library(unittest) library(gadget3) params <- list() actions <- list() # NB: Should test under both CppAD and TMBAD # options(gadget3.tmb.framework = "CppAD") ############################################################################### dif_pmax_scl_dbl_in <- runif(1, 0, 100) dif_pmax_vec_in <- runif(10, 0, 100) dif_pmax_vec_vec_max <- runif(10, 0, 10) * 10 actions[['dif_pmax_vec']] <- g3_formula( { expect_dif_pmax_scl_dbl <- dif_pmax(dif_pmax_scl_dbl_in, 40.0, 1e5) expect_dif_pmax_vec_typ <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_typ_max, 1e5) expect_dif_pmax_dervec_typ <- dif_pmax(dif_pmax_vec_in * 2, dif_pmax_vec_typ_max, 1e5) expect_dif_pmax_vec_dbl <- dif_pmax(dif_pmax_vec_in, 30.0, 1e5) expect_dif_pmax_vec_int <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_int_max, 1e5) expect_dif_pmax_vec_vec <- dif_pmax(dif_pmax_vec_in, dif_pmax_vec_vec_max, 1e5) }, dif_pmax_scl_dbl_in = dif_pmax_scl_dbl_in, dif_pmax_vec_in = dif_pmax_vec_in, dif_pmax_vec_typ_max = 40.0, dif_pmax_vec_int_max = 60L, dif_pmax_vec_vec_max = dif_pmax_vec_vec_max, expect_dif_pmax_scl_dbl = pmax(dif_pmax_scl_dbl_in, 40), expect_dif_pmax_vec_typ = pmax(dif_pmax_vec_in, 40.0), expect_dif_pmax_dervec_typ = pmax(dif_pmax_vec_in * 2, 40.0), expect_dif_pmax_vec_dbl = pmax(dif_pmax_vec_in, 30.0), expect_dif_pmax_vec_int = pmax(dif_pmax_vec_in, 60L), expect_dif_pmax_vec_vec = pmax(dif_pmax_vec_in, dif_pmax_vec_vec_max), end = NULL ) dif_pmax_arr_in <- array(runif(10, 0, 9), dim = c(3, 3)) dif_pmax_arr_vec_max <- runif(3, 0, 10) * 10 actions[['dif_pmax_arr']] <- g3_formula( { expect_dif_pmax_arr_typ <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_typ_max, 1e5) expect_dif_pmax_dearr_typ <- dif_pmax(dif_pmax_arr_in * 2, dif_pmax_arr_typ_max, 1e5) expect_dif_pmax_arr_dbl <- dif_pmax(dif_pmax_arr_in, 30.0, 1e5) expect_dif_pmax_arr_int <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_int_max, 1e5) expect_dif_pmax_arr_vec <- dif_pmax(dif_pmax_arr_in, dif_pmax_arr_vec_max, 1e5) }, dif_pmax_arr_in = dif_pmax_arr_in, dif_pmax_arr_typ_max = 40.0, dif_pmax_arr_int_max = 60L, dif_pmax_arr_vec_max = dif_pmax_arr_vec_max, expect_dif_pmax_arr_typ = pmax(dif_pmax_arr_in, 40.0), expect_dif_pmax_dearr_typ = pmax(dif_pmax_arr_in * 2, 40.0), expect_dif_pmax_arr_dbl = pmax(dif_pmax_arr_in, 30.0), expect_dif_pmax_arr_int = pmax(dif_pmax_arr_in, 60L), expect_dif_pmax_arr_vec = pmax(dif_pmax_arr_in, dif_pmax_arr_vec_max), end = NULL ) dif_pmin_vec_in <- runif(10, 0, 100) dif_pmin_vec_vec_max <- runif(10, 0, 10) * 10 actions[['dif_pmin_vec']] <- g3_formula( { expect_dif_pmin_vec_typ <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_typ_max, 1e5) expect_dif_pmin_vec_dbl <- dif_pmin(dif_pmin_vec_in, 30.0, 1e5) expect_dif_pmin_vec_int <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_int_max, 1e5) expect_dif_pmin_vec_vec <- dif_pmin(dif_pmin_vec_in, dif_pmin_vec_vec_max, 1e5) }, dif_pmin_vec_in = dif_pmin_vec_in, dif_pmin_vec_typ_max = 40.0, dif_pmin_vec_int_max = 60L, dif_pmin_vec_vec_max = dif_pmin_vec_vec_max, expect_dif_pmin_vec_typ = pmin(dif_pmin_vec_in, 40.0), expect_dif_pmin_vec_dbl = pmin(dif_pmin_vec_in, 