downloading reverse dependencies ... downloading PDXpower_1.0.3.tar.gz ... ok downloading icensBKL_1.5.tar.gz ... ok downloading INLAjoint_24.3.25.tar.gz ... ok installing dependencies ‘bayesSurv’, ‘dynsurv’, ‘FHtest’, ‘frailtypack’, ‘Icens’, ‘INLA’, ‘interval’, ‘JMbayes2’, ‘mixAK’, ‘smcure’, ‘smoothSurv’, ‘survC1’ Warning: package ‘INLA’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependency ‘perm’ begin installing package ‘perm’ begin installing package ‘survC1’ begin installing package ‘Icens’ begin installing package ‘smoothSurv’ begin installing package ‘mixAK’ begin installing package ‘dynsurv’ begin installing package ‘JMbayes2’ begin installing package ‘smcure’ * installing *source* package ‘perm’ ... ** package ‘perm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (perm) * installing *source* package ‘smcure’ ... ** package ‘smcure’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smcure) * installing *source* package ‘survC1’ ... ** package ‘survC1’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmdUdHT/R.INSTALL2a283d9209aec/survC1/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c husurvC1v1.f -o husurvC1v1.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survC1_init.c -o survC1_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o survC1.so husurvC1v1.o survC1_init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmdUdHT/R.INSTALL2a283d9209aec/survC1/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-survC1/00new/survC1/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survC1) begin installing package ‘frailtypack’ * installing *source* package ‘Icens’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Icens) begin installing package ‘interval’ * installing *source* package ‘interval’ ... ** package ‘interval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interval) begin installing package ‘FHtest’ * installing *source* package ‘FHtest’ ... ** package ‘FHtest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FHtest) * installing *source* package ‘dynsurv’ ... ** package ‘dynsurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJIWNfL/R.INSTALL2a28395e6feeb3/dynsurv/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c IntRegPar.cpp -o IntRegPar.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from ublas.h:14, from IntRegPar.h:15, from IntRegPar.cpp:10: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:16: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c arms.c -o arms.o arms.c: In function ‘meet’: arms.c:769:48: warning: ‘dr’ may be used uninitialized [-Wmaybe-uninitialized] 769 | q->y = (dl * q->pr->y + dr * q->pl->y + dl * dr)/(dl + dr); | ~~~^~~~ arms.c:697:23: note: ‘dr’ was declared here 697 | double gl,gr,grl,dl,dr; | ^~ arms.c: In function ‘invert’: arms.c:448:19: warning: ‘xr’ may be used uninitialized [-Wmaybe-uninitialized] 448 | if ((p->x < xl) || (p->x > xr))return(1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~ arms.c:393:23: note: ‘xr’ was declared here 393 | double u, xl = 0.0, xr,yl,yr,eyl,eyr,prop; //,z; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesCox.cpp -o bayesCox.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from ublas.h:14, from IntRegPar.h:15, from TimeIndepCoxModel.h:16, from bayesCox.cpp:3: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from IntRegPrior.h:14, from TimeIndepCoxModel.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from TimeIndepCoxModel.h:17: TimeIndepModel.h: In instantiation of ‘void ir::TimeIndepModel::sampleBeta(const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalPrior&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::TimeIndepCoxPar]’: TimeIndepCoxModel.h:78:19: required from ‘void ir::TimeIndepCoxModel::gibbsKernel(const Prior&, ir::TimeIndepCoxPar&) [with Prior = ir::CoxPrior]’ 78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeIndepCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:51:18: required from here 51 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TimeIndepModel.h:65:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 65 | int err; | ^~~ TimeIndepModel.h: In instantiation of ‘void ir::TimeIndepModel::sampleBeta(const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalPrior&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::TimeIndepCoxPar]’: TimeIndepCoxModel.h:78:19: required from ‘void ir::TimeIndepCoxModel::gibbsKernel(const Prior&, ir::TimeIndepCoxPar&) [with Prior = ir::CoxPrior]’ 78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeIndepCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:79:18: required from here 79 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TimeIndepModel.h:65:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 65 | int err; | ^~~ In file included from TimeVaryingCoxModel.h:17, from bayesCox.cpp:4: TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel::sampleBeta(const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::TimeVaryingCoxPar]’: TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior]’ 78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:108:18: required from here 108 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TimeVaryingModel.h:85:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 85 | int err; | ^~~ TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel::sampleBeta(const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::TimeVaryingCoxPar]’: TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior]’ 78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:137:18: required from here 137 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TimeVaryingModel.h:162:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 162 | int err; | ^~~ TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel::sampleBeta(const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::TimeVaryingCoxPar]’: TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior]’ 78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:168:18: required from here 168 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TimeVaryingModel.h:85:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 85 | int err; | ^~~ TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel::sampleBeta(const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::TimeVaryingCoxPar]’: TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior]’ 78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:197:18: required from here 197 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TimeVaryingModel.h:162:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 162 | int err; | ^~~ In file included from DynamicCoxModel.h:17, from bayesCox.cpp:5: DynamicModel.h: In instantiation of ‘void ir::DynamicModel::sampleBeta(Size, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::DynamicCoxPar; Size = long unsigned int]’: DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior]’ 136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:229:18: required from here 229 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 355 | int err; | ^~~ DynamicModel.h: In instantiation of ‘void ir::DynamicModel::sampleBeta(Size, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::DynamicCoxPar; Size = long unsigned int]’: DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior]’ 136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:262:18: required from here 262 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 452 | int err; | ^~~ DynamicModel.h: In instantiation of ‘void ir::DynamicModel::sampleBeta(Size, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::DynamicCoxPar; Size = long unsigned int]’: DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior]’ 136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel_v2 >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:297:18: required from here 297 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 355 | int err; | ^~~ DynamicModel.h: In instantiation of ‘void ir::DynamicModel::sampleBeta(Size, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::DynamicCoxPar; Size = long unsigned int]’: DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior]’ 136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel_v2 >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:329:18: required from here 329 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 452 | int err; | ^~~ DynamicModel.h: In instantiation of ‘void ir::DynamicModel::sampleBeta(Size, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::DynamicCoxPar; Size = long unsigned int]’: DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior]’ 136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:364:18: required from here 364 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 355 | int err; | ^~~ DynamicModel.h: In instantiation of ‘void ir::DynamicModel::sampleBeta(Size, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const boost::numeric::ublas::matrix&, const boost::numeric::ublas::vector&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix&, boost::numeric::ublas::vector&) [with