R Under development (unstable) (2025-04-18 r88159 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(unittest) > > library(gadget3) > > params <- list() > actions <- list() > > # NB: Should test under both CppAD and TMBAD > # options(gadget3.tmb.framework = "CppAD") > > ############################################################################### > > dif_pmax_scl_dbl_in <- runif(1, 0, 100) > dif_pmax_vec_in <- runif(10, 0, 100) > dif_pmax_vec_vec_max <- runif(10, 0, 10) * 10 > actions[['dif_pmax_vec']] <- g3_formula( + { + expect_dif_pmax_scl_dbl <- dif_pmax(dif_pmax_scl_dbl_in, 40.0, 1e5) + expect_dif_pmax_vec_typ <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_typ_max, 1e5) + expect_dif_pmax_dervec_typ <- dif_pmax(dif_pmax_vec_in * 2, dif_pmax_vec_typ_max, 1e5) + expect_dif_pmax_vec_dbl <- dif_pmax(dif_pmax_vec_in, 30.0, 1e5) + expect_dif_pmax_vec_int <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_int_max, 1e5) + expect_dif_pmax_vec_vec <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_vec_max, 1e5) + }, + dif_pmax_scl_dbl_in = dif_pmax_scl_dbl_in, + dif_pmax_vec_in = dif_pmax_vec_in, + dif_pmax_vec_typ_max = 40.0, + dif_pmax_vec_int_max = 60L, + dif_pmax_vec_vec_max = dif_pmax_vec_vec_max, + expect_dif_pmax_scl_dbl = pmax(dif_pmax_scl_dbl_in, 40), + expect_dif_pmax_vec_typ = pmax(dif_pmax_vec_in, 40.0), + expect_dif_pmax_dervec_typ = pmax(dif_pmax_vec_in * 2, 40.0), + expect_dif_pmax_vec_dbl = pmax(dif_pmax_vec_in, 30.0), + expect_dif_pmax_vec_int = pmax(dif_pmax_vec_in, 60L), + expect_dif_pmax_vec_vec = pmax(dif_pmax_vec_in, dif_pmax_vec_vec_max), + end = NULL ) > > dif_pmax_arr_in <- array(runif(10, 0, 9), dim = c(3, 3)) > dif_pmax_arr_vec_max <- runif(3, 0, 10) * 10 > actions[['dif_pmax_arr']] <- g3_formula( + { + expect_dif_pmax_arr_typ <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_typ_max, 1e5) + expect_dif_pmax_dearr_typ <- dif_pmax(dif_pmax_arr_in * 2, dif_pmax_arr_typ_max, 1e5) + expect_dif_pmax_arr_dbl <- dif_pmax(dif_pmax_arr_in, 30.0, 1e5) + expect_dif_pmax_arr_int <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_int_max, 1e5) + expect_dif_pmax_arr_vec <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_vec_max, 1e5) + }, + dif_pmax_arr_in = dif_pmax_arr_in, + dif_pmax_arr_typ_max = 40.0, + dif_pmax_arr_int_max = 60L, + dif_pmax_arr_vec_max = dif_pmax_arr_vec_max, + expect_dif_pmax_arr_typ = pmax(dif_pmax_arr_in, 40.0), + expect_dif_pmax_dearr_typ = pmax(dif_pmax_arr_in * 2, 40.0), + expect_dif_pmax_arr_dbl = pmax(dif_pmax_arr_in, 30.0), + expect_dif_pmax_arr_int = pmax(dif_pmax_arr_in, 60L), + expect_dif_pmax_arr_vec = pmax(dif_pmax_arr_in, dif_pmax_arr_vec_max), + end = NULL ) > > dif_pmin_vec_in <- runif(10, 0, 100) > dif_pmin_vec_vec_max <- runif(10, 0, 10) * 10 > actions[['dif_pmin_vec']] <- g3_formula( + { + expect_dif_pmin_vec_typ <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_typ_max, 1e5) + expect_dif_pmin_vec_dbl <- dif_pmin(dif_pmin_vec_in, 30.0, 1e5) + expect_dif_pmin_vec_int <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_int_max, 1e5) + expect_dif_pmin_vec_vec <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_vec_max, 1e5) + }, + dif_pmin_vec_in = dif_pmin_vec_in, + dif_pmin_vec_typ_max = 40.0, + dif_pmin_vec_int_max = 60L, + dif_pmin_vec_vec_max = dif_pmin_vec_vec_max, + expect_dif_pmin_vec_typ = pmin(dif_pmin_vec_in, 40.0), + expect_dif_pmin_vec_dbl = pmin(dif_pmin_vec_in, 30.0), + expect_dif_pmin_vec_int = pmin(dif_pmin_vec_in, 60L), + expect_dif_pmin_vec_vec = pmin(dif_pmin_vec_in, dif_pmin_vec_vec_max), + end = NULL ) > > dif_pmin_arr_in <- array(runif(10, 0, 9), dim = c(3, 3)) > dif_pmin_arr_vec_max <- runif(3, 0, 10) * 10 > actions[['dif_pmin_arr']] <- g3_formula( + { + expect_dif_pmin_arr_typ <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_typ_max, 1e5) + expect_dif_pmin_arr_dbl <- dif_pmin(dif_pmin_arr_in, 30.0, 1e5) + expect_dif_pmin_arr_int <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_int_max, 1e5) + expect_dif_pmin_arr_vec <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_vec_max, 1e5) + }, + dif_pmin_arr_in = dif_pmin_arr_in, + dif_pmin_arr_typ_max = 40.0, + dif_pmin_arr_int_max = 60L, + dif_pmin_arr_vec_max = dif_pmin_arr_vec_max, + expect_dif_pmin_arr_typ = pmin(dif_pmin_arr_in, 40.0), + expect_dif_pmin_arr_dbl = pmin(dif_pmin_arr_in, 30.0), + expect_dif_pmin_arr_int = pmin(dif_pmin_arr_in, 60L), + expect_dif_pmin_arr_vec = pmin(dif_pmin_arr_in, dif_pmin_arr_vec_max), + end = NULL ) > > dif_pminmax_vec_in <- runif(10, 0, 100) > dif_pminmax_vec_vec_l <- runif(10, 0, 50) > dif_pminmax_vec_vec_u <- 50 + runif(10, 0, 50) > actions[['dif_pminmax_vec']] <- g3_formula( + { + expect_dif_pminmax_vec_dbl <- dif_pminmax(dif_pminmax_vec_in, 30.0, 60.0, 1e5) + expect_dif_pminmax_vec_vec <- dif_pminmax(dif_pminmax_vec_in, dif_pminmax_vec_vec_l, dif_pminmax_vec_vec_u, 1e5) + }, + dif_pminmax_vec_in = dif_pminmax_vec_in, + dif_pminmax_vec_vec_l = dif_pminmax_vec_vec_l, + dif_pminmax_vec_vec_u = dif_pminmax_vec_vec_u, + expect_dif_pminmax_vec_dbl = pmin(pmax(dif_pminmax_vec_in, 30.0), 60.0), + expect_dif_pminmax_vec_vec = pmin(pmax(dif_pminmax_vec_in, dif_pminmax_vec_vec_l), dif_pminmax_vec_vec_u), + end = NULL ) > > ############################################################################### > > expecteds <- new.env(parent = emptyenv()) > > for (i in seq_along(actions)) { + exp_names <- grep("^expect_", names(environment(actions[[i]])), value = TRUE) + + # For each expect_ variable, move to expecteds + for (exp_name in exp_names) { + expecteds[[exp_name]] <- environment(actions[[i]])[[exp_name]] + environment(actions[[i]])[[exp_name]][] <- 0 + } + + # REPORT every expect_ + reports <- lapply(exp_names, function (exp_name) { + substitute(REPORT(sym), list(sym = as.symbol(exp_name))) + }) + # Convert list to { REPORT(x) ; REPORT(y); ... } + reports <- as.call(c(as.symbol("{"), reports)) + + # Top/tail actions with a comment of their name & reports + actions[[i]] <- gadget3:::f_substitute(quote({ + comment(act_name) + act_f + reports + }), list( + act_name = names(actions)[[i]], + act_f = actions[[i]], + reports = reports)) + } > > actions[['z']] <- g3_formula({ + comment('done') + nll <- nll + g3_param('rv') + return(nll) + }, nll = 0.0) > params$rv <- 0.0 > > model_fn <- g3_to_r(actions) > model_cpp <- g3_to_tmb(actions) > result <- model_fn(params) > > # Compare everything we've been told to compare > for (n in ls(expecteds)) { + tol <- sqrt(.Machine$double.eps) + if (!is.null(attr(expecteds[[n]], "tol"))) { + tol <- attr(expecteds[[n]], "tol") + attr(expecteds[[n]], "tol") <- NULL + } + ok(ut_cmp_equal( + attr(result, n), + expecteds[[n]], + tolerance = tol ), n) + } ok - expect_dif_pmax_arr_dbl ok - expect_dif_pmax_arr_int ok - expect_dif_pmax_arr_typ ok - expect_dif_pmax_arr_vec ok - expect_dif_pmax_dearr_typ ok - expect_dif_pmax_dervec_typ ok - expect_dif_pmax_scl_dbl ok - expect_dif_pmax_vec_dbl ok - expect_dif_pmax_vec_int ok - expect_dif_pmax_vec_typ ok - expect_dif_pmax_vec_vec ok - expect_dif_pmin_arr_dbl ok - expect_dif_pmin_arr_int ok - expect_dif_pmin_arr_typ ok - expect_dif_pmin_arr_vec ok - expect_dif_pmin_vec_dbl ok - expect_dif_pmin_vec_int ok - expect_dif_pmin_vec_typ ok - expect_dif_pmin_vec_vec ok - expect_dif_pminmax_vec_dbl ok - expect_dif_pminmax_vec_vec > > gadget3:::ut_tmb_r_compare2(model_fn, model_cpp, params) # skip: not running TMB tests NULL > > proc.time() user system elapsed 0.56 0.17 0.67 1..21 # Looks like you passed all 21 tests.