* installing *source* package ‘gRim’ ... ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.5 (2)’ using C++ compiler: ‘Debian clang version 18.1.5 (2)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./../inst/include/gRim.h:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/gRim.h:13: In file included from ./../inst/include/gRim_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/gRim.h:13: In file included from ./../inst/include/gRim_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/gRim.h:13: In file included from ./../inst/include/gRim_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/gRim.h:13: In file included from ./../inst/include/gRim_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/gRim.h:13: ./../inst/include/gRim_RcppExports.h:16:14: warning: unused function 'validateSignature' [-Wunused-function] 16 | void validateSignature(const char* sig) { | ^~~~~~~~~~~~~~~~~ 7 warnings generated. clang-18 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c _utils_mat.c -o _utils_mat.o clang-18 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c _utils_print.c -o _utils_print.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c fit2way.cpp -o fit2way.o In file included from fit2way.cpp:2: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from fit2way.cpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include/gRbase.h:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fit2way.cpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include/gRbase.h:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fit2way.cpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include/gRbase.h:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit2way.cpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include/gRbase.h:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang-18 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ggmfit.c -o ggmfit.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c grips_arma_utils.cpp -o grips_arma_utils.o In file included from grips_arma_utils.cpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c grips_fit_ips.cpp -o grips_fit_ips.o In file included from grips_fit_ips.cpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ grips_fit_ips.cpp:149:45: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 149 | conips_inner_(S, K, elst0, clist0, print=print); | ~~~~~^~~~~~ grips_fit_ips.cpp:213:16: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 213 | print=print); | ~~~~~^~~~~~ grips_fit_ips.cpp:254:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 254 | n_upd=n_upd, eps=eps, print=print); | ~~~~~^~~~~~ grips_fit_ips.cpp:254:21: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign] 254 | n_upd=n_upd, eps=eps, print=print); | ~~~^~~~ grips_fit_ips.cpp:254:32: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 254 | n_upd=n_upd, eps=eps, print=print); | ~~~~~^~~~~~ grips_fit_ips.cpp:266:21: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 266 | covips_inner0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~^~ grips_fit_ips.cpp:266:26: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 266 | covips_inner0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~^~ grips_fit_ips.cpp:266:35: warning: explicitly assigning value of variable of type 'List' (aka 'Vector<19>') to itself [-Wself-assign-overloaded] 266 | covips_inner0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~~~~~^~~~~~ grips_fit_ips.cpp:266:48: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 266 | covips_inner0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~~~~~^~~~~~ grips_fit_ips.cpp:267:13: warning: explicitly assigning value of variable of type 'List' (aka 'Vector<19>') to itself [-Wself-assign-overloaded] 267 | Scc_lst=Scc_lst, Scci_lst=Scci_lst, | ~~~~~~~^~~~~~~~ grips_fit_ips.cpp:267:31: warning: explicitly assigning value of variable of type 'List' (aka 'Vector<19>') to itself [-Wself-assign-overloaded] 267 | Scc_lst=Scc_lst, Scci_lst=Scci_lst, | ~~~~~~~~^~~~~~~~~ grips_fit_ips.cpp:268:11: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 268 | n_upd=n_upd, eps=eps, print=print); | ~~~~~^~~~~~ grips_fit_ips.cpp:268:22: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign] 268 | n_upd=n_upd, eps=eps, print=print); | ~~~^~~~ grips_fit_ips.cpp:268:33: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 268 | n_upd=n_upd, eps=eps, print=print); | ~~~~~^~~~~~ grips_fit_ips.cpp:319:26: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 319 | res1 = covips_outer0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~^~ grips_fit_ips.cpp:319:31: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 319 | res1 = covips_outer0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~^~ grips_fit_ips.cpp:319:40: warning: explicitly assigning value of variable of type 'List' (aka 'Vector<19>') to itself [-Wself-assign-overloaded] 319 | res1 = covips_outer0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~~~~~^~~~~~ grips_fit_ips.cpp:319:53: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 319 | res1 = covips_outer0_(S=S, K=K, elst0=elst0, Sigma=Sigma, | ~~~~~^~~~~~ grips_fit_ips.cpp:320:11: warning: explicitly assigning value of variable of type 'List' (aka 'Vector<19>') to itself [-Wself-assign-overloaded] 320 | Scc_lst=Scc_lst, Scci_lst=Scci_lst, | ~~~~~~~^~~~~~~~ grips_fit_ips.cpp:320:29: warning: explicitly assigning value of variable of type 'List' (aka 'Vector<19>') to itself [-Wself-assign-overloaded] 320 | Scc_lst=Scc_lst, Scci_lst=Scci_lst, | ~~~~~~~~^~~~~~~~~ grips_fit_ips.cpp:321:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 321 | nobs=nobs, emat_c=emat_c, n_upd=n_upd, | ~~~~^~~~~ grips_fit_ips.cpp:321:21: warning: explicitly assigning value of variable of type 'umat' (aka 'Mat') to itself [-Wself-assign-overloaded] 321 | nobs=nobs, emat_c=emat_c, n_upd=n_upd, | ~~~~~~^~~~~~~ grips_fit_ips.cpp:321:35: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 321 | nobs=nobs, emat_c=emat_c, n_upd=n_upd, | ~~~~~^~~~~~ grips_fit_ips.cpp:322:14: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign] 322 | max_visits=max_visits, n_visits=n_visits, | ~~~~~~~~~~^~~~~~~~~~~ grips_fit_ips.cpp:322:35: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign] 322 | max_visits=max_visits, n_visits=n_visits, | ~~~~~~~~^~~~~~~~~ grips_fit_ips.cpp:323:19: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 323 | eps=eps1, print=print); | ~~~~~^~~~~~ grips_fit_ips.cpp:295:16: warning: variable 'logLp' set but not used [-Wunused-but-set-variable] 295 | double logL, logLp, conv_check=9999, gap=-1.0, maxabs; | ^ 28 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c grips_fit_ncd.cpp -o grips_fit_ncd.o In file included from grips_fit_ncd.cpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ grips_fit_ncd.cpp:154:24: warning: explicitly assigning value of variable of type 'size_t' (aka 'unsigned long') to itself [-Wself-assign] 154 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~^~ grips_fit_ncd.cpp:154:33: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 154 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:154:45: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 154 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:154:56: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 154 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:154:68: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 154 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:170:35: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 170 | ncd_inner1_update_Sigma_(Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:170:47: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 170 | ncd_inner1_update_Sigma_(Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:170:58: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 170 | ncd_inner1_update_Sigma_(Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:170:70: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 170 | ncd_inner1_update_Sigma_(Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:200:23: warning: explicitly assigning value of variable of type 'size_t' (aka 'unsigned long') to itself [-Wself-assign] 200 | if (shall_update(u=u, K=K, amat=amat, eps=eps)){ | ~^~ grips_fit_ncd.cpp:200:28: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 200 | if (shall_update(u=u, K=K, amat=amat, eps=eps)){ | ~^~ grips_fit_ncd.cpp:200:36: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 200 | if (shall_update(u=u, K=K, amat=amat, eps=eps)){ | ~~~~^~~~~ grips_fit_ncd.cpp:200:46: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign] 200 | if (shall_update(u=u, K=K, amat=amat, eps=eps)){ | ~~~^~~~ grips_fit_ncd.cpp:202:26: warning: explicitly assigning value of variable of type 'size_t' (aka 'unsigned long') to itself [-Wself-assign] 202 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~^~ grips_fit_ncd.cpp:202:35: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 202 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:202:52: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 202 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:202:63: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 202 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:202:75: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 202 | update_Sigma_row_(u=u, Sigma=Sigma, amat=amat, nobs=nobs, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:203:26: warning: explicitly assigning value of variable of type 'size_t' (aka 'unsigned long') to itself [-Wself-assign] 203 | update_K_row_ (u=u, Sigma=Sigma, K=K, amat=amat, print=print); | ~^~ grips_fit_ncd.cpp:203:35: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 203 | update_K_row_ (u=u, Sigma=Sigma, K=K, amat=amat, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:203:44: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 203 | update_K_row_ (u=u, Sigma=Sigma, K=K, amat=amat, print=print); | ~^~ grips_fit_ncd.cpp:203:52: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 203 | update_K_row_ (u=u, Sigma=Sigma, K=K, amat=amat, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:203:64: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 203 | update_K_row_ (u=u, Sigma=Sigma, K=K, amat=amat, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:220:37: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 220 | ncd_inner2_update_Sigma_K_(Sigma=Sigma, K=K, amat=amat, nobs=nobs, | ~~~~~^~~~~~ grips_fit_ncd.cpp:220:46: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 220 | ncd_inner2_update_Sigma_K_(Sigma=Sigma, K=K, amat=amat, nobs=nobs, | ~^~ grips_fit_ncd.cpp:220:54: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 220 | ncd_inner2_update_Sigma_K_(Sigma=Sigma, K=K, amat=amat, nobs=nobs, | ~~~~^~~~~ grips_fit_ncd.cpp:220:65: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 220 | ncd_inner2_update_Sigma_K_(Sigma=Sigma, K=K, amat=amat, nobs=nobs, | ~~~~^~~~~ grips_fit_ncd.cpp:221:16: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 221 | n_upd=n_upd, eps=eps, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:221:27: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign] 221 | n_upd=n_upd, eps=eps, print=print); | ~~~^~~~ grips_fit_ncd.cpp:221:38: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 