* using log directory ‘/srv/hornik/tmp/CRAN/frailtypack.Rcheck’
* using R Under development (unstable) (2023-11-22 r85609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.5 (1)
    Debian flang-new version 17.0.5 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘frailtypack/DESCRIPTION’ ... OK
* this is package ‘frailtypack’ version ‘3.5.1’
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Virginie Rondeau <virginie.rondeau@u-bordeaux.fr>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Trivariate (35:6)
  semicontinuous (38:73)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-09-11 as issues were not corrected
    in time.

  Use of Fortran RANDOM_NUMBER.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘frailtypack’ can be installed ... [171s/122s] OK
* used C compiler: ‘Debian clang version 17.0.5 (1)’
* used Fortran compiler: ‘Debian flang-new version 17.0.5 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [56s/56s] OK
* checking Rd files ... [1s/1s] NOTE
checkRd: (-1) jointSurroPenal.Rd:149: Lost braces
   149 | eg: code{1/365} aims to convert days to years ".}
       |         ^
checkRd: (-1) prediction.Rd:226: Lost braces
   226 | u\out{<sub>i</sub>}\out{<sup>J</sup>} replaced by \eqn{exp}(J\\eqn{eta}\out{<sub>i</sub>}) and \eqn{g(\eta)}
       |                                                                   ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: ‘timereg’
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [6s/6s] OK
* checking HTML version of manual ... [4s/4s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs