* using log directory ‘/srv/hornik/tmp/CRAN_pretest/gedi2.Rcheck’
* using R Under development (unstable) (2026-02-18 r89435)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1+b1)
    Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-02-19 04:58:05 UTC
* checking for file ‘gedi2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gedi2’ version ‘2.3.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [2s/3s] NOTE
Maintainer: ‘Arsham Mikaeili Namini <arsham.mikaeilinamini@mail.mcgill.ca>’

New submission

Possibly misspelled words in DESCRIPTION:
  al (16:104)
  et (16:101)

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘<doi’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gedi2’ can be installed ... [67s/67s] OK
* used C++ compiler: ‘Debian clang version 21.1.8 (3)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... NOTE
Invalid package aliases in Rd file 'gedi-package.Rd':
  ‘gedi-package’
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: ‘gedi’
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [13s/13s] OK
  Running ‘testthat.R’ [13s/13s]
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] NOTE
Found the following HTML validation problems:
gedi2.html:83:5 (NA:49): Warning: <doi:> attribute "/td" lacks value
gedi2.html:83:5 (NA:49): Error: <doi:> is not recognized!
gedi2.html:83:5 (NA:49): Warning: discarding unexpected <doi:>
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 4 NOTEs