221 | n_upd=n_upd, eps=eps, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:271:29: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 271 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~~^~~~~~ grips_fit_ncd.cpp:271:38: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 271 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~^~ grips_fit_ncd.cpp:271:46: warning: explicitly assigning value of variable of type 'umat' (aka 'Mat') to itself [-Wself-assign-overloaded] 271 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~^~~~~ grips_fit_ncd.cpp:271:59: warning: explicitly assigning value of variable of type 'umat' (aka 'Mat') to itself [-Wself-assign-overloaded] 271 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~~~^~~~~~~ grips_fit_ncd.cpp:271:72: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 271 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~^~~~~ grips_fit_ncd.cpp:272:14: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 272 | nobs=nobs, eps=eps1, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:272:41: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 272 | nobs=nobs, eps=eps1, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~~~~~~~^~~~~~~~~~~ grips_fit_ncd.cpp:272:62: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 272 | nobs=nobs, eps=eps1, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~~~~~^~~~~~~~~ grips_fit_ncd.cpp:272:78: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 272 | nobs=nobs, eps=eps1, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:275:29: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 275 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~~^~~~~~ grips_fit_ncd.cpp:275:38: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 275 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~^~ grips_fit_ncd.cpp:275:46: warning: explicitly assigning value of variable of type 'umat' (aka 'Mat') to itself [-Wself-assign-overloaded] 275 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~^~~~~ grips_fit_ncd.cpp:275:59: warning: explicitly assigning value of variable of type 'umat' (aka 'Mat') to itself [-Wself-assign-overloaded] 275 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~~~^~~~~~~ grips_fit_ncd.cpp:275:72: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 275 | res1 = ncd_outer1_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, | ~~~~^~~~~ grips_fit_ncd.cpp:276:14: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 276 | nobs=nobs, eps=eps2, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~^~~~~ grips_fit_ncd.cpp:276:41: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 276 | nobs=nobs, eps=eps2, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~~~~~~~^~~~~~~~~~~ grips_fit_ncd.cpp:276:62: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 276 | nobs=nobs, eps=eps2, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~~~~~^~~~~~~~~ grips_fit_ncd.cpp:276:78: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 276 | nobs=nobs, eps=eps2, max_visits=max_visits, n_visits=n_visits, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:318:31: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 318 | res2 = ncd_outer2_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, nobs=nobs, eps=eps2, | ~~~~~^~~~~~ grips_fit_ncd.cpp:318:40: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 318 | res2 = ncd_outer2_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, nobs=nobs, eps=eps2, | ~^~ grips_fit_ncd.cpp:318:48: warning: explicitly assigning value of variable of type 'umat' (aka 'Mat') to itself [-Wself-assign-overloaded] 318 | res2 = ncd_outer2_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, nobs=nobs, eps=eps2, | ~~~~^~~~~ grips_fit_ncd.cpp:318:61: warning: explicitly assigning value of variable of type 'umat' (aka 'Mat') to itself [-Wself-assign-overloaded] 318 | res2 = ncd_outer2_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, nobs=nobs, eps=eps2, | ~~~~~~^~~~~~~ grips_fit_ncd.cpp:318:74: warning: explicitly assigning value of variable of type 'mat' (aka 'Mat') to itself [-Wself-assign-overloaded] 318 | res2 = ncd_outer2_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, nobs=nobs, eps=eps2, | ~~~~^~~~~ grips_fit_ncd.cpp:318:85: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 318 | res2 = ncd_outer2_(Sigma=Sigma, K=K, emat=emat, emat_c=emat_c, amat=amat, nobs=nobs, eps=eps2, | ~~~~^~~~~ grips_fit_ncd.cpp:319:15: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 319 | max_visits=max_visits, n_visits=n_visits, | ~~~~~~~~~~^~~~~~~~~~~ grips_fit_ncd.cpp:319:36: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 319 | max_visits=max_visits, n_visits=n_visits, | ~~~~~~~~^~~~~~~~~ grips_fit_ncd.cpp:320:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 320 | n_upd=n_upd, print=print); | ~~~~~^~~~~~ grips_fit_ncd.cpp:320:23: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] 320 | n_upd=n_upd, print=print); | ~~~~~^~~~~~ 59 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c grips_utils.cpp -o grips_utils.o In file included from grips_utils.cpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/gRbase/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c parm_conversion.cpp -o parm_conversion.o In file included from parm_conversion.cpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gRim.so RcppExports.o _utils_mat.o _utils_print.o fit2way.o ggmfit.o grips_arma_utils.o grips_fit_ips.o grips_fit_ncd.o grips_utils.o init.o parm_conversion.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN/gRim.Rcheck/00LOCK-gRim/00new/gRim/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gRim)