30.0), expect_dif_pmin_vec_int = pmin(dif_pmin_vec_in, 60L), expect_dif_pmin_vec_vec = pmin(dif_pmin_vec_in, dif_pmin_vec_vec_max), end = NULL ) dif_pmin_arr_in <- array(runif(10, 0, 9), dim = c(3, 3)) dif_pmin_arr_vec_max <- runif(3, 0, 10) * 10 actions[['dif_pmin_arr']] <- g3_formula( { expect_dif_pmin_arr_typ <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_typ_max, 1e5) expect_dif_pmin_arr_dbl <- dif_pmin(dif_pmin_arr_in, 30.0, 1e5) expect_dif_pmin_arr_int <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_int_max, 1e5) expect_dif_pmin_arr_vec <- dif_pmin(dif_pmin_arr_in, dif_pmin_arr_vec_max, 1e5) }, dif_pmin_arr_in = dif_pmin_arr_in, dif_pmin_arr_typ_max = 40.0, dif_pmin_arr_int_max = 60L, dif_pmin_arr_vec_max = dif_pmin_arr_vec_max, expect_dif_pmin_arr_typ = pmin(dif_pmin_arr_in, 40.0), expect_dif_pmin_arr_dbl = pmin(dif_pmin_arr_in, 30.0), expect_dif_pmin_arr_int = pmin(dif_pmin_arr_in, 60L), expect_dif_pmin_arr_vec = pmin(dif_pmin_arr_in, dif_pmin_arr_vec_max), end = NULL ) dif_pminmax_vec_in <- runif(10, 0, 100) dif_pminmax_vec_vec_l <- runif(10, 0, 50) dif_pminmax_vec_vec_u <- 50 + runif(10, 0, 50) actions[['dif_pminmax_vec']] <- g3_formula( { expect_dif_pminmax_vec_dbl <- dif_pminmax(dif_pminmax_vec_in, 30.0, 60.0, 1e5) expect_dif_pminmax_vec_vec <- dif_pminmax(dif_pminmax_vec_in, dif_pminmax_vec_vec_l, dif_pminmax_vec_vec_u, 1e5) }, dif_pminmax_vec_in = dif_pminmax_vec_in, dif_pminmax_vec_vec_l = dif_pminmax_vec_vec_l, dif_pminmax_vec_vec_u = dif_pminmax_vec_vec_u, expect_dif_pminmax_vec_dbl = pmin(pmax(dif_pminmax_vec_in, 30.0), 60.0), expect_dif_pminmax_vec_vec = pmin(pmax(dif_pminmax_vec_in, dif_pminmax_vec_vec_l), dif_pminmax_vec_vec_u), end = NULL ) ############################################################################### expecteds <- new.env(parent = emptyenv()) for (i in seq_along(actions)) { exp_names <- grep("^expect_", names(environment(actions[[i]])), value = TRUE) # For each expect_ variable, move to expecteds for (exp_name in exp_names) { expecteds[[exp_name]] <- environment(actions[[i]])[[exp_name]] environment(actions[[i]])[[exp_name]][] <- 0 } # REPORT every expect_ reports <- lapply(exp_names, function (exp_name) { substitute(REPORT(sym), list(sym = as.symbol(exp_name))) }) # Convert list to { REPORT(x) ; REPORT(y); ... } reports <- as.call(c(as.symbol("{"), reports)) # Top/tail actions with a comment of their name & reports actions[[i]] <- gadget3:::f_substitute(quote({ comment(act_name) act_f reports }), list( act_name = names(actions)[[i]], act_f = actions[[i]], reports = reports)) } actions[['z']] <- g3_formula({ comment('done') nll <- nll + g3_param('rv') return(nll) }, nll = 0.0) params$rv <- 0.0 model_fn <- g3_to_r(actions) model_cpp <- g3_to_tmb(actions) result <- model_fn(params) # Compare everything we've been told to compare for (n in ls(expecteds)) { tol <- sqrt(.Machine$double.eps) if (!is.null(attr(expecteds[[n]], "tol"))) { tol <- attr(expecteds[[n]], "tol") attr(expecteds[[n]], "tol") <- NULL } ok(ut_cmp_equal( attr(result, n), expecteds[[n]], tolerance = tol ), n) } gadget3:::ut_tmb_r_compare2(model_fn, model_cpp, params)