R Under development (unstable) (2024-03-18 r86148 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(magrittr) > library(unittest) > > library(gadget3) > > actions <- list() > expecteds <- new.env(parent = emptyenv()) > > # Do some tests directly first > do_lookup <- function(df, cur_vals) { + # Add a derived total_weight field, with values pasted together + df$total_weight <- do.call(paste, df) + lookup_f <- g3_timeareadata('l', df) + # Bodge g3_global first + environment(lookup_f)$l__lookup <- g3_eval(attr(environment(lookup_f)$l__lookup, 'g3_global_init_val')) + g3_eval(lookup_f, cur_vals) + } > > ok(ut_cmp_identical( + do_lookup(expand.grid(age=1:3, area=4), list(age=3, area=3)), + 0), "age/area: Outside area, no match") ok - age/area: Outside area, no match > ok(ut_cmp_identical( + do_lookup(expand.grid(age=1:3, area=4), list(age=3, area=4)), + "3 4"), "age/area: Inside area") ok - age/area: Inside area > ok(ut_cmp_identical( + do_lookup(expand.grid(age=1:3, year=2000:2004, step=1:2), list(age=3, cur_year=2000, cur_step=2)), + "3 2000 2"), "age/year/step matches") ok - age/year/step matches > > ############################################################################### > > area <- 1L > cur_step <- 1L > cur_year <- 1980L > > tad_lookup <- g3_timeareadata('tad', read.table(header = TRUE, text = " + year step area total_weight + 1983 1 1 198311 + 1983 2 1 198321 + 1984 1 1 198411 + 1984 2 1 198421 + 1983 1 2 198312 + 1983 2 2 198322 + 1984 1 2 198412 + 1984 2 2 198422 + ")) > > tad_lookup_1 <- 0 > tad_lookup_2 <- 0 > tad_lookup_3 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('tad_lookup') + cur_year <- 1983 ; cur_step <- 1 ; area <- 1 + tad_lookup_1 <- lookup_f + REPORT(tad_lookup_1) + + cur_year <- 1984 ; cur_step <- 2 ; area <- 1 + tad_lookup_2 <- lookup_f + REPORT(tad_lookup_2) + + # NB: 2008 not in table + cur_year <- 2008 ; cur_step <- 2 ; area <- 1 + tad_lookup_3 <- lookup_f + REPORT(tad_lookup_3) + + }, list(lookup_f = tad_lookup))) > expecteds$tad_lookup_1 <- 198311 > expecteds$tad_lookup_2 <- 198421 > expecteds$tad_lookup_3 <- 0 > > # Check a lookup with a single value in it still works > single_lookup <- gadget3:::g3_intlookup('single_lookup', c(1), c(100)) > single_lookup_rv_1 <- 0 > single_lookup_rv_2 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('single_lookup') + single_lookup_rv_1 <- lookup_rv_1_f + single_lookup_rv_2 <- lookup_rv_2_f + REPORT(single_lookup_rv_1) + REPORT(single_lookup_rv_2) + }, list( + lookup_rv_1_f = single_lookup('getdefault', ~1, 99), + lookup_rv_2_f = single_lookup('getdefault', ~2, 99)))) > expecteds$single_lookup_rv_1 <- 100 > expecteds$single_lookup_rv_2 <- 99 > > # Single-area form works as expected > single_area_lookup <- g3_timeareadata('single_area_lookup', read.table(header = TRUE, text = " + year step area total_weight + 1983 1 1 198311 + 1983 2 1 198321 + 1984 1 1 198411 + ")) > > single_area_1 <- 0 > single_area_2 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('single_area_lookup') + cur_year <- 1983 ; cur_step <- 1 ; area <- 1 + single_area_1 <- lookup_f + REPORT(single_area_1) + cur_year <- 1983 ; cur_step <- 1 ; area <- 2 + single_area_2 <- lookup_f + REPORT(single_area_2) + }, list(lookup_f = single_area_lookup))) > expecteds$single_area_1 <- 198311 > expecteds$single_area_2 <- 0 > > # Single-area lookup form works as expected > single_named_area_lookup <- g3_timeareadata('single_named_area_lookup', read.table(header = TRUE, text = " + year step area total_weight + 1983 1 b 198311 + 1983 2 b 198321 + 1984 1 b 198411 + "), areas = c(a=1,b=2,c=3)) > > single_named_area_1 <- 0 > single_named_area_2 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('single_named_area_lookup') + cur_year <- 1983 ; cur_step <- 1 ; area <- 1 + single_named_area_1 <- lookup_f + REPORT(single_named_area_1) + cur_year <- 1983 ; cur_step <- 2 ; area <- 2 + single_named_area_2 <- lookup_f + REPORT(single_named_area_2) + }, list(lookup_f = single_named_area_lookup))) > expecteds$single_named_area_1 <- 0 > expecteds$single_named_area_2 <- 198321 > > # no-area form works as expected > no_area_lookup <- g3_timeareadata('no_area_lookup', read.table(header = TRUE, text = " + year step total_weight + 1983 1 198311 + 1983 2 198321 + 1984 1 198411 + ")) > > no_area_1 <- 0 > no_area_2 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('no_area_lookup') + cur_year <- 1983 ; cur_step <- 1 ; area <- 1 + no_area_1 <- lookup_f + REPORT(no_area_1) + cur_year <- 1983 ; cur_step <- 2 ; area <- 2 + no_area_2 <- lookup_f + REPORT(no_area_2) + }, list(lookup_f = no_area_lookup))) > expecteds$no_area_1 <- 198311 > expecteds$no_area_2 <- 198321 > > # no-step > no_step_lookup <- g3_timeareadata('no_step_lookup', read.table(header = TRUE, text = " + year area total_weight + 1983 1 19831 + 1983 2 19832 + 1984 3 19843 + ")) > > no_step_1 <- 0 > no_step_2 <- 0 > no_step_3 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('no_step_lookup') + cur_year <- 1984 ; cur_step <- 1 ; area <- 3 + no_step_1 <- lookup_f + REPORT(no_step_1) + cur_year <- 1984 ; cur_step <- 2 ; area <- 3 + no_step_2 <- lookup_f + REPORT(no_step_2) + cur_year <- 1984 ; cur_step <- 3 ; area <- 2 + no_step_2 <- lookup_f + REPORT(no_step_3) + }, list(lookup_f = no_step_lookup))) > expecteds$no_step_1 <- 19843 > expecteds$no_step_2 <- 19843 > expecteds$no_step_3 <- 0 > > # "Simple" (i.e. mapping to a vector) lookups should return defaults > simple_vec_idx <- 0L > simple_vec_lookup <- gadget3:::g3_intlookup('simple_vec_lookup', c(1, 2, 3), c(2, 3, 4))('getdefault', ~simple_vec_idx, -1L) > simple_vec_1 <- 0 > simple_vec_2 <- 0 > simple_vec_3 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('simple_vec_lookup') + + simple_vec_idx <- -1L # NB: Out of bounds of what a vector can do in R + simple_vec_1 <- lookup_f + REPORT(simple_vec_1) + + simple_vec_idx <- 3L + simple_vec_2 <- lookup_f + REPORT(simple_vec_2) + + simple_vec_idx <- 4L + simple_vec_3 <- lookup_f + REPORT(simple_vec_3) + }, list(lookup_f = simple_vec_lookup))) > expecteds$simple_vec_1 <- -1 > expecteds$simple_vec_2 <- 4 > expecteds$simple_vec_3 <- -1 > > # Make sure we can have zero / negative values in a lookup > zero_key_idx <- 0L > zero_key_lookup <- gadget3:::g3_intlookup('zero_key_lookup', c(0, -1, 1), c(2, 3, 4))('getdefault', ~zero_key_idx, -1L) > zero_key_1 <- 0 > zero_key_2 <- 0 > zero_key_3 <- 0 > actions <- c(actions, gadget3:::f_substitute(~{ + comment('zero_key_lookup') + + zero_key_idx <- 0L + zero_key_1 <- lookup_f + REPORT(zero_key_1) + + zero_key_idx <- -1L + zero_key_2 <- lookup_f + REPORT(zero_key_2) + + zero_key_idx <- 2L + zero_key_3 <- lookup_f + REPORT(zero_key_3) + }, list(lookup_f = zero_key_lookup))) > expecteds$zero_key_1 <- 2 > expecteds$zero_key_2 <- 3 > expecteds$zero_key_3 <- -1 > > ############################################################################### > > nll <- 0.0 > actions <- c(actions, ~{ + comment('done') + nll <- nll + g3_param('rv') + return(nll) + }) > params <- list(rv=0) > > # Compile model > model_fn <- g3_to_r(actions, trace = FALSE) > model_cpp <- g3_to_tmb(actions, trace = FALSE) > # model_fn <- edit(model_fn) > if (nzchar(Sys.getenv('G3_TEST_TMB'))) { + # model_cpp <- edit(model_cpp) + model_tmb <- g3_tmb_adfun(model_cpp, params, compile_flags = c("-O0", "-g")) + } else { + writeLines("# skip: not compiling TMB model") + } # skip: not compiling TMB model > > # Compare everything we've been told to compare > result <- model_fn(params) > # str(attributes(result), vec.len = 10000) > for (n in ls(expecteds)) { + ok(ut_cmp_equal(attr(result, n), expecteds[[n]]), n) + } ok - no_area_1 ok - no_area_2 ok - no_step_1 ok - no_step_2 ok - no_step_3 ok - simple_vec_1 ok - simple_vec_2 ok - simple_vec_3 ok - single_area_1 ok - single_area_2 ok - single_lookup_rv_1 ok - single_lookup_rv_2 ok - single_named_area_1 ok - single_named_area_2 ok - tad_lookup_1 ok - tad_lookup_2 ok - tad_lookup_3 ok - zero_key_1 ok - zero_key_2 ok - zero_key_3 > param_template <- attr(model_cpp, "parameter_template") > param_template$value <- params[param_template$switch] > gadget3:::ut_tmb_r_compare(model_fn, model_tmb, param_template) # skip: not running TMB tests > > proc.time() user system elapsed 0.54 0.10 0.64 # Looks like you passed all 23 tests.