library(unittest) library(gadget3) ok_group('edit.g3_r - Round-trip through an editor results in working code', { nll <- 0.0 model_fn <- g3_to_r(list(~{ nll <- g3_param('nll') return(nll) })) model_fn_n <- edit(model_fn, editor = '/bin/true') attr(model_fn, 'srcref') <- NULL attr(model_fn, 'srcfile') <- NULL attr(model_fn_n, 'srcref') <- NULL attr(model_fn_n, 'srcfile') <- NULL ok(ut_cmp_identical( capture.output(str(model_fn)), capture.output(str(model_fn_n))), "str() output of 2 functions is the same") n <- runif(1) ok(ut_cmp_identical(n, model_fn(list(nll = n))), "Original function works") ok(ut_cmp_identical(n, model_fn_n(list(nll = n))), "Edited function works too") }) ok_group('print.g3_r', { cap <- function (x) { out <- capture.output(x) out <- gsub('^<(\\w+): .*>$', '<\\1: xxx>', out) return(out) } model_fn <- g3_to_r(list( g3_formula( return(x + sum(y)), y = c(4, 5), x = g3_parameterized('parp') ))) ok(ut_cmp_identical(cap(print(model_fn)), c( "function (param = parameter_template) ", "{", " if (is.data.frame(param)) {", " param_lower <- structure(param$lower, names = param$switch)", " param_upper <- structure(param$upper, names = param$switch)", " param <- structure(param$value, names = param$switch)", " }", " else {", " param_lower <- lapply(param, function(x) NA)", " param_upper <- lapply(param, function(x) NA)", " }", " stopifnot(\"parp\" %in% names(param))", " x <- param[[\"parp\"]]", " while (TRUE) {", " return(x + sum(y))", " }", "}", "", "", NULL)), "Default print output has code, no attributes") ok(ut_cmp_identical(cap(print(model_fn, with_environment = TRUE, with_template = TRUE)), c( "function (param = parameter_template) ", "{", " if (is.data.frame(param)) {", " param_lower <- structure(param$lower, names = param$switch)", " param_upper <- structure(param$upper, names = param$switch)", " param <- structure(param$value, names = param$switch)", " }", " else {", " param_lower <- lapply(param, function(x) NA)", " param_upper <- lapply(param, function(x) NA)", " }", " stopifnot(\"parp\" %in% names(param))", " x <- param[[\"parp\"]]", " while (TRUE) {", " return(x + sum(y))", " }", "}", "", "", "Environment:", " $ y : num [1:2] 4 5", " $ reporting_enabled: int 1", "Parameter template:", " $ parp: num 0", NULL)), "Can add with_environment = TRUE, with_template = TRUE") }) ok_group("g3_to_r: attr.actions", { actions <- list( list("001" = ~{ 1 + 1 }, "002" = ~{2 + 2}), "003" = ~{3 + 3}) model_fn <- g3_to_r(actions) ok(ut_cmp_identical(attr(model_fn, 'actions'), actions), "actions returned as attribute uncollated") }) ok_group("g3_to_r: attr.parameter_template", { actions <- list( list("001" = ~{ 1 + 1 }, "002" = ~{2 + 2}), "003" = ~{3 + 3}) model_fn <- g3_to_r(actions) ok(ut_cmp_identical(attr(model_fn, 'parameter_template'), NULL), "Empty parameter template") actions <- list( "001" = ~{ 1 + 1 }, "002" = ~{g3_param('moo', value = 4) + g3_param('oink', value = 99)}, "003" = ~{3 + 3}) model_fn <- g3_to_r(actions) ok(ut_cmp_identical(attr(model_fn, 'parameter_template'), list(moo = 4, oink = 99)), "2 values populated") }) ok_group("g3_to_r: custom functions", local({ # Find an unclaimed name in globalenv to use fn_name <- NULL while (is.null(fn_name) || exists(fn_name, envir = globalenv())) { fn_name <- paste0("ut_run_r_fn_", floor(runif(1, 1e6, 1e7))) } # Set here and in globalenv, neither should appear in our tests assign(fn_name, function(x) 98) assign(fn_name, function(x) 99, envir = globalenv()) # Trying to call this without defining it explicitly doesn't work step_f <- gadget3:::call_to_formula( substitute( return(fn(123)), list( fn = as.symbol(fn_name) )), env = new.env(parent = emptyenv()) ) model_fn <- g3_to_r(list(step_f)) ok(!