test_that("Initialize an empty GammaSpectrum instance", { spectrum <- new("GammaSpectrum") expect_output(show(spectrum), "An empty gamma spectrum") expect_identical(spectrum[["hash"]], "xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx") expect_identical(spectrum[["name"]], character(0)) expect_s3_class(spectrum[["date"]], "POSIXct") expect_identical(spectrum[["instrument"]], character(0)) expect_identical(spectrum[["file_format"]], character(0)) expect_identical(spectrum[["live_time"]], numeric(0)) expect_identical(spectrum[["real_time"]], numeric(0)) expect_identical(spectrum[["channel"]], integer(0)) expect_identical(spectrum[["energy"]], numeric(0)) expect_identical(spectrum[["count"]], numeric(0)) expect_identical(spectrum[["rate"]], numeric(0)) expect_null(spectrum[["calibration"]]) expect_error(spectrum[["X"]]) }) test_that("Initialize an empty GammaSpectra instance", { expect_s4_class(new("GammaSpectra"), "list") spectra <- new("GammaSpectra") expect_output(show(spectra), "An empty set of gamma spectra") }) test_that("Initialize an empty BaseLine instance", { baseline <- new("Baseline") expect_output(show(baseline), "An empty gamma spectrum") expect_identical(baseline[["hash"]], "xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx") expect_identical(baseline[["name"]], character(0)) expect_s3_class(baseline[["date"]], "POSIXct") expect_identical(baseline[["instrument"]], character(0)) expect_identical(baseline[["file_format"]], character(0)) expect_identical(baseline[["live_time"]], numeric(0)) expect_identical(baseline[["real_time"]], numeric(0)) expect_identical(baseline[["channel"]], integer(0)) expect_identical(baseline[["energy"]], numeric(0)) expect_identical(baseline[["count"]], numeric(0)) expect_identical(baseline[["rate"]], numeric(0)) expect_null(baseline[["calibration"]]) expect_error(baseline[["X"]]) }) test_that("Initialize an empty DoseRateModel instance", { dose <- new("DoseRateModel") expect_output(show(dose), "") expect_identical(dose[["slope"]], numeric(0)) expect_identical(dose[["intercept"]], numeric(0)) expect_identical(dose[["covariance"]], numeric(0)) expect_identical(dose[["df"]], numeric(0)) expect_identical(dose[["MSWD"]], numeric(0)) expect_identical(dose[["p_value"]], numeric(0)) expect_identical(dose[["range"]], numeric(0)) expect_s4_class(dose[["data"]], "data.frame") expect_identical(dose[["background"]], numeric(0)) expect_error(dose[["X"]]) }) test_that("Initialize an empty CalibrationCurve instance", { calib <- new("CalibrationCurve") expect_output(show(calib), "Calibration curve") expect_s4_class(calib[["Ni"]], "DoseRateModel") expect_s4_class(calib[["NiEi"]], "DoseRateModel") expect_type(calib[["details"]], "list") expect_error(calib[["X"]]) }) test_that("Initialize an empty PeakPosition instance", { peak <- new("PeakPosition") expect_output(show(peak), "No peaks were detected") expect_identical(peak[["hash"]],"xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx") expect_identical(peak[["noise_method"]], character(0)) expect_identical(peak[["noise_threshold"]], numeric(0)) expect_identical(peak[["window"]], integer(0)) expect_identical(peak[["channel"]], integer(0)) expect_identical(peak[["energy_observed"]], numeric(0)) expect_identical(peak[["energy_expected"]], numeric(0)) expect_error(peak[["X"]]) expect_error(.PeakPosition(noise_method = LETTERS), "must be a character vector of length 1, not 26") expect_error(.PeakPosition(noise_threshold = 1:26), "must be a numeric vector of length 1, not 26") expect_error(.PeakPosition(noise_threshold = -1), "must be a positive number") expect_error(.PeakPosition(window = 1:26), "must be an integer vector of length 1, not 26") expect_error(.PeakPosition(window = as.integer(-1)), "Slot `window` must be a strictly positive integer, not -1.") expect_error(.PeakPosition(energy_expected = 1:26), "Slots `channel` and `energy_expected` must have the same length.") expect_error(.PeakPosition(energy_observed = 1:26), "Slots `channel` and `energy_observed` must have the same length.") })