Prior = ir::CoxPrior; Par = ir::DynamicCoxPar; Size = long unsigned int]’: DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior]’ 136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | prior.coef_prior, par.beta, par.nu); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel >; Prior_type = ir::CoxPrior; Size = long unsigned int]’ 94 | pm_->gibbsKernel(prior, par); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bayesCox.cpp:397:18: required from here 397 | gs.runGibbs(prior, static_cast(p_verbose[0]), p_nReport[0]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable] 452 | int err; | ^~~ In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:27, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from IntRegModel.h:18, from TimeIndepModel.h:15: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeIndepCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeIndepCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::TimeIndepCoxModel >; Y = ir::TimeIndepCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::TimeIndepCoxModel >; T = ir::TimeIndepCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:48:40: required from here 48 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeIndepCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeIndepCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeIndepCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::TimeIndepCoxModel >; Y = ir::TimeIndepCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::TimeIndepCoxModel >; T = ir::TimeIndepCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:76:40: required from here 76 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeIndepCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel >; Y = ir::TimeVaryingCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel >; T = ir::TimeVaryingCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:104:40: required from here 104 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel >; Y = ir::TimeVaryingCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel >; T = ir::TimeVaryingCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:133:40: required from here 133 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel >; Y = ir::TimeVaryingCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel >; T = ir::TimeVaryingCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:164:40: required from here 164 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel >; Y = ir::TimeVaryingCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel >; T = ir::TimeVaryingCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:193:40: required from here 193 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::DynamicCoxModel >; Y = ir::DynamicCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::DynamicCoxModel >; T = ir::DynamicCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:224:40: required from here 224 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::DynamicCoxModel >; Y = ir::DynamicCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::DynamicCoxModel >; T = ir::DynamicCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:257:40: required from here 257 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel_v2 >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel_v2 >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::DynamicCoxModel_v2 >; Y = ir::DynamicCoxModel_v2 >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::DynamicCoxModel_v2 >; T = ir::DynamicCoxModel_v2 >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:292:40: required from here 292 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel_v2 >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel_v2 >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel_v2 >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::DynamicCoxModel_v2 >; Y = ir::DynamicCoxModel_v2 >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::DynamicCoxModel_v2 >; T = ir::DynamicCoxModel_v2 >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:324:40: required from here 324 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel_v2 >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::DynamicCoxModel >; Y = ir::DynamicCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::DynamicCoxModel >; T = ir::DynamicCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:359:40: required from here 359 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel >]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel >]’ 154 | boost::checked_delete( p ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:280:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr*, Y*, shared_count&) [with T = ir::DynamicCoxModel >; Y = ir::DynamicCoxModel >]’ 280 | boost::detail::shared_count( p ).swap( pn ); | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:374:44: required from ‘boost::shared_ptr::shared_ptr(Y*) [with Y = ir::DynamicCoxModel >; T = ir::DynamicCoxModel >]’ 374 | boost::detail::sp_pointer_construct( this, p, pn ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesCox.cpp:392:40: required from here 392 | boost::shared_ptr pm(new M(pd)); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 44 | delete x; | ^~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dynsurv_init.c -o dynsurv_init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o dynsurv.so IntRegPar.o arms.o bayesCox.o dynsurv_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJIWNfL/R.INSTALL2a28395e6feeb3/dynsurv/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dynsurv/00new/dynsurv/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dynsurv) * installing *source* package ‘smoothSurv’ ... ** package ‘smoothSurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp21ybxj/R.INSTALL2a283813b5f1b9/smoothSurv/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00smoothSurv_init.cpp -o 00smoothSurv_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AKmatrix.cpp -o AKmatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Scythe_IDE.cpp -o Scythe_IDE.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Scythe_LA.cpp -o Scythe_LA.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Scythe_Math.cpp -o Scythe_Math.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Scythe_Matrix.cpp -o Scythe_Matrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Scythe_Stat.cpp -o Scythe_Stat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c convertCAD.cpp -o convertCAD.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c createPosDef.cpp -o createPosDef.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c difference.cpp -o difference.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c eispackFORT.cpp -o eispackFORT.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gauss.cpp -o gauss.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c linpackFORT.cpp -o linpackFORT.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c penalLogLik.cpp -o penalLogLik.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c smoothSurvReg84.cpp -o smoothSurvReg84.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solve.QP.compact.cpp -o solve.QP.compact.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o smoothSurv.so 00smoothSurv_init.o AKmatrix.o Scythe_IDE.o Scythe_LA.o Scythe_Math.o Scythe_Matrix.o Scythe_Stat.o convertCAD.o createPosDef.o difference.o eispackFORT.o gauss.o linpackFORT.o penalLogLik.o smoothSurvReg84.o solve.QP.compact.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp21ybxj/R.INSTALL2a283813b5f1b9/smoothSurv/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-smoothSurv/00new/smoothSurv/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smoothSurv) begin installing package ‘bayesSurv’ * installing *source* package ‘JMbayes2’ ... ** package ‘JMbayes2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2VnUh9/R.INSTALL2a283f4d21eb69/JMbayes2/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mcmc_fit.cpp -o mcmc_fit.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o JMbayes2.so RcppExports.o init.o mcmc_fit.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2VnUh9/R.INSTALL2a283f4d21eb69/JMbayes2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-JMbayes2/00new/JMbayes2/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JMbayes2) * installing *source* package ‘mixAK’ ... ** package ‘mixAK’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuHUs7C/R.INSTALL2a283c25f244b5/mixAK/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00mixAK_init.cpp -o 00mixAK_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_BLAS.cpp -o AK_BLAS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_BSTAT.cpp -o AK_BSTAT.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_LAPACK.cpp -o AK_LAPACK.o AK_LAPACK.cpp: In function ‘void AK_LAPACK::MPpinvSP(double*, double*, int*, const int*)’: AK_LAPACK.cpp:1002:17: warning: variable ‘LTp’ set but not used [-Wunused-but-set-variable] 1002 | static int i, LTp, p_p; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_Utils.cpp -o AK_Utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Dirichlet.cpp -o Dist_Dirichlet.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Discrete.cpp -o Dist_Discrete.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_MVN.cpp -o Dist_MVN.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_MVT.cpp -o Dist_MVT.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TMVN.cpp -o Dist_TMVN.o Dist_TMVN.cpp: In function ‘void Dist::rTMVN2(double*, double*, const double*, const double*, const int*, const double*, const double*, const int*, const int*)’: Dist_TMVN.cpp:84:33: warning: variable ‘aP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~ Dist_TMVN.cpp:84:38: warning: variable ‘bP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~ Dist_TMVN.cpp:84:43: warning: variable ‘GzP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~~ Dist_TMVN.cpp:85:21: warning: variable ‘truncP’ set but not used [-Wunused-but-set-variable] 85 | static const int *truncP; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TNorm.cpp -o Dist_TNorm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TmixMVN.cpp -o Dist_TmixMVN.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TmixNorm.cpp -o Dist_TmixNorm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Wishart.cpp -o Dist_Wishart.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_mixMVN.cpp -o Dist_mixMVN.o Dist_mixMVN.cpp: In function ‘void Dist::dmixMVN_R(double*, double*, double*, double*, int*, const double*, const int*, const double*, const int*, const int*)’: Dist_mixMVN.cpp:213:13: warning: unused variable ‘LTnx’ [-Wunused-variable] 213 | const int LTnx = (*nx * (*nx + 1))/2; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_mixNorm.cpp -o Dist_mixNorm.o Dist_mixNorm.cpp: In function ‘void Dist::dmixNorm_R(double*, const double*, const int*, const double*, const double*, const double*, const int*)’: Dist_mixNorm.cpp:91:7: warning: unused variable ‘k’ [-Wunused-variable] 91 | int k, j; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance.cpp -o GLMM_Deviance.o GLMM_Deviance.cpp: In function ‘void GLMM::Deviance(double*, double*, double*, double*, double*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*)’: GLMM_Deviance.cpp:140:10: warning: unused variable ‘U2_g’ [-Wunused-variable] 140 | double U2_g[5]; | ^~~~ GLMM_Deviance.cpp:141:10: warning: unused variable ‘H2_g’ [-Wunused-variable] 141 | double H2_g[15]; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance2.cpp -o GLMM_Deviance2.o GLMM_Deviance2.cpp: In function ‘void GLMM::Deviance2(double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’: GLMM_Deviance2.cpp:104:28: warning: unused variable ‘bDb’ [-Wunused-variable] 104 | static double log_det_R, bDb, loglik_ik, max_log_pi_ik; | ^~~ GLMM_Deviance2.cpp:130:18: warning: unused variable ‘bscaled_hatP’ [-Wunused-variable] 130 | static double *bscaled_hatP; | ^~~~~~~~~~~~ GLMM_Deviance2.cpp:160:10: warning: unused variable ‘U2_g’ [-Wunused-variable] 160 | double U2_g[5]; | ^~~~ GLMM_Deviance2.cpp:161:10: warning: unused variable ‘H2_g’ [-Wunused-variable] 161 | double H2_g[15]; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance2Pr_obs.cpp -o GLMM_Deviance2Pr_obs.o GLMM_Deviance2Pr_obs.cpp: In function ‘void GLMM::Deviance2Pr_obs(double*, const double*, const double*, const double*, const int*, const int*)’: GLMM_Deviance2Pr_obs.cpp:34:17: warning: unused variable ‘sum_w_L_ik’ [-Wunused-variable] 34 | static double sum_w_L_ik; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_MCMC.cpp -o GLMM_MCMC.o GLMM_MCMC.cpp: In function ‘void GLMM_MCMC(double*, int*, const int*, int*, const double*, double*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*)’: GLMM_MCMC.cpp:96:13: warning: unused variable ‘DEBUG’ [-Wunused-variable] 96 | const int DEBUG = 0; | ^~~~~ GLMM_MCMC.cpp:253:17: warning: unused variable ‘h_df’ [-Wunused-variable] 253 | const double *h_df = g_df + 1; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_NMixRelabel.cpp -o GLMM_NMixRelabel.o GLMM_NMixRelabel.cpp:346:1: warning: "/*" within comment [-Wcomment] 346 | /***** %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% *****/ GLMM_NMixRelabel.cpp: In function ‘void GLMM_NMixRelabel(const int*, const int*, const int*, double*, int*, const int*, const int*, const int*, int*, const double*, double*, const int*, const double*, const int*, const int*, const double*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, int*, int*, int*)’: GLMM_NMixRelabel.cpp:543:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized] 543 | switch (simpleType){ | ^~~~~~ GLMM_NMixRelabel.cpp:392:7: note: ‘simpleType’ was declared here 392 | int simpleType; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_PED.cpp -o GLMM_PED.o GLMM_PED.cpp: In function ‘void GLMM_PED(double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, const int*, int*, const double*, double*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_PED.cpp:123:7: warning: unused variable ‘LT_max_p_fi’ [-Wunused-variable] 123 | int LT_max_p_fi = (max_p_fi * (max_p_fi + 1)) / 2; | ^~~~~~~~~~~ GLMM_PED.cpp:355:7: warning: unused variable ‘max_N_s’ [-Wunused-variable] 355 | int max_N_s = AK_Basic::maxArray(N_s, R); | ^~~~~~~ GLMM_PED.cpp:512:12: warning: unused variable ‘eta_zsrespP’ [-Wunused-variable] 512 | double **eta_zsrespP = R_Calloc(R, double*); | ^~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_copy_shift_eta_meanY_Zresp.cpp -o GLMM_copy_shift_eta_meanY_Zresp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_SZitZiS.cpp -o GLMM_create_SZitZiS.o GLMM_create_SZitZiS.cpp: In function ‘void GLMM::create_SZitZiS(double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_SZitZiS.cpp:129:21: warning: ‘SZitZiS_is’ may be used uninitialized [-Wmaybe-uninitialized] 129 | SZitZiS_is++; | ~~~~~~~~~~^~ GLMM_create_SZitZiS.cpp:34:11: note: ‘SZitZiS_is’ was declared here 34 | double *SZitZiS_is, *SZitZiSP; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_SZitZiS_4longitDA.cpp -o GLMM_create_SZitZiS_4longitDA.o GLMM_create_SZitZiS_4longitDA.cpp: In function ‘void GLMM::create_SZitZiS_4longitDA(double*, double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_SZitZiS_4longitDA.cpp:34:41: warning: unused variable ‘SZitZiSP’ [-Wunused-variable] 34 | double *SZitZiS_c_is, *SZitZiS_d_is, *SZitZiSP, *SZitZiS_prev; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_XtX.cpp -o GLMM_create_XtX.o GLMM_create_XtX.cpp: In function ‘void GLMM::create_XtX(double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_XtX.cpp:109:16: warning: ‘XtX_s’ may be used uninitialized [-Wmaybe-uninitialized] 109 | XtX_s++; | ~~~~~^~ GLMM_create_XtX.cpp:31:11: note: ‘XtX_s’ was declared here 31 | double *XtX_s, *XtXP; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_ZS.cpp -o GLMM_create_ZS.o GLMM_create_ZS.cpp: In function ‘void GLMM::create_ZS(double*, double**, int**, double**, int**, const double*, const int*, const int*, const int*, const int*)’: GLMM_create_ZS.cpp:33:26: warning: unused variable ‘scaleP2’ [-Wunused-variable] 33 | const double *scaleP, *scaleP2; | ^~~~~~~ GLMM_create_ZS.cpp:42:7: warning: unused variable ‘iZS’ [-Wunused-variable] 42 | int iZS = 0; | ^~~ GLMM_create_ZS.cpp:96:31: warning: ‘ZP’ may be used uninitialized [-Wmaybe-uninitialized] 96 | if (*qP) ZrespP[s] = ZP - (*qP - 1); | ~~~^~~~~~~~~~~ GLMM_create_ZS.cpp:31:26: note: ‘ZP’ was declared here 31 | double *ZSP, *Zstart, *ZP; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_ZiS.cpp -o GLMM_create_ZiS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_dY_meanY.cpp -o GLMM_dY_meanY.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_eta_fixed_random2eta_meanY.cpp -o GLMM_eta_fixed_random2eta_meanY.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_fitted_Bernoulli_Logit.cpp -o GLMM_fitted_Bernoulli_Logit.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_fitted_Poisson_Log.cpp -o GLMM_fitted_Poisson_Log.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_linear_predictors.cpp -o GLMM_linear_predictors.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitDA.cpp -o GLMM_longitDA.o GLMM_longitDA.cpp: In function ‘void GLMM_longitDA(double*, const int*, int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, int*)’: GLMM_longitDA.cpp:63:13: warning: unused variable ‘DEBUG’ [-Wunused-variable] 63 | const int DEBUG = 0; | ^~~~~ GLMM_longitDA.cpp:66:14: warning: unused variable ‘m’ [-Wunused-variable] 66 | int s, cl, m, i, j, k; | ^ GLMM_longitDA.cpp:66:20: warning: unused variable ‘j’ [-Wunused-variable] 66 | int s, cl, m, i, j, k; | ^ GLMM_longitDA.cpp:70:13: warning: unused variable ‘R_I’ [-Wunused-variable] 70 | const int R_I = R * *I; | ^~~ GLMM_longitDA.cpp:162:7: warning: unused variable ‘backs’ [-Wunused-variable] 162 | int backs = 1; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitDA2.cpp -o GLMM_longitDA2.o GLMM_longitDA2.cpp: In function ‘void GLMM_longitDA2(const int*, double*, const int*, int*, const int*, const int*, const int*, const int*, int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*)’: GLMM_longitDA2.cpp:435:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 435 | if (*nonSilent && !(iter_lC % *info) || iter_lC == *keepMCMC_cl){ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ GLMM_longitDA2.cpp:85:14: warning: unused variable ‘m’ [-Wunused-variable] 85 | int s, cl, m, i, j, k; | ^ GLMM_longitDA2.cpp:290:7: warning: unused variable ‘backs’ [-Wunused-variable] 290 | int backs = 1; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitPred_nmix_gauss.cpp -o GLMM_longitPred_nmix_gauss.o GLMM_longitPred_nmix_gauss.cpp: In function ‘void GLMM::longitPred_nmix_gauss(double*, double*, double*, double**, double*, double*, double*, int*, double**, int**, double**, double**, double**, int*, double**, int**, double**, const double*, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*)’: GLMM_longitPred_nmix_gauss.cpp:82:31: warning: unused variable ‘eta_randomP’ [-Wunused-variable] 82 | static double *eta_fixedP, *eta_randomP, *eta_zsP; | ^~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_newData.cpp -o GLMM_newData.o GLMM_newData.cpp: In function ‘void GLMM::newData(double*, int*, double*, double*, double*, double*, double*, double*, double*, const double*, const double*, const int*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’: GLMM_newData.cpp:47:15: warning: unused variable ‘fname’ [-Wunused-variable] 47 | const char *fname = "GLMM::newData"; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_scale_ZitZi.cpp -o GLMM_scale_ZitZi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateFixEf.cpp -o GLMM_updateFixEf.o GLMM_updateFixEf.cpp: In function ‘void GLMM::updateFixEf(double*, double*, double*, double*, double*, double*, int*, int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’: GLMM_updateFixEf.cpp:72:40: warning: unused variable ‘dworkP’ [-Wunused-variable] 72 | static double *mu_fullP, *Li_fullP, *dworkP, *beta_propP; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateHyperVars_eps.cpp -o GLMM_updateHyperVars_eps.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateRanEf.cpp -o GLMM_updateRanEf.o GLMM_updateRanEf.cpp:498:5: warning: "/*" within comment [-Wcomment] 498 | /*** +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ***/ GLMM_updateRanEf.cpp: In function ‘void GLMM::updateRanEf(double*, double*, double**, double**, double**, double*, double*, double**, int**, double**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_updateRanEf.cpp:76:32: warning: unused variable ‘row’ [-Wunused-variable] 76 | static int s, i, j, k, itmp, row, col; | ^~~ GLMM_updateRanEf.cpp:76:37: warning: unused variable ‘col’ [-Wunused-variable] 76 | static int s, i, j, k, itmp, row, col; | ^~~ GLMM_updateRanEf.cpp:82:88: warning: unused variable ‘Li_full_backupP’ [-Wunused-variable] 82 | static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP; | ^~~~~~~~~~~~~~~ GLMM_updateRanEf.cpp:82:106: warning: unused variable ‘Li_fullP’ [-Wunused-variable] 82 | static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateRanEf_QR.cpp -o GLMM_updateRanEf_QR.o GLMM_updateRanEf_QR.cpp: In function ‘void GLMM::updateRanEf_QR(double*, double*, double**, double**, double**, double*, int*, double*, double**, int**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_updateRanEf_QR.cpp:73:20: warning: unused variable ‘j’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ GLMM_updateRanEf_QR.cpp:73:23: warning: unused variable ‘k’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ GLMM_updateRanEf_QR.cpp:73:26: warning: unused variable ‘l’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateVars_eps.cpp -o GLMM_updateVars_eps.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Bernoulli_Logit.cpp -o LogLik_Bernoulli_Logit.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Gauss_Identity.cpp -o LogLik_Gauss_Identity.o LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity1(double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:32:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 32 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi1(double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:106:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 106 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi_stres1(double*, double*, double*, double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:188:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 188 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity3(double*, double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:460:20: warning: unused variable ‘k’ [-Wunused-variable] 460 | static int i, j, k; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Poisson_Log.cpp -o LogLik_Poisson_Log.o LogLik_Poisson_Log.cpp: In function ‘void LogLik::Poisson_Log_sqrt_w_phi_stres2(double*, double*, double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*)’: LogLik_Poisson_Log.cpp:295:17: warning: unused variable ‘eta_now’ [-Wunused-variable] 295 | static double eta_now, ll_now; | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_Moments_NormalApprox.cpp -o MCMC_Moments_NormalApprox.o MCMC_Moments_NormalApprox.cpp: In function ‘void MCMC::Moments_NormalApprox(double*, double*, const double*, const double*, const double*, const int*)’: MCMC_Moments_NormalApprox.cpp:96:27: warning: unused variable ‘QP’ [-Wunused-variable] 96 | static double *cmeanP, *QP; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_Moments_NormalApprox_QR.cpp -o MCMC_Moments_NormalApprox_QR.o MCMC_Moments_NormalApprox_QR.cpp: In function ‘void MCMC::Moments_NormalApprox_QR(double*, double*, int*, int*, double*, double*, int*, const double*, const double*, const int*, const int*, const char*)’: MCMC_Moments_NormalApprox_QR.cpp:180:14: warning: unused variable ‘one’ [-Wunused-variable] 180 | static int one = 1; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_loglik_Zwork1_stres.cpp -o MCMC_loglik_Zwork1_stres.o MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: MCMC_loglik_Zwork1_stres.cpp:476:17: warning: unused variable ‘s2’ [-Wunused-variable] 476 | static int s, s2, l; | ^~ MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: MCMC_loglik_Zwork1_stres.cpp:577:17: warning: unused variable ‘s2’ [-Wunused-variable] 577 | static int s, s2, l; | ^~ MCMC_loglik_Zwork1_stres.cpp:577:21: warning: unused variable ‘l’ [-Wunused-variable] 577 | static int s, s2, l; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Misc_findIndexOfPermutation.cpp -o Misc_findIndexOfPermutation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Misc_generatePermutations.cpp -o Misc_generatePermutations.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_ChainsDerived.cpp -o NMix_ChainsDerived.o NMix_ChainsDerived.cpp: In function ‘void NMix_ChainsDerived(double*, double*, int*, const int*, const double*, const int*, const double*, const double*, const double*, const int*, const int*)’: NMix_ChainsDerived.cpp:37:11: warning: unused variable ‘dP’ [-Wunused-variable] 37 | double *dP; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Deviance.cpp -o NMix_Deviance.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_MCMC.cpp -o NMix_MCMC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_NMixRelabel.cpp -o NMix_NMixRelabel.o NMix_NMixRelabel.cpp: In function ‘void NMix_NMixRelabel(const int*, const int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, double*, double*, double*, double*, double*, int*, double*, double*, int*, int*, int*)’: NMix_NMixRelabel.cpp:212:11: warning: unused variable ‘hatPr_yP’ [-Wunused-variable] 212 | double *hatPr_yP = NULL; | ^~~~~~~~ NMix_NMixRelabel.cpp:329:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized] 329 | switch (simpleType){ | ^~~~~~ NMix_NMixRelabel.cpp:207:7: note: ‘simpleType’ was declared here 207 | int simpleType; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED.cpp -o NMix_PED.o NMix_PED.cpp: In function ‘void NMix_PED(double*, double*, double*, double*, int*, int*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const int*, const int*, const int*, const double*, const double*)’: NMix_PED.cpp:56:15: warning: unused variable ‘fname’ [-Wunused-variable] 56 | const char *fname = "NMix_PED"; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED_coreMulti.cpp -o NMix_PED_coreMulti.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED_coreUni.cpp -o NMix_PED_coreUni.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PosterMeanMixParam.cpp -o NMix_PosterMeanMixParam.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Pr_y_and_cum_Pr_y.cpp -o NMix_Pr_y_and_cum_Pr_y.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCDFMarg.cpp -o NMix_PredCDFMarg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCondDensCDFMarg.cpp -o NMix_PredCondDensCDFMarg.o NMix_PredCondDensCDFMarg.cpp: In function ‘void NMix_PredCondDensCDFMarg(double*, double*, int*, const int*, const int*, const double*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’: NMix_PredCondDensCDFMarg.cpp:70:17: warning: unused variable ‘wP’ [-Wunused-variable] 70 | const double *wP = NULL; | ^~ NMix_PredCondDensCDFMarg.cpp:71:17: warning: unused variable ‘muP’ [-Wunused-variable] 71 | const double *muP = NULL; | ^~~ NMix_PredCondDensCDFMarg.cpp:72:17: warning: unused variable ‘LiP’ [-Wunused-variable] 72 | const double *LiP = NULL; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCondDensJoint2.cpp -o NMix_PredCondDensJoint2.o NMix_PredCondDensJoint2.cpp: In function ‘void NMix_PredCondDensJoint2(double*, double*, int*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’: NMix_PredCondDensJoint2.cpp:56:17: warning: unused variable ‘wP’ [-Wunused-variable] 56 | const double *wP = NULL; | ^~ NMix_PredCondDensJoint2.cpp:57:17: warning: unused variable ‘muP’ [-Wunused-variable] 57 | const double *muP = NULL; | ^~~ NMix_PredCondDensJoint2.cpp:58:17: warning: unused variable ‘LiP’ [-Wunused-variable] 58 | const double *LiP = NULL; | ^~~ NMix_PredCondDensJoint2.cpp:105:29: warning: ‘lcgrid’ may be used uninitialized [-Wmaybe-uninitialized] 105 | dens_numer = dens_denom + lcgrid; /** space to store numerator when computing conditional densities **/ | ^~~~~~ NMix_PredCondDensJoint2.cpp:72:7: note: ‘lcgrid’ was declared here 72 | int lcgrid; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDA.cpp -o NMix_PredDA.o NMix_PredDA.cpp: In function ‘void NMix_PredDA(const double*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, double*, int*, int*, double*, int*)’: NMix_PredDA.cpp:39:13: warning: unused variable ‘debug’ [-Wunused-variable] 39 | const int debug = 0; | ^~~~~ NMix_PredDA.cpp:40:15: warning: unused variable ‘fname’ [-Wunused-variable] 40 | const char *fname = "NMix_PredDA"; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDensJoint2.cpp -o NMix_PredDensJoint2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDensMarg.cpp -o NMix_PredDensMarg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_aux_vector_u.cpp -o NMix_RJMCMC_aux_vector_u.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_logJacLambdaVSigma.cpp -o NMix_RJMCMC_logJacLambdaVSigma.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_logJac_part3.cpp -o NMix_RJMCMC_logJac_part3.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCbirth.cpp -o NMix_RJMCMCbirth.o NMix_RJMCMCbirth.cpp: In function ‘void NMix::RJMCMCbirth(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’: NMix_RJMCMCbirth.cpp:54:39: warning: variable ‘dwork_orderComp’ set but not used [-Wunused-but-set-variable] 54 | static double *dwork_misc, *Li4mu, *dwork_orderComp; | ^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCcombine.cpp -o NMix_RJMCMCcombine.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCdeath.cpp -o NMix_RJMCMCdeath.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCsplit.cpp -o NMix_RJMCMCsplit.o NMix_RJMCMCsplit.cpp: In function ‘void NMix::RJMCMCsplit(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int**, double*, double*, double*, double*, int*, int*, const double*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, void (*)(double*, double*, const double*, const int*))’: NMix_RJMCMCsplit.cpp:68:18: warning: variable ‘dlambdaV_dSigma’ set but not used [-Wunused-but-set-variable] 68 | static double *dlambdaV_dSigma; | ^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_costMatrix.cpp -o NMix_Stephens_costMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step1.cpp -o NMix_Stephens_step1.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step2_search.cpp -o NMix_Stephens_step2_search.o NMix_Stephens_step2_search.cpp: In function ‘void NMix::Stephens_step2_search(int*, int*, int*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*)’: NMix_Stephens_step2_search.cpp:37:37: warning: unused variable ‘pij_q’ [-Wunused-variable] 37 | static double minLoss, Loss, pij, pij_q; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step2_transport.cpp -o NMix_Stephens_step2_transport.o NMix_Stephens_step2_transport.cpp: In function ‘void NMix::Stephens_step2_transport(int*, int*, int*, double*, double*, int*, double*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*)’: NMix_Stephens_step2_transport.cpp:37:15: warning: variable ‘orderP’ set but not used [-Wunused-but-set-variable] 37 | static int *orderP, *rankP; | ^~~~~~ NMix_Stephens_step2_transport.cpp:37:24: warning: variable ‘rankP’ set but not used [-Wunused-but-set-variable] 37 | static int *orderP, *rankP; | ^~~~~ NMix_Stephens_step2_transport.cpp:39:17: warning: unused variable ‘minLoss’ [-Wunused-variable] 39 | static double minLoss[1]; | ^~~~~~~ NMix_Stephens_step2_transport.cpp:40:14: warning: unused variable ‘lp_status’ [-Wunused-variable] 40 | static int lp_status[1]; | ^~~~~~~~~ NMix_Stephens_step2_transport.cpp:42:17: warning: unused variable ‘IZERO’ [-Wunused-variable] 42 | static int IZERO[1] = {0}; | ^~~~~ NMix_Stephens_step2_transport.cpp:43:17: warning: unused variable ‘DZERO’ [-Wunused-variable] 43 | static double DZERO[1] = {0}; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Utils.cpp -o NMix_Utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_fullCondMean_WeightsMeansVars.cpp -o NMix_fullCondMean_WeightsMeansVars.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_orderComp.cpp -o NMix_orderComp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_reorder_Pr_y.cpp -o NMix_reorder_Pr_y.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_sum_Ir.cpp -o NMix_sum_Ir.o NMix_sum_Ir.cpp: In function ‘void NMix::sum_Ir(int*, const int*, const int*, const int*, const int*, const int*)’: NMix_sum_Ir.cpp:26:17: warning: unused variable ‘j’ [-Wunused-variable] 26 | static int l, j, m; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateAlloc.cpp -o NMix_updateAlloc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateCensObs.cpp -o NMix_updateCensObs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateHyperVars.cpp -o NMix_updateHyperVars.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateMeansVars.cpp -o NMix_updateMeansVars.o NMix_updateMeansVars.cpp: In function ‘void NMix::updateMeansVars_IC_homoscedastic(double*, double*, double*, double*, double*, int*, int*, double*, int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*)’: NMix_updateMeansVars.cpp:477:38: warning: unused variable ‘log_detsP’ [-Wunused-variable] 477 | static double *QP, *SigmaP, *LiP, *log_detsP, *muP, *mixSSmP, *dP; | ^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateWeights.cpp -o NMix_updateWeights.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_update_sum_Ir_and_sum_Pr_y.cpp -o NMix_update_sum_Ir_and_sum_Pr_y.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rand_RotationMatrix.cpp -o Rand_RotationMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rand_SamplePair.cpp -o Rand_SamplePair.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Stat_BLA.cpp -o Stat_BLA.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Stat_Quantile.cpp -o Stat_Quantile.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mixAK.so 00mixAK_init.o AK_BLAS.o AK_BSTAT.o AK_LAPACK.o AK_Utils.o Dist_Dirichlet.o Dist_Discrete.o Dist_MVN.o Dist_MVT.o Dist_TMVN.o Dist_TNorm.o Dist_TmixMVN.o Dist_TmixNorm.o Dist_Wishart.o Dist_mixMVN.o Dist_mixNorm.o GLMM_Deviance.o GLMM_Deviance2.o GLMM_Deviance2Pr_obs.o GLMM_MCMC.o GLMM_NMixRelabel.o GLMM_PED.o GLMM_copy_shift_eta_meanY_Zresp.o GLMM_create_SZitZiS.o GLMM_create_SZitZiS_4longitDA.o GLMM_create_XtX.o GLMM_create_ZS.o GLMM_create_ZiS.o GLMM_dY_meanY.o GLMM_eta_fixed_random2eta_meanY.o GLMM_fitted_Bernoulli_Logit.o GLMM_fitted_Poisson_Log.o GLMM_linear_predictors.o GLMM_longitDA.o GLMM_longitDA2.o GLMM_longitPred_nmix_gauss.o GLMM_newData.o GLMM_scale_ZitZi.o GLMM_updateFixEf.o GLMM_updateHyperVars_eps.o GLMM_updateRanEf.o GLMM_updateRanEf_QR.o GLMM_updateVars_eps.o LogLik_Bernoulli_Logit.o LogLik_Gauss_Identity.o LogLik_Poisson_Log.o MCMC_Moments_NormalApprox.o MCMC_Moments_NormalApprox_QR.o MCMC_loglik_Zwork1_stres.o Misc_findIndexOfPermutation.o Misc_generatePermutations.o NMix_ChainsDerived.o NMix_Deviance.o NMix_MCMC.o NMix_NMixRelabel.o NMix_PED.o NMix_PED_coreMulti.o NMix_PED_coreUni.o NMix_PosterMeanMixParam.o NMix_Pr_y_and_cum_Pr_y.o NMix_PredCDFMarg.o NMix_PredCondDensCDFMarg.o NMix_PredCondDensJoint2.o NMix_PredDA.o NMix_PredDensJoint2.o NMix_PredDensMarg.o NMix_RJMCMC_aux_vector_u.o NMix_RJMCMC_logJacLambdaVSigma.o NMix_RJMCMC_logJac_part3.o NMix_RJMCMCbirth.o NMix_RJMCMCcombine.o NMix_RJMCMCdeath.o NMix_RJMCMCsplit.o NMix_Stephens_costMatrix.o NMix_Stephens_step1.o NMix_Stephens_step2_search.o NMix_Stephens_step2_transport.o NMix_Utils.o NMix_fullCondMean_WeightsMeansVars.o NMix_orderComp.o NMix_reorder_Pr_y.o NMix_sum_Ir.o NMix_updateAlloc.o NMix_updateCensObs.o NMix_updateHyperVars.o NMix_updateMeansVars.o NMix_updateWeights.o NMix_update_sum_Ir_and_sum_Pr_y.o Rand_RotationMatrix.o Rand_SamplePair.o Stat_BLA.o Stat_Quantile.