downloading reverse dependencies ‘arete’ trying URL 'file:///data/Repositories/CRAN/src/contrib/arete_0.1.tar.gz' Content type 'unknown' length 866149 bytes (845 KB) ================================================== installing dependencies ‘biomod2’, ‘cld2’, ‘fedmatch’, ‘gecko’, ‘red’ also installing the dependencies ‘BAT’, ‘predicts’ begin installing package ‘BAT’ begin installing package ‘predicts’ begin installing package ‘biomod2’ begin installing package ‘cld2’ begin installing package ‘fedmatch’ * installing *source* package ‘fedmatch’ ... ** this is package ‘fedmatch’ version ‘2.1.0’ ** package ‘fedmatch’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpujr8lu/R.INSTALLe233a314ccbde/fedmatch/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DBOOST_NO_AUTO_PTR -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DBOOST_NO_AUTO_PTR -fpic -g -O2 -Wall -pedantic -mtune=native -c wgt_jaccard.cpp -o wgt_jaccard.o In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/range/concepts.hpp:26, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/range/size_type.hpp:20, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/range/size.hpp:21, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/range/functions.hpp:20, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/range/iterator_range_core.hpp:41, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/range/iterator_range.hpp:13, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/range/as_literal.hpp:18, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/algorithm/string/trim.hpp:19, from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/algorithm/string.hpp:19, from wgt_jaccard.cpp:4: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fedmatch.so RcppExports.o wgt_jaccard.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpujr8lu/R.INSTALLe233a314ccbde/fedmatch/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fedmatch/00new/fedmatch/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fedmatch) * installing *source* package ‘cld2’ ... ** this is package ‘cld2’ version ‘1.2.6’ ** package ‘cld2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKJxqnL/R.INSTALLe233c12f1b857/cld2/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.cpp -o wrapper.o wrapper.cpp: In function ‘Rcpp::CharacterVector detect_language_cc(Rcpp::CharacterVector, bool, bool)’: wrapper.cpp:12:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 12 | for(size_t i = 0; i < input.length(); i++){ | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cldutil.cc -o libcld2/internal/cldutil.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cldutil_shared.cc -o libcld2/internal/cldutil_shared.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det.cc -o libcld2/internal/compact_lang_det.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det_hint_code.cc -o libcld2/internal/compact_lang_det_hint_code.o libcld2/internal/compact_lang_det_hint_code.cc: In function ‘std::string CLD2::TrimCLDLangTagsHint(const std::string&)’: libcld2/internal/compact_lang_det_hint_code.cc:1060:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1060 | if (comma == string::npos) {comma = langtags.size();} // fake trailing comma | ~~~~~~^~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_hint_code.cc: In function ‘void CLD2::SetCLDLangTagsHint(const std::string&, CLDLangPriors*)’: libcld2/internal/compact_lang_det_hint_code.cc:1403:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1403 | if (comma == string::npos) {comma = langtags.size();} // fake trailing comma | ~~~~~~^~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det_impl.cc -o libcld2/internal/compact_lang_det_impl.o libcld2/internal/compact_lang_det_impl.cc: In function ‘void CLD2::CalcSummaryLang(DocTote*, int, const int*, const Language*, const int*, Language*, bool*, bool, bool, int)’: libcld2/internal/compact_lang_det_impl.cc:1455:7: warning: unused variable ‘plang_second’ [-Wunused-variable] 1455 | int plang_second = PerScriptNumber(ULScript_Latin, language3[active_slot[1]]); | ^~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc: In function ‘CLD2::Language CLD2::DetectLanguageSummaryV2(const char*, int, bool, const CLDHints*, bool, int, Language, Language*, int*, double*, ResultChunkVector*, int*, bool*)’: libcld2/internal/compact_lang_det_impl.cc:1849:14: warning: unused variable ‘ulscript’ [-Wunused-variable] 1849 | ULScript ulscript = scriptspan.ulscript; | ^~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1788:7: warning: unused variable ‘next_other_tote’ [-Wunused-variable] 1788 | int next_other_tote = 2; | ^~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1789:7: warning: unused variable ‘tote_num’ [-Wunused-variable] 1789 | int tote_num = 0; | ^~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1793:8: warning: unused variable ‘tote_seen’ [-Wunused-variable] 1793 | bool tote_seen[4] = {false, false, false, false}; | ^~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1794:7: warning: unused variable ‘tote_grams’ [-Wunused-variable] 1794 | int tote_grams[4] = {0, 0, 0, 0}; // Number in partial chunk | ^~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1795:12: warning: unused variable ‘tote_script’ [-Wunused-variable] 1795 | ULScript tote_script[4] = | ^~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1814:7: warning: unused variable ‘advance_by’ [-Wunused-variable] 1814 | int advance_by = 2; // Advance 2 bytes | ^~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1815:7: warning: unused variable ‘advance_limit’ [-Wunused-variable] 1815 | int advance_limit = textlimit >> 3; // For first 1/8 of max document | ^~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1817:7: warning: variable ‘initial_word_span’ set but not used [-Wunused-but-set-variable] 1817 | int initial_word_span = kDefaultWordSpan; | ^~~~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1828:7: warning: unused variable ‘chunksizeunis’ [-Wunused-variable] 1828 | int chunksizeunis = (chunksizequads * 5) >> 1; | ^~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1832:7: warning: unused variable ‘spantooshortlimit’ [-Wunused-variable] 1832 | int spantooshortlimit = kShortSpanThresh; | ^~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/debug.cc -o libcld2/internal/debug.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/fixunicodevalue.cc -o libcld2/internal/fixunicodevalue.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_entities.cc -o libcld2/internal/generated_entities.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_language.cc -o libcld2/internal/generated_language.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_ulscript.cc -o libcld2/internal/generated_ulscript.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/getonescriptspan.cc -o libcld2/internal/getonescriptspan.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/lang_script.cc -o libcld2/internal/lang_script.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/offsetmap.cc -o libcld2/internal/offsetmap.o libcld2/internal/offsetmap.cc: In member function ‘void CLD2::OffsetMap::Printmap(const char*)’: libcld2/internal/offsetmap.cc:84:43: warning: array subscript has type ‘char’ [-Wchar-subscripts] 84 | fprintf(fout, "%c%02d ", "&=+-"[OpPart(diffs_[i])], LenPart(diffs_[i])); | ~~~~~~^~~~~~~~~~~ libcld2/internal/offsetmap.cc: In member function ‘void CLD2::OffsetMap::DumpString()’: libcld2/internal/offsetmap.cc:210:45: warning: array subscript has type ‘char’ [-Wchar-subscripts] 210 | fprintf(stderr, "%c%02d ", "&=+-"[OpPart(diffs_[i])], LenPart(diffs_[i])); | ~~~~~~^~~~~~~~~~~ libcld2/internal/offsetmap.cc: In member function ‘bool CLD2::OffsetMap::MoveLeft()’: libcld2/internal/offsetmap.cc:404:8: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 404 | bool retval = true; | ^~~~~~ libcld2/internal/offsetmap.cc: In static member function ‘static bool CLD2::OffsetMap::CopyInserts(CLD2::OffsetMap*, CLD2::OffsetMap*)’: libcld2/internal/offsetmap.cc:484:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 484 | while (ok && (source->next_diff_sub_ != source->diffs_.size())) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ libcld2/internal/offsetmap.cc: In static member function ‘static bool CLD2::OffsetMap::CopyDeletes(CLD2::OffsetMap*, CLD2::OffsetMap*)’: libcld2/internal/offsetmap.cc:498:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 498 | while (ok && (source->next_diff_sub_ != source->diffs_.size())) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/scoreonescriptspan.cc -o libcld2/internal/scoreonescriptspan.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/tote.cc -o libcld2/internal/tote.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/utf8statetable.cc -o libcld2/internal/utf8statetable.o libcld2/internal/utf8statetable.cc: In function ‘int CLD2::UTF8GenericReplaceInternalTwoByte(const UTF8ReplaceObj_2*, const StringPiece&, StringPiece&, bool, int*, int*, int*, OffsetMap*)’: libcld2/internal/utf8statetable.cc:905:7: warning: variable ‘src_lll’ set but not used [-Wunused-but-set-variable] 905 | int src_lll = srclimit - src; | ^~~~~~~ libcld2/internal/utf8statetable.cc:906:7: warning: variable ‘dst_lll’ set but not used [-Wunused-but-set-variable] 906 | int dst_lll = dstlimit - dst; | ^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_cjk_uni_prop_80.cc -o libcld2/internal/cld_generated_cjk_uni_prop_80.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_cjk_compatible.cc -o libcld2/internal/cld2_generated_cjk_compatible.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_cjk_delta_bi_4.cc -o libcld2/internal/cld_generated_cjk_delta_bi_4.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_distinct_bi_0.cc -o libcld2/internal/generated_distinct_bi_0.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_quadchrome_2.cc -o libcld2/internal/cld2_generated_quadchrome_2.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_deltaoctachrome.cc -o libcld2/internal/cld2_generated_deltaoctachrome.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_distinctoctachrome.cc -o libcld2/internal/cld2_generated_distinctoctachrome.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_score_quad_octa_2.cc -o libcld2/internal/cld_generated_score_quad_octa_2.o ar rcs libcld2/libstatcld2.a libcld2/internal/cldutil.o libcld2/internal/cldutil_shared.o libcld2/internal/compact_lang_det.o libcld2/internal/compact_lang_det_hint_code.o libcld2/internal/compact_lang_det_impl.o libcld2/internal/debug.o libcld2/internal/fixunicodevalue.o libcld2/internal/generated_entities.o libcld2/internal/generated_language.o libcld2/internal/generated_ulscript.o libcld2/internal/getonescriptspan.o libcld2/internal/lang_script.o libcld2/internal/offsetmap.o libcld2/internal/scoreonescriptspan.o libcld2/internal/tote.o libcld2/internal/utf8statetable.o libcld2/internal/cld_generated_cjk_uni_prop_80.o libcld2/internal/cld2_generated_cjk_compatible.o libcld2/internal/cld_generated_cjk_delta_bi_4.o libcld2/internal/generated_distinct_bi_0.o libcld2/internal/cld2_generated_quadchrome_2.o libcld2/internal/cld2_generated_deltaoctachrome.o libcld2/internal/cld2_generated_distinctoctachrome.o libcld2/internal/cld_generated_score_quad_octa_2.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o cld2.so RcppExports.o wrapper.o -Llibcld2 -lstatcld2 -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKJxqnL/R.INSTALLe233c12f1b857/cld2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cld2/00new/cld2/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cld2) * installing *source* package ‘predicts’ ... ** this is package ‘predicts’ version ‘0.1-19’ ** package ‘predicts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (predicts) * installing *source* package ‘BAT’ ... ** this is package ‘BAT’ version ‘2.11.1’ ** package ‘BAT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAT) begin installing package ‘red’ * installing *source* package ‘biomod2’ ... ** this is package ‘biomod2’ version ‘4.3-4-5’ ** package ‘biomod2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘cito’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package can be loaded from final location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘cito’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package keeps a record of temporary installation path * DONE (biomod2) * installing *source* package ‘red’ ... ** this is package ‘red’ version ‘1.6.3’ ** package ‘red’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (red) begin installing package ‘gecko’ * installing *source* package ‘gecko’ ... ** this is package ‘gecko’ version ‘1.0.3’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gecko) checking gecko_1.0.3.tar.gz ... checking arete_0.1.tar.gz ... Depends: Package: gecko Depends: R (>= 4.1.0) Imports: terra, sp, grDevices, graphics, stats, utils, geosphere, methods, red, biomod2, kernlab, ggplot2, sf, stringr, rlang Timings: user system elapsed gecko 259.689 17.144 279.851 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 1 Check results summary: gecko ... NOTE * checking CRAN incoming feasibility ... [4s/7s] NOTE rdepends_arete ... OK