* using log directory 'd:/RCompile/CRANincoming/R-devel/fwtraits.Rcheck'
* using R Under development (unstable) (2025-10-28 r88973 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'fwtraits/DESCRIPTION' ... OK
* this is package 'fwtraits' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Anthony Basooma <anthony.basooma@boku.ac.at>'

New submission

Possibly misspelled words in DESCRIPTION:
  Freshwaterecology (13:60)

Found the following (possibly) invalid URLs:
  URL: https://codecov.io/gh/AnthonyBasooma/fwtraits (moved to https://app.codecov.io/gh/AnthonyBasooma/fwtraits)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/AnthonyBasooma/fwtraits/repo/releases
    From: README.md
    Status: 404
    Message: Not Found
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

The Title field should be in title case. Current version is:
  'Extract Species Ecological Parameters From www.freshwaterecology.info'
In title case that is:
  'Extract Species Ecological Parameters from Www.freshwaterecology.info'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'fwtraits' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    'fw_fdcompute.R' 'fw_fdendro.R' 'fw_geosites.R' 'fw_searchdata.R'
    'fw_token.R' 'fw_vizualize.R' 'utils.R'
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... ERROR
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > 
  > library(testthat)
  > library(fwtraits)
  > 
  > test_check("fwtraits")
    ============================================= 
    ============================================= 
   PLEASE FOLLOW THE INSTRUCTIONS CAREFULLY 
    ============================================= 
   1. PLEASE EDIT THE .Renviron THATS HAS OPENED 
   ==                                          
   2. TYPE IN: API_KEY = 36-digits alphanumeric 
   ==                                          
   3. SAVE AND CLOSE. RESTART RSESSION 
   ==                                          
   4. CONGS: YOUR ARE READY TO GO!!!!!!!! 
   ============================================ 
   ============================================ 
  [ FAIL 3 | WARN 0 | SKIP 14 | PASS 17 ]
  
  ══ Skipped tests (14) ══════════════════════════════════════════════════════════
  • On CRAN (14): 'test-fw_visualize.R:5:13', 'test-fwfetchdata.R:8:13',
    'test-fwfetchdata.R:21:13', 'test-fwfetchdata.R:30:13',
    'test-fwfetchdata.R:57:13', 'test-fwfetchdata.R:81:13',
    'test-fwfetchdata.R:97:13', 'test-fwfetchdata.R:119:13',
    'test-fwfetchdata.R:138:13', 'test_fwdbguide.R:3:3',
    'test_fwfdcompute.R:22:13', 'test_fwregister.R:5:13', 'test_fwtoken.R:3:13',
    'test_loaddb.R:4:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-fw_visualize.R:24:1'): (code run outside of `test_that()`) ─────
  Error: The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
  Backtrace:
      ▆
   1. └─fwtraits::fw_fetchdata(...) at test-fw_visualize.R:24:1
   2.   └─fwtraits::fw_searchdata(...)
   3.     └─fwtraits::fw_token(...)
   4.       └─fwtraits::fw_keyload()
  ── Error ('test_fwsearch.R:9:13'): tchecks ─────────────────────────────────────
  Error: The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test_fwsearch.R:9:13
   2. │ └─testthat:::expect_condition_matching(...)
   3. │   └─testthat:::quasi_capture(...)
   4. │     ├─testthat (local) .capture(...)
   5. │     │ └─base::withCallingHandlers(...)
   6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   7. └─fwtraits::fw_searchdata(...)
   8.   └─fwtraits::fw_token(...)
   9.     └─fwtraits::fw_keyload()
  ── Error ('test_fwsetapikey.R:22:12'): The key is properly set ─────────────────
  Error: The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(nchar(fw_keyload()), 36) at test_fwsetapikey.R:22:12
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. ├─base::nchar(fw_keyload())
   5. └─fwtraits::fw_keyload()
  
  [ FAIL 3 | WARN 0 | SKIP 14 | PASS 17 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'Secure_API_key.Rmd' using rmarkdown

Quitting from Secure_API_key.Rmd:40-53 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
---
Backtrace:
    ▆
 1. └─fwtraits::fw_fetchdata(...)
 2.   └─fwtraits::fw_searchdata(...)
 3.     └─fwtraits::fw_token(...)
 4.       └─fwtraits::fw_keyload()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Secure_API_key.Rmd' failed with diagnostics:
The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
--- failed re-building 'Secure_API_key.Rmd'

--- re-building 'data_for_taxa_groups.Rmd' using rmarkdown

Quitting from data_for_taxa_groups.Rmd:86-93 [Retrieve fish species data for one species]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
---
Backtrace:
    ▆
 1. └─fwtraits::fw_fetchdata(...)
 2.   └─fwtraits::fw_searchdata(...)
 3.     └─fwtraits::fw_token(...)
 4.       └─fwtraits::fw_keyload()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'data_for_taxa_groups.Rmd' failed with diagnostics:
The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
--- failed re-building 'data_for_taxa_groups.Rmd'

--- re-building 'fishcompute.Rmd' using rmarkdown

Quitting from fishcompute.Rmd:49-56 [retrievedata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
---
Backtrace:
    ▆
 1. └─fwtraits::fw_fetchdata(...)
 2.   └─fwtraits::fw_searchdata(...)
 3.     └─fwtraits::fw_token(...)
 4.       └─fwtraits::fw_keyload()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fishcompute.Rmd' failed with diagnostics:
The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
--- failed re-building 'fishcompute.Rmd'

--- re-building 'functiondendo.Rmd' using rmarkdown

Quitting from functiondendo.Rmd:43-51 [dataretrieval]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
---
Backtrace:
    ▆
 1. └─fwtraits::fw_fetchdata(...)
 2.   └─fwtraits::fw_searchdata(...)
 3.     └─fwtraits::fw_token(...)
 4.       └─fwtraits::fw_keyload()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'functiondendo.Rmd' failed with diagnostics:
The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
--- failed re-building 'functiondendo.Rmd'

--- re-building 'macroinverts.Rmd' using rmarkdown

Quitting from macroinverts.Rmd:55-61 [retrievedata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
---
Backtrace:
    ▆
 1. └─fwtraits::fw_fetchdata(...)
 2.   └─fwtraits::fw_searchdata(...)
 3.     └─fwtraits::fw_token(...)
 4.       └─fwtraits::fw_keyload()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'macroinverts.Rmd' failed with diagnostics:
The API key has not been well set in the .Renviron file. Run fw_setapikey() and follow the instruction carefully.
--- failed re-building 'macroinverts.Rmd'

SUMMARY: processing the following files failed:
  'Secure_API_key.Rmd' 'data_for_taxa_groups.Rmd' 'fishcompute.Rmd'
  'functiondendo.Rmd' 'macroinverts.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 2 NOTEs