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuHUs7C/R.INSTALL2a283c25f244b5/mixAK/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixAK/00new/mixAK/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixAK) * installing *source* package ‘bayesSurv’ ... ** package ‘bayesSurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDeSAWw/R.INSTALL2a2b953ed5899/bayesSurv/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00bayesSurv_init.cpp -o 00bayesSurv_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_BLAS_LAPACK.cpp -o AK_BLAS_LAPACK.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ARS2.cpp -o ARS2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GMRF.cpp -o GMRF.o GMRF.cpp: In function ‘void GMRF::dGMRF_inputArgs(double*, double*, double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, double*)’: GMRF.cpp:705:17: warning: variable ‘nx_nc’ set but not used [-Wunused-but-set-variable] 705 | static int j, nx_nc, info; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GMRF_Gspline.cpp -o GMRF_Gspline.o GMRF_Gspline.cpp: In function ‘void GMRF_Gspline::mcmc_GMRF_Gspline(int*, double*, double*, double*, int*, const int*, const int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*)’: GMRF_Gspline.cpp:879:11: warning: variable ‘writeAll’ set but not used [-Wunused-but-set-variable] 879 | int writeAll = 0; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GMRF_Gspline_Util.cpp -o GMRF_Gspline_Util.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gspline.cpp -o Gspline.o Gspline.cpp: In member function ‘void Gspline::print() const’: Gspline.cpp:1052:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1052 | for (j = 0; j < _dim-1; j++) Rprintf("%g, ", _penalty[j]); Rprintf("%g\n", _penalty[_dim-1]); | ^~~ Gspline.cpp:1052:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1052 | for (j = 0; j < _dim-1; j++) Rprintf("%g, ", _penalty[j]); Rprintf("%g\n", _penalty[_dim-1]); | ^~~~~~~ Gspline.cpp:1079:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1079 | for (j = 0; j < _dim-1; j++) Rprintf("%d, ", _k_overrelax_scale[j]); Rprintf("%d\n", _k_overrelax_scale[_dim-1]); | ^~~ Gspline.cpp:1079:74: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1079 | for (j = 0; j < _dim-1; j++) Rprintf("%d, ", _k_overrelax_scale[j]); Rprintf("%d\n", _k_overrelax_scale[_dim-1]); | ^~~~~~~ Gspline.cpp:1081:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1081 | for (j = 0; j < _dim-1; j++) Rprintf("%d, ", _k_overrelax_sigma[j]); Rprintf("%d\n", _k_overrelax_sigma[_dim-1]); | ^~~ Gspline.cpp:1081:74: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1081 | for (j = 0; j < _dim-1; j++) Rprintf("%d, ", _k_overrelax_sigma[j]); Rprintf("%d\n", _k_overrelax_sigma[_dim-1]); | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gspline_update_Intcpt.cpp -o Gspline_update_Intcpt.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gspline_update_Scale.cpp -o Gspline_update_Scale.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gspline_update_a.cpp -o Gspline_update_a.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gspline_update_gamma.cpp -o Gspline_update_gamma.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gspline_update_lambda.cpp -o Gspline_update_lambda.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Gspline_update_sigma.cpp -o Gspline_update_sigma.o Gspline_update_sigma.cpp: In member function ‘void Gspline::update_sigma(const double*, const int*, const int*, const int*)’: Gspline_update_sigma.cpp:22:49: warning: variable ‘itmp’ set but not used [-Wunused-but-set-variable] 22 | static int j, j_, iter_nr, err_nr, overrelax, itmp; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c List.cpp -o List.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MHblocks.cpp -o MHblocks.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MHproposal.cpp -o MHproposal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Mvtdist3.cpp -o Mvtdist3.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Slice_sampler2.cpp -o Slice_sampler2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arms.cpp -o arms.o arms.cpp: In function ‘int meet(POINT*, ENVELOPE*, METROPOLIS*)’: arms.cpp:805:48: warning: ‘dr’ may be used uninitialized [-Wmaybe-uninitialized] 805 | q->y = (dl * q->pr->y + dr * q->pl->y + dl * dr)/(dl + dr); | ~~~^~~~ arms.cpp:732:23: note: ‘dr’ was declared here 732 | double gl,gr,grl,dl,dr; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arrays2Mat.cpp -o arrays2Mat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesBisurvreg.cpp -o bayesBisurvreg.o bayesBisurvreg.cpp: In function ‘void bayesBisurvreg(char**, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*, const int*, double*, double*, int*, int*, const int*, int*, double*, int*, double*, int*, double*, int*, double*, int*, int*, int*, const int*, int*)’: bayesBisurvreg.cpp:472:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 472 | if (beta1->nbeta()) free(XXtb1); if (*doubly && beta2->nbeta()) free(XXtb2); | ^~ bayesBisurvreg.cpp:472:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 472 | if (beta1->nbeta()) free(XXtb1); if (*doubly && beta2->nbeta()) free(XXtb2); | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesDensity.cpp -o bayesDensity.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesGspline.cpp -o bayesGspline.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesHistogram.cpp -o bayesHistogram.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayessurvreg1.cpp -o bayessurvreg1.o bayessurvreg1.cpp: In function ‘void bayessurvreg1(char**, int*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, double*, int*, double*, int*, int*, double*, int*)’: bayessurvreg1.cpp:527:12: warning: variable ‘ru’ set but not used [-Wunused-but-set-variable] 527 | void (*ru) (double*, const double*); | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayessurvreg2.cpp -o bayessurvreg2.o bayessurvreg2.cpp: In function ‘void bayessurvreg2(char**, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*, const int*, double*, double*, double*, int*, int*, const int*, int*, int*, const int*, int*, double*, int*, double*, int*, double*, int*, double*, int*, double*, int*, double*, int*, double*, int*, double*, double*, int*, const int*, const double*, double*, const double*, const int*, const int*, const double*, int*, int*, int*, const int*, const int*, int*)’: bayessurvreg2.cpp:381:16: warning: unused variable ‘RandomIntcpt1’ [-Wunused-variable] 381 | const int *RandomIntcpt1 = priorBeta1I + 3; /** indication of random intercept in model **/ | ^~~~~~~~~~~~~ bayessurvreg2.cpp:382:16: warning: unused variable ‘RandomIntcpt2’ [-Wunused-variable] 382 | const int *RandomIntcpt2 = priorBeta2I + 3; /** introduced on 26/11/2008 **/ | ^~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bblocks.cpp -o bblocks.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c birthDeath.cpp -o birthDeath.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c checkImputeData.cpp -o checkImputeData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cholesky.cpp -o cholesky.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classBetaGamma.cpp -o classBetaGamma.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classBetaGammaExtend.cpp -o classBetaGammaExtend.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classCovMatrix.cpp -o classCovMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classCovMatrixExtend.cpp -o classCovMatrixExtend.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classRandomEff.cpp -o classRandomEff.o classRandomEff.cpp: In member function ‘void RandomEff::print() const’: classRandomEff.cpp:244:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 244 | for (j = 0; j < _nCluster; j++) Rprintf("%d, ", _nwithinCl[j]); Rprintf("\n"); | ^~~ classRandomEff.cpp:244:68: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 244 | for (j = 0; j < _nCluster; j++) Rprintf("%d, ", _nwithinCl[j]); Rprintf("\n"); | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classRandomEff_rhoNorm.cpp -o classRandomEff_rhoNorm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c covMatrix.cpp -o covMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c in_output.cpp -o in_output.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c in_output_GS.cpp -o in_output_GS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logLikelihood.cpp -o logLikelihood.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c marginal_bayesGspline.cpp -o marginal_bayesGspline.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c miscellaneous.cpp -o miscellaneous.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c miscellaneous_GS.cpp -o miscellaneous_GS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mixMoments.cpp -o mixMoments.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c moodyRing.cpp -o moodyRing.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mvtdist.cpp -o mvtdist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newton_raphson.cpp -o newton_raphson.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c openFile.cpp -o openFile.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictMisc.cpp -o predictMisc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictive.cpp -o predictive.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictive_GS.cpp -o predictive_GS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c printArray.cpp -o printArray.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c propVector.cpp -o propVector.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c qrdecomp.cpp -o qrdecomp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c quantile.cpp -o quantile.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cpp -o random.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c randomLogLikelihood.cpp -o randomLogLikelihood.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c regresResidual_GS.cpp -o regresResidual_GS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rhoNorm.cpp -o rhoNorm.o rhoNorm.cpp: In function ‘void rhoNorm::mcmc_rhoNorm(int*, double*, double*, int*, const double*, const double*, const double*, const int*, const int*, const int*, const double*)’: rhoNorm.cpp:462:11: warning: variable ‘writeAll’ set but not used [-Wunused-but-set-variable] 462 | int writeAll = 0; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sampledKendallTau.cpp -o sampledKendallTau.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c splitCombine.cpp -o splitCombine.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c structRandomEff32.cpp -o structRandomEff32.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c templatefun.cpp -o templatefun.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c templatefun_GS.cpp -o templatefun_GS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateAlloc.cpp -o updateAlloc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateCovMatRandom.cpp -o updateCovMatRandom.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateData.cpp -o updateData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateEta.cpp -o updateEta.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateMeans.cpp -o updateMeans.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateRandom.cpp -o updateRandom.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateRegres.cpp -o updateRegres.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateVars.cpp -o updateVars.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updateWeights.cpp -o updateWeights.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c update_Alloc_GS.cpp -o update_Alloc_GS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c update_Data_GS.cpp -o update_Data_GS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c update_sens_spec_misclassification.cpp -o update_sens_spec_misclassification.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o bayesSurv.so 00bayesSurv_init.o AK_BLAS_LAPACK.o ARS2.o GMRF.o GMRF_Gspline.o GMRF_Gspline_Util.o Gspline.o Gspline_update_Intcpt.o Gspline_update_Scale.o Gspline_update_a.o Gspline_update_gamma.o Gspline_update_lambda.o Gspline_update_sigma.o List.o MHblocks.o MHproposal.o Mvtdist3.o Slice_sampler2.o arms.o arrays2Mat.o bayesBisurvreg.o bayesDensity.o bayesGspline.o bayesHistogram.o bayessurvreg1.o bayessurvreg2.o bblocks.o birthDeath.o checkImputeData.o cholesky.o classBetaGamma.o classBetaGammaExtend.o classCovMatrix.o classCovMatrixExtend.o classRandomEff.o classRandomEff_rhoNorm.o covMatrix.o in_output.o in_output_GS.o logLikelihood.o marginal_bayesGspline.o miscellaneous.o miscellaneous_GS.o mixMoments.o moodyRing.o mvtdist.o newton_raphson.o openFile.o predictMisc.o predictive.o predictive_GS.o printArray.o propVector.o qrdecomp.o quantile.o random.o randomLogLikelihood.o regresResidual_GS.o rhoNorm.o sampledKendallTau.o splitCombine.o structRandomEff32.o templatefun.o templatefun_GS.o updateAlloc.o updateCovMatRandom.o updateData.o updateEta.o updateMeans.o updateRandom.o updateRegres.o updateVars.o updateWeights.o update_Alloc_GS.o update_Data_GS.o update_sens_spec_misclassification.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDeSAWw/R.INSTALL2a2b953ed5899/bayesSurv/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bayesSurv/00new/bayesSurv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bayesSurv) * installing *source* package ‘frailtypack’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXjJIu1/R.INSTALL2a297d6b152334/frailtypack/src' gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Adonnees.f90 -o Adonnees.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c AparamMultive.f90 -o AparamMultive.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Aparameters.f90 -o Aparameters.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c autres_fonctions.f90 -o autres_fonctions.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aaOptim_New_scl2.f90 -o aaOptim_New_scl2.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aaOptim_New_scl.f90 -o aaOptim_New_scl.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Integrant_scl.f90 -o Integrant_scl.o Integrant_scl.f90:1249:18: 1249 | frailst=xx1(1) | ^ Warning: ‘MEM [(real(kind=8)[0:] *)_16][0]’ may be used uninitialized [-Wmaybe-uninitialized] gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpa_laplace.f90 -o funcpa_laplace.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpa_adaptative.f90 -o funcpa_adaptative.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Integrale_mult_scl.f90 -o Integrale_mult_scl.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Pour_Adaptative.f90 -o Pour_Adaptative.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aGhermite.f90 -o aGhermite.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aaOptim.f90 -o aaOptim.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aaOptim_SCL_0.f90 -o aaOptim_SCL_0.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aaOptimres.f90 -o aaOptimres.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aaUseFunction.f90 -o aaUseFunction.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aaUseFunctionG.f90 -o aaUseFunctionG.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aamarq98o.f90 -o aamarq98o.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c additive.f90 -o additive.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c afuncpasres.f90 -o afuncpasres.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ahrmsym.f90 -o ahrmsym.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aresidusMartingale.f90 -o aresidusMartingale.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.f90 -o distance.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c epoce.f90 -o epoce.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c epoce_log.f90 -o epoce_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c epoce_long.f90 -o epoce_long.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c epoce_long_nl.f90 -o epoce_long_nl.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fortran_random.c -o fortran_random.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c frailtypack.f90 -o frailtypack.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c frailtypackgen.f90 -o frailtypackgen.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaG_tps.f90 -o funcpaG_tps.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGcpm.f90 -o funcpaGcpm.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGcpm_intcens.f90 -o funcpaGcpm_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGcpm_log.f90 -o funcpaGcpm_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGsplines.f90 -o funcpaGsplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGsplines_intcens.f90 -o funcpaGsplines_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGsplines_log.f90 -o funcpaGsplines_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGweib.f90 -o funcpaGweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGweib_intcens.f90 -o funcpaGweib_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaGweib_log.f90 -o funcpaGweib_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaMultivCpm.f90 -o funcpaMultivCpm.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaMultivSplines.f90 -o funcpaMultivSplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaMultivWeib.f90 -o funcpaMultivWeib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaacpm.f90 -o funcpaacpm.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaasplines.f90 -o funcpaasplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaaweib.f90 -o funcpaaweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpaj_tps.f90 -o funcpaj_tps.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajcompetingsplines.f90 -o funcpajcompetingsplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajcompetingweib.f90 -o funcpajcompetingweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajcpm.f90 -o funcpajcpm.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajcpm_log.f90 -o funcpajcpm_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajgen_tps.f90 -o funcpajgen_tps.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajgeneral.f90 -o funcpajgeneral.