downloading reverse dependencies ... downloading fst_0.9.8.tar.gz ... ok downloading lazyarray_1.1.0.tar.gz ... ok installing dependencies ‘dipsaus’, ‘fstcore’ begin installing package ‘dipsaus’ begin installing package ‘fstcore’ * installing *source* package ‘fstcore’ ... ** this is package ‘fstcore’ version ‘0.10.0’ ** using staged installation 1.8.1 Found pkg-config cflags and libs for LZ4! 1.8.1 Found pkg-config cflags and libs for ZSTD! ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTYCXzV/R.INSTALL1d87cd793752e4/fstcore/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c flex_store.cpp -o flex_store.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fst_blockrunner_char.cpp -o fst_blockrunner_char.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fst_compress.cpp -o fst_compress.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fst_error.cpp -o fst_error.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fst_table.cpp -o fst_table.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c openmp.cpp -o openmp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c versions.cpp -o versions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/compression/compression.cpp -o fstlib/compression/compression.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/compression/compressor.cpp -o fstlib/compression/compressor.o ar rcs libCOMPRESSION.a fstlib/compression/compression.o fstlib/compression/compressor.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/interface/openmphelper.cpp -o fstlib/interface/openmphelper.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/interface/fststore.cpp -o fstlib/interface/fststore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/logical/logical_v10.cpp -o fstlib/logical/logical_v10.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/integer/integer_v8.cpp -o fstlib/integer/integer_v8.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/byte/byte_v12.cpp -o fstlib/byte/byte_v12.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/double/double_v9.cpp -o fstlib/double/double_v9.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/character/character_v6.cpp -o fstlib/character/character_v6.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/factor/factor_v7.cpp -o fstlib/factor/factor_v7.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/blockstreamer/blockstreamer_v2.cpp -o fstlib/blockstreamer/blockstreamer_v2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/integer64/integer64_v11.cpp -o fstlib/integer64/integer64_v11.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fstlib/byteblock/byteblock_v13.cpp -o fstlib/byteblock/byteblock_v13.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fstlib/ZSTD/common/xxhash.c -o fstlib/ZSTD/common/xxhash.o ar rcs libFRAME.a fstlib/interface/openmphelper.o fstlib/interface/fststore.o fstlib/logical/logical_v10.o fstlib/integer/integer_v8.o fstlib/byte/byte_v12.o fstlib/double/double_v9.o fstlib/character/character_v6.o fstlib/factor/factor_v7.o fstlib/blockstreamer/blockstreamer_v2.o fstlib/integer64/integer64_v11.o fstlib/byteblock/byteblock_v13.o fstlib/ZSTD/common/xxhash.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o fstcore.so RcppExports.o flex_store.o fst_blockrunner_char.o fst_compress.o fst_error.o fst_table.o openmp.o versions.o -fopenmp ./libFRAME.a ./libCOMPRESSION.a -llz4 -lxxhash -lzstd -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTYCXzV/R.INSTALL1d87cd793752e4/fstcore/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fstcore/00new/fstcore/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fstcore) * installing *source* package ‘dipsaus’ ... ** this is package ‘dipsaus’ version ‘0.3.0’ ** package ‘dipsaus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwJjq3q/R.INSTALL1d87cb7807b786/dipsaus/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c forelse.cpp -o forelse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_arrayShift.cpp -o rcpp_arrayShift.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_baselineArray.cpp -o rcpp_baselineArray.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_collapse.cpp -o rcpp_collapse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastCov.cpp -o rcpp_fastCov.o rcpp_fastCov.cpp: In member function ‘virtual void FastCov::operator()(std::size_t, std::size_t)’: rcpp_fastCov.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 47 | for(jj = begin; jj < end; jj++, pt_cm2++){ | ~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_median.cpp -o rcpp_median.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o dipsaus.so RcppExports.o forelse.o rcpp_arrayShift.o rcpp_baselineArray.o rcpp_collapse.o rcpp_fastCov.o rcpp_median.o utils.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwJjq3q/R.INSTALL1d87cb7807b786/dipsaus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dipsaus/00new/dipsaus/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dipsaus) checking fstcore_0.10.0.tar.gz ... checking fst_0.9.8.tar.gz ... checking lazyarray_1.1.0.tar.gz ... Depends: Package: fstcore Depends: R (>= 3.0.0) Imports: Rcpp LinkingTo: Rcpp Timings: user system elapsed fstcore 41.558 5.218 47.762 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 1 Check results summary: fstcore ... OK rdepends_fst ... OK rdepends_lazyarray ... NOTE * checking C++ specification ... NOTE