* installing *source* package 'funMoDisco' ...
** this is package 'funMoDisco' version '1.2.0'
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
using C++20
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c DissimilarityH1.cpp -o DissimilarityH1.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/TypeTraits.hpp:3,
                 from ./include/Dissimilarity.hpp:3,
                 from DissimilarityH1.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c DissimilarityL2.cpp -o DissimilarityL2.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/TypeTraits.hpp:3,
                 from ./include/Dissimilarity.hpp:3,
                 from DissimilarityL2.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c MotifH1.cpp -o MotifH1.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/Motif.hpp:3,
                 from MotifH1.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c MotifL2.cpp -o MotifL2.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/Motif.hpp:3,
                 from MotifL2.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c MotifSobol.cpp -o MotifSobol.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/Motif.hpp:3,
                 from MotifSobol.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c Parameters.cpp -o Parameters.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/Parameters.hpp:4,
                 from Parameters.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c PerformanceH1.cpp -o PerformanceH1.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/PerformanceIndex.hpp:3,
                 from PerformanceH1.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c PerformanceL2.cpp -o PerformanceL2.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/PerformanceIndex.hpp:3,
                 from PerformanceL2.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from RcppExports.cpp:4:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c SobolDiss.cpp -o SobolDiss.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/TypeTraits.hpp:3,
                 from ./include/Dissimilarity.hpp:3,
                 from SobolDiss.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
SobolDiss.cpp: In member function 'virtual double SobolDiss::distance(const KMA::matrix&, const KMA::matrix&) const':
SobolDiss.cpp:16:17: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = subview<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
   16 |     if(is_finite(y.row(i))){n_rows += 1;}
      |        ~~~~~~~~~^~~~~~~~~~
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
  181 | is_finite(const Base<typename T1::elem_type,T1>& X)
      | ^~~~~~~~~
g++  -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -I./include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c probKMAImpl.cpp -o probKMAImpl.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/ProbKMA.hpp:4,
                 from probKMAImpl.cpp:1:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
probKMAImpl.cpp: In member function 'Rcpp::List ProbKMA::_probKMAImp::compute_silhouette(bool)':
probKMAImpl.cpp:755:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  755 |         if(!arma::is_finite(sil))
      |             ~~~~~~~~~~~~~~~^~~~~
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
g++ -shared -s -static-libgcc -o funMoDisco.dll tmp.def DissimilarityH1.o DissimilarityL2.o MotifH1.o MotifL2.o MotifSobol.o Parameters.o PerformanceH1.o PerformanceL2.o RcppExports.o SobolDiss.o probKMAImpl.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-funMoDisco/00new/funMoDisco/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (funMoDisco)