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajgenparam.f90 -o funcpajgenparam.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajlongisplines.f90 -o funcpajlongisplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajlongisplines2.f90 -o funcpajlongisplines2.o funcpajlongisplines2.f90:398:54: 398 | Chol(1,1)=bh(np-nva-nb_re-nparammed+1) | ^ Warning: ‘nb_re’ may be used uninitialized [-Wmaybe-uninitialized] funcpajlongisplines2.f90:9:6: 9 | use comon | ^ note: ‘nb_re’ was declared here gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajlongisplines_nl.f90 -o funcpajlongisplines_nl.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajlongiweib.f90 -o funcpajlongiweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajlongiweib_nl.f90 -o funcpajlongiweib_nl.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines.f90 -o funcpajsplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplinesIndiv.f90 -o funcpajsplinesIndiv.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines_copule_surrogate_scl_2.f90 -o funcpajsplines_copule_surrogate_scl_2.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines_fam.f90 -o funcpajsplines_fam.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines_intcens.f90 -o funcpajsplines_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines_log.f90 -o funcpajsplines_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines_logIndiv.f90 -o funcpajsplines_logIndiv.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines_surrogate_scl_1.f90 -o funcpajsplines_surrogate_scl_1.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajsplines_surrogate_scl_2.f90 -o funcpajsplines_surrogate_scl_2.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajweib.f90 -o funcpajweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajweib_fam.f90 -o funcpajweib_fam.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajweib_intcens.f90 -o funcpajweib_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpajweib_log.f90 -o funcpajweib_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpalongi_uni.f90 -o funcpalongi_uni.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpancpm.f90 -o funcpancpm.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpansplines.f90 -o funcpansplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpanweib.f90 -o funcpanweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpas_tps.f90 -o funcpas_tps.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpascpm.f90 -o funcpascpm.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpascpm_intcens.f90 -o funcpascpm_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpascpm_log.f90 -o funcpascpm_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasgenadditif_alternatif.f90 -o funcpasgenadditif_alternatif.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasgenadditif_pen.f90 -o funcpasgenadditif_pen.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasgenadditif_tps.f90 -o funcpasgenadditif_tps.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasgenadditifalternatif_tps.f90 -o funcpasgenadditifalternatif_tps.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasgenloglogistic.f90 -o funcpasgenloglogistic.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasgenlognormal.f90 -o funcpasgenlognormal.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasgenweib.f90 -o funcpasgenweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpassplines.f90 -o funcpassplines.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpassplines_intcens.f90 -o funcpassplines_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpassplines_log.f90 -o funcpassplines_log.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasweib.f90 -o funcpasweib.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasweib_intcens.f90 -o funcpasweib_intcens.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c funcpasweib_log.f90 -o funcpasweib_log.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c joint.f90 -o joint.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c natural_effects.f90 -o natural_effects.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c jointSurrogate.f90 -o jointSurrogate.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c joint_competing.f90 -o joint_competing.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c joint_longi.f90 -o joint_longi.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c joint_longi_nl.f90 -o joint_longi_nl.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c joint_surrogate.f90 -o joint_surrogate.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c jointgen.f90 -o jointgen.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c jointsurrokendall.f90 -o jointsurrokendall.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c longi_uni_nl.f90 -o longi_uni_nl.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c multiveJoint.f90 -o multiveJoint.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nested.f90 -o nested.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c prediction.f90 -o prediction.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c prediction_Recurr_Sha.f90 -o prediction_Recurr_Sha.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c prediction_biv.f90 -o prediction_biv.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c prediction_sha_logn.f90 -o prediction_sha_logn.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c prediction_tri.f90 -o prediction_tri.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c prediction_tri_nl.f90 -o prediction_tri_nl.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c predictionfam.f90 -o predictionfam.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c risque.f90 -o risque.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c somme.f90 -o somme.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c surrosim.f90 -o surrosim.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c survival.f90 -o survival.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c test.f90 -o test.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o frailtypack.so Adonnees.o AparamMultive.o Aparameters.o Integrale_mult_scl.o Integrant_scl.o Pour_Adaptative.o aGhermite.o aaOptim.o aaOptim_New_scl.o aaOptim_New_scl2.o aaOptim_SCL_0.o aaOptimres.o aaUseFunction.o aaUseFunctionG.o aamarq98o.o additive.o afuncpasres.o ahrmsym.o aresidusMartingale.o autres_fonctions.o distance.o epoce.o epoce_log.o epoce_long.o epoce_long_nl.o fortran_random.o frailtypack.o frailtypackgen.o funcpaG_tps.o funcpaGcpm.o funcpaGcpm_intcens.o funcpaGcpm_log.o funcpaGsplines.o funcpaGsplines_intcens.o funcpaGsplines_log.o funcpaGweib.o funcpaGweib_intcens.o funcpaGweib_log.o funcpaMultivCpm.o funcpaMultivSplines.o funcpaMultivWeib.o funcpa_adaptative.o funcpa_laplace.o funcpaacpm.o funcpaasplines.o funcpaaweib.o funcpaj_tps.o funcpajcompetingsplines.o funcpajcompetingweib.o funcpajcpm.o funcpajcpm_log.o funcpajgen_tps.o funcpajgeneral.o funcpajgenparam.o funcpajlongisplines.o funcpajlongisplines2.o funcpajlongisplines_nl.o funcpajlongiweib.o funcpajlongiweib_nl.o funcpajsplines.o funcpajsplinesIndiv.o funcpajsplines_copule_surrogate_scl_2.o funcpajsplines_fam.o funcpajsplines_intcens.o funcpajsplines_log.o funcpajsplines_logIndiv.o funcpajsplines_surrogate_scl_1.o funcpajsplines_surrogate_scl_2.o funcpajweib.o funcpajweib_fam.o funcpajweib_intcens.o funcpajweib_log.o funcpalongi_uni.o funcpancpm.o funcpansplines.o funcpanweib.o funcpas_tps.o funcpascpm.o funcpascpm_intcens.o funcpascpm_log.o funcpasgenadditif_alternatif.o funcpasgenadditif_pen.o funcpasgenadditif_tps.o funcpasgenadditifalternatif_tps.o funcpasgenloglogistic.o funcpasgenlognormal.o funcpasgenweib.o funcpassplines.o funcpassplines_intcens.o funcpassplines_log.o funcpasweib.o funcpasweib_intcens.o funcpasweib_log.o init.o joint.o jointSurrogate.o joint_competing.o joint_longi.o joint_longi_nl.o joint_surrogate.o jointgen.o jointsurrokendall.o longi_uni_nl.o multiveJoint.o natural_effects.o nested.o prediction.o prediction_Recurr_Sha.o prediction_biv.o prediction_sha_logn.o prediction_tri.o prediction_tri_nl.o predictionfam.o risque.o somme.o surrosim.o survival.o test.o -fopenmp -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXjJIu1/R.INSTALL2a297d6b152334/frailtypack/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-frailtypack/00new/frailtypack/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context Note: ... may be used in an incorrect context ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frailtypack) checking frailtypack_3.6.3.tar.gz ... checking PDXpower_1.0.3.tar.gz ... checking icensBKL_1.5.tar.gz ... checking INLAjoint_24.3.25.tar.gz ... Depends: Package: frailtypack Depends: R (>= 3.5.0), survival, boot, MASS, survC1, doBy Imports: statmod, nlme, shiny, rootSolve, splines Timings: user system elapsed frailtypack 277.58 16.925 300.335 Results: Check status summary: OK Source packages 1 Reverse depends 3 Check results summary: frailtypack ... OK rdepends_icensBKL ... OK rdepends_INLAjoint ... OK rdepends_PDXpower ... OK