* using log directory ‘/srv/hornik/tmp/CRAN_pretest/framework.Rcheck’
* using R Under development (unstable) (2026-02-03 r89375)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1+b1)
    Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-02-04 17:11:14 UTC
* checking for file ‘framework/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘framework’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Erik Westlund <erik@pequod.sh>’

New submission

Suggests or Enhances not in mainstream repositories:
  httpgd, qs
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘httpgd’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘framework’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] NOTE
Found the following possibly unsafe calls:
File ‘framework/R/scaffold.R’:
  unlockBinding("config", .GlobalEnv)

Found the following assignments to the global environment:
File ‘framework/R/scaffold.R’:
  assign("config", config_obj, envir = .GlobalEnv)
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [8s/8s] ERROR
  Running ‘testthat.R’ [8s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(framework)
  
  Attaching package: 'framework'
  
  The following objects are masked from 'package:testthat':
  
      capture_output, setup
  
  The following object is masked from 'package:methods':
  
      new
  
  > 
  > test_check("framework")
  Loaded 1 function(s) from my-functions
  ✓ Author information updated in settings.yml
    Name: Jane Doe
    Email: jane@example.com
    Affiliation: Test University
  ✓ Data source 'inputs.raw.survey' added to settings.yml
    File: inputs/raw/survey.csv
    Type: csv
    Locked: yes
  
  Load with: data_read("inputs.raw.survey")
  ✓ Data source 'mydata' added to settings.yml
    File: data/mydata.csv
    Type: csv
  
  Load with: data_read("mydata")
  ✓ Connection 'mydb' added to settings.yml
    Driver: sqlite
    Database: data/mydb.db
  
  Use with: query_get("SELECT * FROM table", "mydb")
  ✓ Connection 'warehouse' added to settings.yml
    Driver: postgresql
    Host: localhost
    Port: 5432
    Database: analytics
    User: analyst
  
  Use with: query_get("SELECT * FROM table", "warehouse")
  ✓ Added package 'dplyr' to settings.yml
    Auto-attach: yes
  
  Run scaffold() to install and load packages
  ✓ Added package 'tidyverse/dplyr@main' to settings.yml
    Auto-attach: no
  
  Run scaffold() to install and load packages
  ✓ Added package 'ggplot2' to settings.yml
    Auto-attach: yes
  
  Run scaffold() to install and load packages
  ✓ Updated package 'ggplot2@3.4.0' in settings.yml
    Auto-attach: no
  
  Run scaffold() to install and load packages
  ✓ Directory 'notebooks' set to 'analysis' in settings.yml
  Create directory 'analysis'? [Y/n]:   Created directory: analysis
  ✓ Directory 'custom_dir' set to 'my_custom_path' in settings.yml
  Create directory 'my_custom_path'? [Y/n]:   Created directory: my_custom_path
  Installing NonExistentPackage package for FakeDB connections...
  ✓ Created framework.db with schema
  ✓ Created framework.db with schema
  Updated .gitignore with renv entries
  Updated .gitignore with renv entries
  ✓ Created framework.db with schema
  ✓ Created framework.db with schema
  ✓ Created framework.db with schema
  ✓ Created framework.db with schema
  ✓ Created framework.db with schema
  [ FAIL 3 | WARN 5 | SKIP 97 | PASS 629 ]
  
