R Under development (unstable) (2024-07-02 r86866 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(magrittr)
> library(unittest)
> 
> library(gadget3)
> 
> areas <- list(a=1, b=2, c=3, d=4)
> # NB: stock doesn't live in b, shouldn't try to migrate there
> stock_acd <- (g3_stock('stock_acd', seq(10, 40, 10))
+     %>% g3s_age(3, 7)
+     %>% g3s_livesonareas(areas[c('a', 'c', 'd')]))
> 
> ok_group("g3a_migrate_normalize", {
+     mn <- function (migratematrix, area_idx, row_total = 1) {
+         g3_eval(g3a_migrate_normalize(row_total), list(
+             stock__migratematrix = migratematrix,
+             stock__area_idx = area_idx))
+     }
+ 
+     ok(ut_cmp_equal(
+         mn(array(c(sqrt(0.2), 0), dim = c(3,3)), 1),
+         c(0.8, 0, 0.2)), "Correct row selected, output balanced by adjusting stationary individuals")
+     ok(ut_cmp_equal(
+         mn(array(c(sqrt(0.2), 0), dim = c(3,3)), 2),
+         c(0, 1, 0)), "Attempts to set proportion of stationary individuals ignored")
+     ok(ut_cmp_equal(
+         mn(array(c(sqrt(0.2), 0, 0), dim = c(3,3)), 3),
+         c(0.2, 0, 0.8)), "Output balanced by adjusting stationary individuals")
+ 
+     ok(ut_cmp_equal(
+         mn(array(c(sqrt(0.2), 0), dim = c(3,3)), 1, row_total = 10),
+         c(0.98, 0, 0.02)), "Correct row selected, output balanced by adjusting stationary individuals")
+ })
# g3a_migrate_normalize
ok - Correct row selected, output balanced by adjusting stationary individuals
ok - Attempts to set proportion of stationary individuals ignored
ok - Output balanced by adjusting stationary individuals
ok - Correct row selected, output balanced by adjusting stationary individuals
> 
> ok_group("g3a_migrate", {
+     actions <- list(
+         g3a_time(start_year = 2000, end_year = 2004, step_lengths = c(3,3,3,3), project_years = 0),
+         g3a_initialconditions(stock_acd,
+             ~area * 100 + stock_acd__minlen,
+             ~area * 10 + stock_acd__minlen),
+         g3a_migrate(
+             stock_acd,
+             # 0.6324555 == sqrt(0.4)
+             ~if (area == area_d && dest_area == area_a) g3_param("migrate_spring", value = 0.6324555320336759) else 0,
+             run_f = ~cur_step == 2),
+         g3a_migrate(
+             stock_acd,
+             ~if (area == area_a && dest_area == area_c) g3_param("migrate_winter", value = 0.7745966692414834)
+               else if (area == area_c && dest_area == area_d) g3_param("migrate_winter", value = 0.7745966692414834)
+               else 0,
+             run_f = ~cur_step == 4),
+         g3a_report_stock(g3s_clone(stock_acd, 'report_acd') %>% gadget3:::g3s_modeltime(), stock_acd, ~stock_ss(input_stock__num)),
+         g3a_report_stock(g3s_clone(stock_acd, 'report_acd') %>% gadget3:::g3s_modeltime(), stock_acd, ~stock_ss(input_stock__wgt)),
+         list())
+ 
+     # Compile model
+     model_fn <- g3_to_r(actions)
+     # model_fn <- edit(model_fn)
+     if (nzchar(Sys.getenv('G3_TEST_TMB'))) {
+         model_cpp <- g3_to_tmb(actions, trace = FALSE)
+         # model_cpp <- edit(model_cpp)
+         model_tmb <- g3_tmb_adfun(model_cpp, compile_flags = c("-O0", "-g"))
+     } else {
+         writeLines("# skip: not compiling TMB model")
+     }
+ 
+     params <- attr(model_fn, 'parameter_template')
+     result <- model_fn(params)
+ 
+     # Make sure the model produces identical output in TMB and R
+     if (nzchar(Sys.getenv('G3_TEST_TMB'))) {
+         param_template <- attr(model_cpp, "parameter_template")
+         param_template$value <- params[param_template$switch]
+         gadget3:::ut_tmb_r_compare(model_fn, model_tmb, param_template)
+     }
+ 
