* using log directory ‘/srv/hornik/tmp/CRAN_pretest/frailtypack.Rcheck’ * using R Under development (unstable) (2025-10-28 r88973) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (7) Debian flang-new version 19.1.7 (7) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘frailtypack/DESCRIPTION’ ... OK * this is package ‘frailtypack’ version ‘3.8.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/8s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘frailtypack’ can be installed ... [196s/128s] OK * used C compiler: ‘Debian clang version 19.1.7 (7)’ * used Fortran compiler: ‘Debian flang-new version 19.1.7 (7)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [79s/79s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [13s/13s] OK * checking for unstated dependencies in ‘demo’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] OK * checking PDF version of manual ... [11s/11s] OK * checking HTML version of manual ... [6s/5s] NOTE Found the following HTML validation problems: GenfrailtyPenal.html:39:4 (GenfrailtyPenal.Rd:338): Warning: attribute "width" has invalid value "512px" GenfrailtyPenal.html:49:4 (GenfrailtyPenal.Rd:348): Warning: attribute "width" has invalid value "512px" GenfrailtyPenal.html:76:4 (GenfrailtyPenal.Rd:375): Warning: attribute "width" has invalid value "512px" GenfrailtyPenal.html:84:4 (GenfrailtyPenal.Rd:383): Warning: attribute "width" has invalid value "731px" GenfrailtyPenal.html:90:4 (GenfrailtyPenal.Rd:390): Warning: attribute "width" has invalid value "512px" GenfrailtyPenal.html:117:4 (GenfrailtyPenal.Rd:417): Warning: attribute "width" has invalid value "512px" GenfrailtyPenal.html:156:4 (GenfrailtyPenal.Rd:458): Warning: attribute "width" has invalid value "512px" GenfrailtyPenal.html:193:4 (GenfrailtyPenal.Rd:496): Warning: attribute "width" has invalid value "512px" GenfrailtyPenal.html:204:4 (GenfrailtyPenal.Rd:507): Warning: attribute "width" has invalid value "512px" additivePenal.html:40:4 (additivePenal.Rd:166): Warning: attribute "width" has invalid value "439px" frailtyCmprsk.html:28:4 (frailtyCmprsk.Rd:138): Warning: attribute "width" has invalid value "329px" frailtyIllnessDeath.html:31:4 (frailtyIllnessDeath.Rd:171): Warning: attribute "width" has invalid value "329px" jointSurroCopPenal.html:42:4 (jointSurroCopPenal.Rd:260): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:46:4 (jointSurroCopPenal.Rd:264): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:50:4 (jointSurroCopPenal.Rd:268): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:60:4 (jointSurroCopPenal.Rd:278): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:80:4 (jointSurroCopPenal.Rd:299): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:84:4 (jointSurroCopPenal.Rd:303): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:97:4 (jointSurroCopPenal.Rd:317): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:113:4 (jointSurroCopPenal.Rd:334): Warning: attribute "width" has invalid value "731px" jointSurroCopPenal.html:470:1 (jointSurroCopPenal.Rd:201): Warning: attribute "width" has invalid value "365px" jointSurroPenal.html:36:4 (jointSurroPenal.Rd:320): Warning: attribute "width" has invalid value "731px" jointSurroPenal.html:47:4 (jointSurroPenal.Rd:331): Warning: attribute "width" has invalid value "731px" jointSurroPenal.html:63:4 (jointSurroPenal.Rd:347): Warning: attribute "width" has invalid value "731px" jointSurroPenal.html:82:4 (jointSurroPenal.Rd:366): Warning: attribute "width" has invalid value "731px" jointSurroPenal.html:101:4 (jointSurroPenal.Rd:386): Warning: attribute "width" has invalid value "731px" jointSurroPenal.html:115:4 (jointSurroPenal.Rd:401): Warning: attribute "width" has invalid value "365px" jointSurroPenal.html:552:1 (jointSurroPenal.Rd:256): Warning: attribute "width" has invalid value "365px" longiPenal.html:35:4 (longiPenal.Rd:313): Warning: attribute "width" has invalid value "731px" multivPenal.html:39:4 (multivPenal.Rd:229): Warning: attribute "width" has invalid value "731px" multivPenal.html:55:4 (multivPenal.Rd:245): Warning: attribute "width" has invalid value "731px" prediction.html:32:4 (prediction.Rd:107): Warning: attribute "width" has invalid value "731px" prediction.html:41:4 (prediction.Rd:116): Warning: attribute "width" has invalid value "731px" prediction.html:46:4 (prediction.Rd:121): Warning: attribute "width" has invalid value "731px" prediction.html:57:4 (prediction.Rd:132): Warning: attribute "width" has invalid value "731px" prediction.html:62:4 (prediction.Rd:137): Warning: attribute "width" has invalid value "731px" prediction.html:71:4 (prediction.Rd:146): Warning: attribute "width" has invalid value "731px" prediction.html:86:4 (prediction.Rd:161): Warning: attribute "width" has invalid value "731px" prediction.html:117:4 (prediction.Rd:192): Warning: attribute "width" has invalid value "731px" prediction.html:122:4 (prediction.Rd:197): Warning: attribute "width" has invalid value "731px" prediction.html:128:4 (prediction.Rd:203): Warning: attribute "width" has invalid value "731px" prediction.html:140:4 (prediction.Rd:215): Warning: attribute "width" has invalid value "731px" prediction.html:141:1 (prediction.Rd:216): Warning: attribute "width" has invalid value "731px" prediction.html:166:13 (prediction.Rd:241): Warning: attribute "width" has invalid value "731px" prediction.html:174:4 (prediction.Rd:249): Warning: attribute "width" has invalid value "731px" prediction.html:175:1 (prediction.Rd:250): Warning: attribute "width" has invalid value "731px" prediction.html:185:4 (prediction.Rd:260): Warning: attribute "width" has invalid value "731px" prediction.html:202:4 (prediction.Rd:277): Warning: attribute "width" has invalid value "731px" ste.html:85:4 (ste.Rd:61): Warning: attribute "width" has invalid value "439px" ste.html:87:10 (ste.Rd:63): Warning: attribute "width" has invalid value "22px" trivPenal.html:35:4 (trivPenal.Rd:290): Warning: attribute "width" has invalid value "731px" trivPenal.html:56:4 (trivPenal.Rd:311): Warning: attribute "width" has invalid value "731px" trivPenalNL.html:35:4 (trivPenalNL.Rd:301): Warning: attribute "width" has invalid value "731px" trivPenalNL.html:59:4 (trivPenalNL.Rd:325): Warning: attribute "width" has invalid value "731px" trivPenalNL.html:75:4 (trivPenalNL.Rd:341): Warning: attribute "width" has invalid value "731px" * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE