context("Test international atlases: Portugal") # set verbose to off galah_config(verbose = FALSE, run_checks = FALSE) test_that("swapping to atlas = Portugal works", { expect_message(galah_config(atlas = "Portugal")) }) test_that("show_all(fields) works for Portugal", { vcr::use_cassette("IA_Portugal_show_all_fields", { x <- show_all(fields) }) expect_gt(nrow(x), 1) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("show_all(collections) works for Portugal", { vcr::use_cassette("IA_Portugal_show_all_collections", { x <- show_all(collections, limit = 10) }) expect_lte(nrow(x), 10) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("show_all(datasets) works for Portugal", { vcr::use_cassette("IA_Portugal_show_all_datasets", { x <- show_all(datasets, limit = 10) }) expect_lte(nrow(x), 10) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("show_all(providers) works for Portugal", { vcr::use_cassette("IA_Portugal_show_all_providers", { x <- show_all(providers, limit = 10) }) expect_lte(nrow(x), 10) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("show_all(reasons) works for Portugal", { vcr::use_cassette("IA_Portugal_show_all_reasons", { x <- show_all(reasons) }) expect_gt(nrow(x), 1) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("show_all(assertions) works for Portugal", { vcr::use_cassette("IA_Portugal_show_all_assertions", { x <- show_all(assertions) }) expect_gt(nrow(x), 1) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("show_all(profiles) fails for Portugal", { expect_error(show_all(profiles)) }) test_that("show_all(lists) fails for Portugal", { expect_error(show_all(lists)) }) test_that("search_all(fields) works for Portugal", { x <- search_all(fields, "year") expect_gte(nrow(x), 1) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("search_all(taxa) works for Portugal", { vcr::use_cassette("IA_Portugal_search_all_taxa", { x <- search_all(taxa, "Mammalia") }) expect_gte(nrow(x), 1) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) test_that("show_values works for fields for Portugal", { vcr::use_cassette("IA_Portugal_show_values_fields", { x <- search_all(fields, "basis_of_record") |> show_values() }) expect_gte(nrow(x), 1) expect_true(inherits(x, c("tbl_df", "tbl", "data.frame"))) }) vcr::use_cassette("IA_Portugal_atlas_counts", { test_that("atlas_counts works for Portugal", { expect_gt(atlas_counts()$count, 0) expect_gt(atlas_counts(type = "species")$count, 0) }) }) vcr::use_cassette("IA_Portugal_atlas_counts_identify", { test_that("atlas_counts works with galah_identify for Portugal", { result <- galah_call() |> galah_identify("Mammalia") |> atlas_counts() expect_gt(result$count, 1) result2 <- galah_call() |> galah_filter(class == "Mammalia") |> atlas_counts() expect_lt( sqrt((result2$count - result$count)^2) / result$count, 0.1) # i.e. <1% margin of error }) }) vcr::use_cassette("IA_Portugal_atlas_counts_group_by", { test_that("atlas_counts works with group_by for Portugal", { result <- galah_call() |> galah_filter(year >= 2000) |> galah_group_by(basis_of_record) |> atlas_counts() expect_gt(nrow(result), 1) expect_equal(names(result), c("basis_of_record", "count")) }) }) test_that("atlas_occurrences returns error for Portugal", { expect_error(atlas_occurrences( filter = galah_filter(year == 2020) )) }) galah_config(atlas = "Australia")