+     for (a in paste0('age', 4:7)) {
+         ok(ut_cmp_equal(
+             attr(result, 'report_acd__num')[, age = 'age3',,],
+             attr(result, 'report_acd__num')[, age = a,,]), "Age ranges match, we're not selecting by age")
+     }
+ 
+     # Check one age/length pair to simplify matters
+     model_nums <- attr(result, 'report_acd__num')[length = '10:20', age = 'age3',,]
+     model_wgts <- attr(result, 'report_acd__wgt')[length = '10:20', age = 'age3',,]
+     expected_nums <- model_nums[,1]
+     expected_wgts <- model_wgts[,1]
+     ratio_add_vec <- function (orig_vec, orig_amount, new_vec, new_amount) (orig_vec * orig_amount + new_vec * new_amount)/(orig_amount + new_amount)
+     for (t in 1:((2004 - 2000) * 3)) {
+         if ((t-1) %% 4 == 1) {
+             # Spring migration, apply it ourselves
+             expected_wgts['a'] <- ratio_add_vec(
+                 expected_wgts['a'], expected_nums['a'],
+                 expected_wgts['d'], expected_nums['d'] * 0.4)
+             expected_nums['a'] <- expected_nums['a'] + expected_nums['d'] * 0.4
+             expected_nums['d'] <- expected_nums['d'] - expected_nums['d'] * 0.4
+         }
+         if ((t-1) %% 4 == 3) {
+             # Autumn migration, apply it ourselves
+             # NB: We shouldn't be migrating anything direct a -> d
+             # c -> d
+             expected_wgts['d'] <- ratio_add_vec(
+                 expected_wgts['d'], expected_nums['d'],
+                 expected_wgts['c'], expected_nums['c'] * 0.6)
+             expected_nums['d'] <- expected_nums['d'] + expected_nums['c'] * 0.6
+             expected_nums['c'] <- expected_nums['c'] - expected_nums['c'] * 0.6
+             # a -> c
+             expected_wgts['c'] <- ratio_add_vec(
+                 expected_wgts['c'], expected_nums['c'],
+                 expected_wgts['a'], expected_nums['a'] * 0.6)
+             expected_nums['c'] <- expected_nums['c'] + expected_nums['a'] * 0.6
+             expected_nums['a'] <- expected_nums['a'] - expected_nums['a'] * 0.6
+         }
+         ok(ut_cmp_equal(model_nums[,t], expected_nums), paste0("Model numbers matched expected, t = ", t))
+         ok(ut_cmp_equal(model_wgts[,t], expected_wgts), paste0("Model weights matched expected, t = ", t))
+     }
+ })
# g3a_migrate
# skip: not compiling TMB model
ok - Age ranges match, we're not selecting by age
ok - Age ranges match, we're not selecting by age
ok - Age ranges match, we're not selecting by age
ok - Age ranges match, we're not selecting by age
ok - Model numbers matched expected, t = 1
ok - Model weights matched expected, t = 1
ok - Model numbers matched expected, t = 2
ok - Model weights matched expected, t = 2
ok - Model numbers matched expected, t = 3
ok - Model weights matched expected, t = 3
ok - Model numbers matched expected, t = 4
ok - Model weights matched expected, t = 4
ok - Model numbers matched expected, t = 5
ok - Model weights matched expected, t = 5
ok - Model numbers matched expected, t = 6
ok - Model weights matched expected, t = 6
ok - Model numbers matched expected, t = 7
ok - Model weights matched expected, t = 7
ok - Model numbers matched expected, t = 8
ok - Model weights matched expected, t = 8
ok - Model numbers matched expected, t = 9
ok - Model weights matched expected, t = 9
ok - Model numbers matched expected, t = 10
ok - Model weights matched expected, t = 10
ok - Model numbers matched expected, t = 11
ok - Model weights matched expected, t = 11
ok - Model numbers matched expected, t = 12
ok - Model weights matched expected, t = 12
> 
> proc.time()
   user  system elapsed 
   0.81    0.07    0.89 
# Looks like you passed all 32 tests.