# GammaSpectrum ================================================================ test_that("Plot GammaSpectrum", { testthat::skip_if_not_installed("vdiffr") spc_file_cnf <- system.file("extdata/LaBr.CNF", package = "gamma") spc_cnf <- read(spc_file_cnf) gg_spectrum_channel <- plot(spc_cnf, xaxis = "channel") vdiffr::expect_doppelganger("spectrum_channel", gg_spectrum_channel) gg_spectrum_energy <- plot(spc_cnf, xaxis = "energy") vdiffr::expect_doppelganger("spectrum_energy", gg_spectrum_energy) gg_spectrum_count <- plot(spc_cnf, yaxis = "count") vdiffr::expect_doppelganger("spectrum_count", gg_spectrum_count) gg_spectrum_rate <- plot(spc_cnf, yaxis = "rate") vdiffr::expect_doppelganger("spectrum_rate", gg_spectrum_rate) spc_file_tka <- system.file("extdata/LaBr.TKA", package = "gamma") spc_tka <- read(spc_file_tka) expect_warning(plot(spc_tka, xaxis = "energy"), "The energy scale is missing, displaying channels instead.") }) test_that("Plot GammaSpectrum and PeakPosition", { testthat::skip_if_not_installed("vdiffr") spc_file <- system.file("extdata/LaBr.CNF", package = "gamma") spc_cnf <- read(spc_file) peaks <- peaks_find(spc_cnf) ## plot the expected values we have from peaks peaks@energy_expected <- c(113,1461) gg_peaks <- plot(spc_cnf, peaks) vdiffr::expect_doppelganger("spectrum_peaks_expected", gg_peaks) ## remove expected values and plot the alternative peaks@energy_expected <- c(NA_integer_,NA_integer_) gg_peaks <- plot(spc_cnf, peaks) vdiffr::expect_doppelganger("spectrum_peaks_observed", gg_peaks) peaks@hash <- paste0(rep("x", 32), collapse = "") expect_error(plot(spc_cnf, peaks), "`x` and `y` do not match.") }) # GammaSpectra ================================================================= test_that("Plot GammaSpectra", { testthat::skip_if_not_installed("vdiffr") spc_dir <- system.file("extdata/", package = "gamma") spectra <- read(spc_dir)[-1] for (i in c(TRUE, FALSE)) { gg_spectra <- plot(spectra, facet = i) vdiffr::expect_doppelganger(paste0("spectra_facet-", i), gg_spectra) } spc_file <- system.file("extdata/LaBr.TKA", package = "gamma") spectrum <- methods::as(read(spc_file), "GammaSpectra") expect_warning(plot(spectrum, xaxis = "energy"), "The energy scale is missing for one or more spectra") }) # Baseline ===================================================================== test_that("Plot Baseline from GammaSpectrum", { testthat::skip_if_not_installed("vdiffr") spc_file <- system.file("extdata/LaBr.CNF", package = "gamma") spectrum <- signal_slice(read(spc_file), -(1:40)) baseline <- signal_baseline(spectrum) gg_baseline_count <- plot(baseline, yaxis = "count") vdiffr::expect_doppelganger("baseline_count", gg_baseline_count) gg_baseline_rate <- plot(baseline, yaxis = "rate") vdiffr::expect_doppelganger("baseline_rate", gg_baseline_rate) gg_baseline_spc <- plot(spectrum, baseline) vdiffr::expect_doppelganger("baseline_spectrum", gg_baseline_spc) correct <- signal_correct(spectrum) gg_correct_count <- plot(correct, yaxis = "count") vdiffr::expect_doppelganger("baseline_correct_count", gg_correct_count) gg_correct_rate <- plot(correct, yaxis = "rate") vdiffr::expect_doppelganger("baseline_correct_rate", gg_correct_rate) }) test_that("Plot Baseline from GammaSpectra", { testthat::skip_if_not_installed("vdiffr") spc_dir <- system.file("extdata/BDX_LaBr_1/calibration", package = "gamma") spectra <- signal_slice(read(spc_dir), -c(1:40)) baseline <- signal_baseline(spectra) gg_baselines_count <- plot(baseline, yaxis = "count") vdiffr::expect_doppelganger("baselines_count", gg_baselines_count) gg_baselines_rate <- plot(baseline, yaxis = "rate") vdiffr::expect_doppelganger("baselines_rate", gg_baselines_rate) correct <- signal_correct(spectra) gg_correct_count <- plot(correct, yaxis = "count") vdiffr::expect_doppelganger("baselines_correct_count", gg_correct_count) gg_correct_rate <- plot(correct, yaxis = "rate") vdiffr::expect_doppelganger("baselines_correct_rate", gg_correct_rate) }) # CalibrationCurve ============================================================= test_that("Plot CalibrationCurve", { testthat::skip_if_not_installed("vdiffr") data("BDX_LaBr_1") for (i in c(TRUE, FALSE)) { gg_calibration <- plot(BDX_LaBr_1, error_ellipse = i) vdiffr::expect_doppelganger(paste0("gg_calib_ellipse-", i), gg_calibration) } for (i in c(TRUE, FALSE)) { gg_calibration <- plot(BDX_LaBr_1, error_bar = i) vdiffr::expect_doppelganger(paste0("gg_calib_bar-", i), gg_calibration) } for (i in c(TRUE, FALSE)) { gg_calibration <- plot(BDX_LaBr_1, energy = i) vdiffr::expect_doppelganger(paste0("gg_calib_energy-", i), gg_calibration) } })