(fn_name %in% names(environment(model_fn))), "Function *not* in model environment") ok(ut_cmp_error( model_fn(), fn_name ), "Failed to run function without definition in formula, don't pick up globalenv") environment(step_f)[[fn_name]] <- function (x) x * 100 model_fn <- g3_to_r(list(step_f)) ok(fn_name %in% names(environment(model_fn)), "Function in model environment") ok(ut_cmp_equal(model_fn(), 12300), "Used definition of function from formula, not globalenv") # Can use closures within the model too closure <- function (base) { base <- base * 1e5 ; function(x) x + base } environment(step_f)[[fn_name]] <- closure(89) model_fn <- g3_to_r(list(step_f)) ok(fn_name %in% names(environment(model_fn)), "Function in model environment") ok(ut_cmp_equal(model_fn(), 8900123), "Used function, preserved it's closure") # Tidy up rm(list = fn_name, envir = globalenv()) })) ok_group("g3_to_r: non-base functions", local({ model_fn <- g3_to_r(list(g3_formula(quote( # NB: tail is part of utils::, not base:: return(tail(1:10, 5)) )))) ok(!any(grepl("tail", names(environment(model_fn)))), "tail not included in environment") ok(ut_cmp_equal(model_fn(), 6:10), "Can use non-base attached namespaces") })) ok_group("g3_to_r: namespace-referenced functions", local({ model_fn <- g3_to_r(list(g3_formula(quote({ # Explicitly reference dplyr::desc, which (probably) isn't attached. return(dplyr::desc(g3_param("v"))) })))) v_in <- runif(1, 1e5, 1e6) ok(!any(grepl("desc", names(environment(model_fn)))), "dplyr::desc not included in environment") ok(ut_cmp_equal( model_fn(list(v = v_in)), dplyr::desc(v_in) ), "Called dplyr::desc to generate output") })) ok_group('g3_param', { param <- attr(g3_to_r(list(g3a_time(2000, 2004, project_years = 0), ~{ g3_param('a') # NB: We don't actually use optimise, but shouldn't error if it's there g3_param('b', value = 4, optimise = FALSE) })), 'parameter_template') ok(ut_cmp_identical( param[c('a', 'b')], list(a = 0, b = 4)), "Param list included value values") # Definitions-as-code should still parse g3_param()s (it's a different path to formulas) model_fn <- g3_to_r(list(g3_formula( return(y), y = quote( 2 + g3_param("peep") )))) ok(ut_cmp_identical(model_fn(list(peep = 4)), 6), "Unevaluated code had g3_param() resolved") }) ok_group('g3_param_table', { param <- attr(g3_to_r(list(g3a_time(2000, 2004, step_lengths = rep(3, times = 4), project_years = 0), ~{ g3_param_table('pt', expand.grid( # NB: We can use base R cur_year = seq(start_year, end_year), # NB: We can use g3a_time's vars cur_step = 2:3)) g3_param_table('pg', expand.grid( cur_year = start_year, # NB: We don't actually use optimise, but shouldn't error if it's there cur_step = 1:2), value = 4, optimise = FALSE) })), 'parameter_template') ok(ut_cmp_identical( param[c(paste('pt', 2000:2004, 2, sep = '.'), paste('pt', 2000:2004, 3, sep = '.'), 'pg.2000.1', 'pg.2000.2')], structure( as.list(c(rep(0, 5), rep(0, 5), rep(4, 2))), names = c( paste('pt', 2000:2004, 2, sep = '.'), paste('pt', 2000:2004, 3, sep = '.'), 'pg.2000.1', 'pg.2000.2'))), "Param table turned into multiple parameters, value set") params.in <- attr(g3_to_r(list( g3a_time(1990, 2000), g3_formula( quote(d), d = g3_parameterized('par.years', value = 0, by_year = TRUE, exponentiate = TRUE), x = NA) )), 'parameter_template') ok(ut_cmp_identical(grep('^par', names(params.in), value = TRUE), c( paste0('par.years.', 1990:2000, '_exp'), NULL)), "exponentiate prefix ends up at the end of parameters") }) ok_group('parameter_template default', { # By default we read arguments from the parameter_template model_fn <- g3_to_r(~return(g3_param("archibald", value = 45))) ok(ut_cmp_equal(model_fn(), 45), "Used default from parameter_template") ok(ut_cmp_equal(model_fn(list(archibald = 99)), 99), "Override default") }) ok_group('parameter data.frame', { # We can also hand model_fn a data.frame, in which case the value column is used model_fn <- g3_to_r(~return(g3_param("archibald", value = 45))) df <- data.frame(switch = c("archibald"), lower = 0, upper = 100, value = I(list(floor(runif(1, 100, 200))))) ok(ut_cmp_equal(as.numeric(model_fn(df)), as.numeric(df$value)), "data.frame accepted as input") })