Rd file 'crossover.Rd': ‘selected_parents’ Undocumented arguments in Rd file 'replacement.Rd' ‘offspring’ Documented arguments not in \usage in Rd file 'replacement.Rd': ‘mutated_offspring’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘explaining_graph.Rmd’ ‘explaining_graph.md’ ‘figures/theory-fitting_plot-1.png’ ‘figures/theory-initial_poputation, selection-1.png’ ‘figures/theory-initial_poputation-1.png’ ‘figures/theory-plot_intercepts-1.png’ ‘figures/theory-selection-1.png’ ‘introduction.Rmd’ ‘introduction.md’ ‘theory.Rmd’ ‘theory.md’ Files named as vignettes but with no recognized vignette engine: ‘vignettes/explaining_graph.Rmd’ ‘vignettes/introduction.Rmd’ ‘vignettes/theory.Rmd’ (Is a VignetteBuilder field missing?) * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] OK Running ‘testthat.R’ [1s/1s] * checking package vignettes ... NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 WARNINGs, 6 NOTEs