R Under development (unstable) (2023-06-30 r84625 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > source("incl/start.R") [18:01:03.187] plan(): Setting new future strategy stack: [18:01:03.189] List of future strategies: [18:01:03.189] 1. sequential: [18:01:03.189] - args: function (..., envir = parent.frame()) [18:01:03.189] - tweaked: FALSE [18:01:03.189] - call: future::plan("sequential") [18:01:03.204] plan(): nbrOfWorkers() = 1 > library("listenv") > options(future.debug = FALSE) > > ## IMPORTANT: Since we're killing parallel workers, some of them will not > ## get a chance to clean up their R temporary folders. Here we configuring > ## them to use temporary folders with this R process temporary folder. > ## This way they'll be removed when this R process terminates > Sys.setenv(TMPDIR = tempdir()) > > message("*** cluster() - terminating worker ...") *** cluster() - terminating worker ... > > message("Library paths: ", paste(sQuote(.libPaths()), collapse = ", ")) Library paths: 'D:/temp/Rtmp67Lu9b/RLIBS_19fe819742e2c', 'D:/RCompile/recent/R/library' > message("Package path: ", sQuote(system.file(package = "future"))) Package path: 'D:/RCompile/CRANincoming/R-devel/lib/future' > message("TMPDIR for parallel workers: ", sQuote(Sys.getenv("TMPDIR"))) TMPDIR for parallel workers: 'D:\temp\RtmpWMUwXT' > > types <- "PSOCK" > > ## Speed up CRAN checks: Skip on CRAN Windows 32-bit > if (isWin32) types <- NULL > > if (supportsMulticore()) types <- c(types, "FORK") > > pid <- Sys.getpid() > message("Main PID (original): ", pid) Main PID (original): 112924 > cl <- NULL > for (type in types) { + message(sprintf("Cluster type %s ...", sQuote(type))) + + cl <- parallel::makeCluster(1L, type = type, timeout = 60) + print(cl) + + ## Crashing FORK:ed processes seems too harsh on R (< 3.3.0) + if (type != "FORK" || getRversion() >= "3.3.0") { + message("*** cluster() - crashed worker ...") + + plan(cluster, workers = cl, .skip = FALSE) + x %<-% 42L + stopifnot(x == 42L) + + ## Force R worker to terminate + ## It's not safe to use quit() here when using type = "FORK" [1] + ## [1] https://stat.ethz.ch/pipermail/r-devel/2021-August/080995.html + x %<-% tools::pskill(pid = Sys.getpid()) + res <- tryCatch(y <- x, error = identity) + print(res) + stopifnot( + inherits(res, "error"), + inherits(res, "FutureError") + ) + + ## Cleanup + print(cl) + ## FIXME: Why doesn't this work here? It causes the below future to stall. + # parallel::stopCluster(cl) + + ## Verify that the reset worked + cl <- parallel::makeCluster(1L, type = type, timeout = 60) + print(cl) + plan(cluster, workers = cl, .skip = FALSE) + x %<-% 43L + stopifnot(x == 43L) + + message("*** cluster() - crashed worker ... DONE") + } ## if (type != "FORK" || getRversion() >= "3.3.0") + + ## Sanity checks + pid2 <- Sys.getpid() + message("Main PID (original): ", pid) + message("Main PID: ", pid2) + stopifnot(pid2 == pid) + + ## Cleanup + print(cl) + str(cl) + parallel::stopCluster(cl) + + ## Sanity checks + pid2 <- Sys.getpid() + message("Main PID (original): ", pid) + message("Main PID: ", pid2) + stopifnot(pid2 == pid) + + message(sprintf("Cluster type %s ... DONE", sQuote(type))) + } ## for (type ...) Cluster type 'PSOCK' ... socket cluster with 1 nodes on host 'localhost' *** cluster() - crashed worker ... ) failed to receive message results from cluster SOCKnode #1 (on 'localhost'). The reason reported was 'error reading from connection'> Future UUID: 3664e93f-3b23-2a9d-ca58-d013526bb6f3 DEBUG: BEGIN TROUBLESHOOTING HELP Future involved: ClusterFuture: Label: '' Expression: tools::pskill(pid = Sys.getpid()) Lazy evaluation: FALSE Asynchronous evaluation: TRUE Local evaluation: TRUE Environment: R_GlobalEnv Capture standard output: TRUE Capture condition classes: 'condition' (excluding 'nothing') Globals: Packages: L'Ecuyer-CMRG RNG seed: (seed = FALSE) Resolved: TRUE Value: Conditions captured: Early signaling: FALSE Owner process: e125b727-0f5f-ffbb-8c9d-a0c25913cb75 Class: 'ClusterFuture', 'MultiprocessFuture', 'Future', 'environment' DEBUG: END TROUBLESHOOTING HELP socket cluster with 1 nodes on host 'localhost' socket cluster with 1 nodes on host 'localhost' *** cluster() - crashed worker ... DONE Main PID (original): 112924 Main PID: 112924 socket cluster with 1 nodes on host 'localhost' List of 1 $ :List of 3 ..$ con : 'sockconn' int 5 .. ..- attr(*, "conn_id")= ..$ host: chr "localhost" ..$ rank: num 0 ..- attr(*, "class")= chr "SOCKnode" - attr(*, "class")= chr [1:2] "SOCKcluster" "cluster" Main PID (original): 112924 Main PID: 112924 Cluster type 'PSOCK' ... DONE > > message("*** cluster() - terminating worker ... DONE") *** cluster() - terminating worker ... DONE > > ## Sanity checks > pid2 <- Sys.getpid() > message("Main PID (original): ", pid) Main PID (original): 112924 > message("Main PID: ", pid2) Main PID: 112924 > stopifnot(pid2 == pid) > > source("incl/end.R") Failed to undo environment variables: - Expected environment variables: [n=201] '!ExitCode', 'ALLUSERSPROFILE', 'APPDATA', 'BIBINPUTS', 'BINDIR', 'BSTINPUTS', 'COMMONPROGRAMFILES', 'COMPUTERNAME', 'COMSPEC', 'CURL_CA_BUNDLE', 'CYGWIN', 'CommonProgramFiles(x86)', 'CommonProgramW6432', 'DriverData', 'HOME', 'HOMEDRIVE', 'HOMEPATH', 'JAGS_ROOT', 'JAVA_HOME', 'LANGUAGE', 'LC_COLLATE', 'LC_MONETARY', 'LC_TIME', 'LOCALAPPDATA', 'LOGONSERVER', 'LS_HOME', 'LS_LICENSE_PATH', 'MAKE', 'MAKEFLAGS', 'MAKELEVEL', 'MFLAGS', 'MSMPI_BENCHMARKS', 'MSMPI_BIN', 'MSYS2_ENV_CONV_EXCL', 'NUMBER_OF_PROCESSORS', 'OMP_THREAD_LIMIT', 'OS', 'PATH', 'PATHEXT', 'PROCESSOR_ARCHITECTURE', 'PROCESSOR_IDENTIFIER', 'PROCESSOR_LEVEL', 'PROCESSOR_REVISION', 'PROGRAMFILES', 'PROMPT', 'PSModulePath', 'PUBLIC', 'PWD', 'ProgramData', 'ProgramFiles(x86)', 'ProgramW6432', 'RETICULATE_AUTOCONFIGURE', 'RTOOLS43_HOME', 'R_ARCH', 'R_BROWSER', 'R_BZIPCMD', 'R_CMD', 'R_COMPILED_BY', 'R_CRAN_WEB', 'R_CUSTOM_TOOLS_PATH', 'R_CUSTOM_TOOLS_SOFT', 'R_DOC_DIR', 'R_ENVIRON_USER', 'R_GSCMD', 'R_GZIPCMD', 'R_HOME', 'R_INCLUDE_DIR', 'R_INSTALL_TAR', 'R_LIBS', 'R_LIBS_SITE', 'R_LIBS_USER', 'R_MAX_NUM_DLLS', 'R_OSTYPE', 'R_PAPERSIZE', 'R_PAPERSIZE_USER', 'R_PARALLELLY_MAKENODEPSOCK_AUTOKILL', 'R_PARALLELLY_MAKENODEPSOCK_CONNECTTIMEOUT', 'R_PARALLELLY_MAKENODEPSOCK_RSCRIPT_LABEL', 'R_PARALLELLY_MAKENODEPSOCK_SESSIONINFO_PKGS', 'R_PARALLELLY_MAKENODEPSOCK_TIMEOUT', 'R_PARALLELLY_RANDOM_PORTS', 'R_PARALLEL_PORT', 'R_RD4PDF', 'R_RTOOLS43_PATH', 'R_SCRIPT_LEGACY', 'R_SHARE_DIR', 'R_TESTS', 'R_UNZIPCMD', 'R_USER', 'R_VERSION', 'R_ZIPCMD', 'SED', 'SHLVL', 'SYSTEMDRIVE', 'SYSTEMROOT', 'TAR', 'TAR_OPTIONS', 'TEMP', 'TERM', 'TEXINPUTS', 'TMP', 'TMPDIR', 'USERDOMAIN', 'USERDOMAIN_ROAMINGPROFILE', 'USERNAME', 'USERPROFILE', 'WINDIR', '_', '_R_CHECK_AUTOCONF_', '_R_CHECK_BOGUS_RETURN_', '_R_CHECK_BROWSER_NONINTERACTIVE_', '_R_CHECK_BUILD_VIGNETTES_SEPARATELY_', '_R_CHECK_CODETOOLS_PROFILE_', '_R_CHECK_CODE_ASSIGN_TO_GLOBALENV_', '_R_CHECK_CODE_ATTACH_', '_R_CHECK_CODE_CLASS_IS_STRING_', '_R_CHECK_CODE_DATA_INTO_GLOBALENV_', '_R_CHECK_CODE_USAGE_VIA_NAMESPACES_', '_R_CHECK_CODE_USAGE_WITHOUT_LOADING_', '_R_CHECK_CODE_USAGE_WITH_ONLY_BASE_ATTACHED_', '_R_CHECK_CODOC_VARIABLES_IN_USAGES_', '_R_CHECK_COMPACT_DATA2_', '_R_CHECK_COMPILATION_FLAGS_', '_R_CHECK_CONNECTIONS_LEFT_OPEN_', '_R_CHECK_CRAN_INCOMING_', '_R_CHECK_CRAN_INCOMING_CHECK_FILE_URIS_', '_R_CHECK_CRAN_INCOMING_CHECK_URLS_IN_PARALLEL_', '_R_CHECK_CRAN_INCOMING_NOTE_GNU_MAKE_', '_R_CHECK_CRAN_INCOMING_REMOTE_', '_R_CHECK_CRAN_INCOMING_USE_ASPELL_', '_R_CHECK_DATALIST_', '_R_CHECK_DEPRECATED_DEFUNCT_', '_R_CHECK_DOC_SIZES2_', '_R_CHECK_DOT_FIRSTLIB_', '_R_CHECK_DOT_INTERNAL_', '_R_CHECK_EXAMPLE_TIMING_THRESHOLD_', '_R_CHECK_EXECUTABLES_', '_R_CHECK_EXECUTABLES_EXCLUSIONS_', '_R_CHECK_FF_CALLS_', '_R_CHECK_FF_DUP_', '_R_CHECK_FORCE_SUGGESTS_', '_R_CHECK_FUTURE_FILE_TIMESTAMPS_', '_R_CHECK_FUTURE_FILE_TIMESTAMPS_LEEWAY_', '_R_CHECK_HAVE_MYSQL_', '_R_CHECK_HAVE_ODBC_', '_R_CHECK_HAVE_PERL_', '_R_CHECK_HAVE_POSTGRES_', '_R_CHECK_INSTALL_DEPENDS_', '_R_CHECK_INTERNALS2_', '_R_CHECK_LENGTH_1_CONDITION_', '_R_CHECK_LICENSE_', '_R_CHECK_LIMIT_CORES_', '_R_CHECK_MATRIX_DATA_', '_R_CHECK_NATIVE_ROUTINE_REGISTRATION_', '_R_CHECK_NEWS_IN_PLAIN_TEXT_', '_R_CHECK_NO_RECOMMENDED_', '_R_CHECK_NO_STOP_ON_TEST_ERROR_', '_R_CHECK_ORPHANED_', '_R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_', '_R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_', '_R_CHECK_PACKAGES_USED_IN_TESTS_USE_SUBDIRS_', '_R_CHECK_PACKAGE_DATASETS_SUPPRESS_NOTES_', '_R_CHECK_PACKAGE_NAME_', '_R_CHECK_PKG_SIZES_', '_R_CHECK_PKG_SIZES_THRESHOLD_', '_R_CHECK_PRAGMAS_', '_R_CHECK_RD_EXAMPLES_T_AND_F_', '_R_CHECK_RD_LINE_WIDTHS_', '_R_CHECK_RD_MATH_RENDERING_', '_R_CHECK_RD_VALIDATE_RD2HTML_', '_R_CHECK_REPLACING_IMPORTS_', '_R_CHECK_R_DEPENDS_', '_R_CHECK_S3_METHODS_SHOW_POSSIBLE_ISSUES_', '_R_CHECK_SCREEN_DEVICE_', '_R_CHECK_SERIALIZATION_', '_R_CHECK_SHLIB_OPENMP_FLAGS_', '_R_CHECK_SRC_MINUS_W_IMPLICIT_', '_R_CHECK_SUBDIRS_NOCASE_', '_R_CHECK_SUBDIRS_STRICT_', '_R_CHECK_SUGGESTS_ONLY_', '_R_CHECK_SYSTEM_CLOCK_', '_R_CHECK_TESTS_NLINES_', '_R_CHECK_TEST_TIMING_', '_R_CHECK_TIMINGS_', '_R_CHECK_TOPLEVEL_FILES_', '_R_CHECK_UNDOC_USE_ALL_NAMES_', '_R_CHECK_UNSAFE_CALLS_', '_R_CHECK_URLS_SHOW_301_STATUS_', '_R_CHECK_VC_DIRS_', '_R_CHECK_VIGNETTES_NLINES_', '_R_CHECK_VIGNETTES_SKIP_RUN_MAYBE_', '_R_CHECK_VIGNETTE_TIMING_', '_R_CHECK_VIGNETTE_TITLES_', '_R_CHECK_WINDOWS_DEVICE_', '_R_CHECK_XREFS_USE_ALIASES_FROM_CRAN_', '_R_CLASS_MATRIX_ARRAY_', '_R_INSTALL_TIME_PATCHES_', '_R_S3_METHOD_LOOKUP_BASEENV_AFTER_GLOBALENV_', '_R_SHLIB_BUILD_OBJECTS_SYMBOL_TABLES_', 'maj.version', 'nextArg--timingsnextArg--install' - Environment variables still there: [n=0] - Environment variables missing: [n=1] 'MAKEFLAGS' Differences environment variable by environment variable: List of 3 $ name : chr "MAKEFLAGS" $ expected: 'Dlist' chr "" $ actual : 'Dlist' chr NA > > proc.time() user system elapsed 0.39 0.07 1.06