  ══ Skipped tests (97) ══════════════════════════════════════════════════════════
  • Encrypted haven files not yet testable (1): 'test-haven.R:75:3'
  • Fixture file not found (13): 'test-haven.R:4:3', 'test-haven.R:18:3',
    'test-haven.R:29:3', 'test-haven.R:40:3', 'test-haven.R:54:3',
    'test-haven.R:65:3', 'test-haven.R:91:3', 'test-haven.R:102:3',
    'test-haven.R:112:3', 'test-haven.R:122:3', 'test-haven.R:138:3',
    'test-haven.R:148:3', 'test-haven.R:161:3'
  • MySQL not available (1): 'test-schema-multi.R:62:3'
  • MySQL server not available (Docker not running?) (1):
    'test-connections-multi.R:80:5'
  • On CRAN (74): 'test-api-settings.R:4:3', 'test-api-settings.R:42:3',
    'test-api-settings.R:85:3', 'test-api-settings.R:111:3',
    'test-api-settings.R:146:3', 'test-api-settings.R:181:3',
    'test-api-settings.R:211:3', 'test-api-settings.R:242:3',
    'test-api-settings.R:272:3', 'test-api-settings.R:302:3',
    'test-api-settings.R:344:3', 'test-api-settings.R:380:3',
    'test-api-settings.R:420:3', 'test-configure-ai.R:61:3',
    'test-configure-ai.R:102:3', 'test-configure-ai.R:126:3',
    'test-configure-ai.R:145:3', 'test-configure-ai.R:186:3',
    'test-configure-global.R:5:3', 'test-configure-global.R:20:3',
    'test-configure-global.R:49:3', 'test-configure-global.R:74:3',
    'test-configure-global.R:90:3', 'test-configure-global.R:106:3',
    'test-configure-global.R:122:3', 'test-configure-global.R:138:3',
    'test-configure-global.R:158:3', 'test-configure-global.R:184:3',
    'test-configure-global.R:204:3', 'test-configure-global.R:226:3',
    'test-configure-global.R:250:3', 'test-configure-global.R:286:3',
    'test-configure-global.R:322:3', 'test-configure-global.R:345:3',
    'test-configure-global.R:367:3', 'test-configure-global.R:389:3',
    'test-configure-global.R:411:3', 'test-configure-global.R:455:3',
    'test-configure-global.R:486:3', 'test-configure-global.R:514:3',
    'test-configure-global.R:545:3', 'test-configure-global.R:566:3',
    'test-configure-global.R:605:3', 'test-configure-global.R:636:3',
    'test-configure-global.R:668:3', 'test-doc-regressions.R:2:3',
    'test-doc-regressions.R:17:3', 'test-doc-regressions.R:39:3',
    'test-doc-regressions.R:53:3', 'test-doc-regressions.R:75:3',
    'test-doc-regressions.R:88:3', 'test-project-creation-workflow.R:8:3',
    'test-project-creation-workflow.R:63:3',
    'test-project-creation-workflow.R:113:3',
    'test-project-creation-workflow.R:166:3',
    'test-project-creation-workflow.R:193:3',
    'test-project-creation-workflow.R:275:3', 'test-project-settings-api.R:2:3',
    'test-project-settings-api.R:113:3', 'test-project-settings-api.R:182:3',
    'test-project-settings-api.R:233:3', 'test-project-settings-api.R:288:3',
    'test-project_create.R:3:3', 'test-project_create.R:71:3',
    'test-project_create.R:126:3', 'test-project_create.R:157:3',
    'test-project_create.R:190:3', 'test-project_create.R:224:3',
    'test-project_create.R:255:3', 'test-project_create.R:289:3',
    'test-project_create.R:325:3', 'test-quarto-generation.R:2:3',
    'test-quarto-generation.R:44:3', 'test-s3-legacy.R:2:3'
  • PostgreSQL not available (2): 'test-schema-multi.R:39:3',
    'test-transactions-multi.R:171:3'
  • PostgreSQL server not available (Docker not running?) (1):
    'test-connections-multi.R:46:5'
  • Requires git repository (1): 'test-security_audit.R:247:3'
  • S3_TEST_BUCKET not set - skipping integration tests (1):
    'test-publish.R:361:3'
  • Test isolation issue - .is_initialized() searches parent directories (1):
    'test-init.R:9:3'
  • empty test (1): 'test-security_audit.R:541:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-publish.R:38:3'): .resolve_s3_connection finds explicit connection ──
  Error: No S3 connections configured. Add one via the GUI or in settings.yml:
  
  connections:
    storage_buckets:
      my_s3:
        bucket: my-bucket
        region: us-east-1
    default_storage_bucket: my_s3
  Backtrace:
      ▆
   1. └─framework:::.resolve_s3_connection("my_s3") at test-publish.R:38:3
  ── Error ('test-publish.R:87:3'): .resolve_s3_connection finds default connection ──
  Error: No S3 connections configured. Add one via the GUI or in settings.yml:
  
  connections:
    storage_buckets:
      my_s3:
        bucket: my-bucket
        region: us-east-1
    default_storage_bucket: my_s3
  Backtrace:
      ▆
   1. └─framework:::.resolve_s3_connection(NULL) at test-publish.R:87:3
  ── Error ('test-publish.R:221:3'): .resolve_s3_connection errors when missing credentials ──
  Error: No S3 connections configured. Add one via the GUI or in settings.yml:
  
  connections:
    storage_buckets:
      my_s3:
        bucket: my-bucket
        region: us-east-1
    default_storage_bucket: my_s3
  Backtrace:
      ▆
   1. ├─testthat::expect_error(...) at test-publish.R:221:3
   2. │ └─testthat:::expect_condition_matching_(...)
   3. │   └─testthat:::quasi_capture(...)
   4. │     ├─testthat (local) .capture(...)
   5. │     │ └─base::withCallingHandlers(...)
   6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   7. └─framework:::.resolve_s3_connection("my_s3")
  
  [ FAIL 3 | WARN 5 | SKIP 97 | PASS 629 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [6s/6s] OK
* checking HTML version of manual ... [5s/5s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs