* using log directory ‘/srv/hornik/tmp/CRAN_pretest/fusedMGM.Rcheck’ * using R Under development (unstable) (2024-10-16 r87241) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘fusedMGM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fusedMGM’ version ‘0.1.2’ * checking CRAN incoming feasibility ... [4s/5s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘fusedMGM’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [204s/125s] ERROR Running examples in ‘fusedMGM-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: FMGM_plot > ### Title: A plot function for a list of MGMs. The output is usually from > ### FMGM main function. > ### Aliases: FMGM_plot > > ### ** Examples > > if (Sys.info()['sysname'] == 'Windows') { + cores=1 + } else { + cores=parallel::detectCores() ; + } > > ## Not run: > ##D data(data_all) ; # Example 500-by-100 simulation data > ##D data(ind_disc) ; > ##D > ##D group <- rep(c(1,2), each=250) ; > ##D names(group) <- seq(500) ; > ##D > ##D res_FMGM <- FMGM_mc(data_all, ind_disc, group, > ##D lambda_intra=c(0.2,0.15,0.1), lambda_inter=c(0.2,0.15,0.1), > ##D cores=cores, verbose=TRUE) > ##D > ##D FMGM_plot(res_FMGM) > ## End(Not run) > > data(data_mini) ; # Minimal example 500-by-10 simulation data > data(ind_disc_mini) ; > > group <- rep(c(1,2), each=250) ; > names(group) <- rownames(data_mini) ; > > res_FMGM_mini <- FMGM_mc(data_mini, ind_disc_mini, group, + lambda_intra=c(0.2,0.15,0.1), lambda_inter=c(0.2,0.15,0.1), + cores=cores, verbose=TRUE) [1] "Backtracking started" [1] " Calculating the gradients & moving the parameters" Error in .check_ncores(cores) : 32 simultaneous processes spawned Calls: FMGM_mc -> learn_tb -> f_fun -> mclapply -> .check_ncores Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed FMGM_mc 166.881 36.044 124.168 * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR