* using log directory ‘/srv/hornik/tmp/CRAN/fqar.Rcheck’
* using R Under development (unstable) (2024-04-08 r86370)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘fqar/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fqar’ version ‘0.5.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/64s] NOTE
Maintainer: ‘Andrew Gard <agard@lakeforest.edu>’

Found the following (possibly) invalid URLs:
  URL: https://universalfqa.org/
    From: man/assessment_cooccurrences.Rd
          man/assessment_cooccurrences_summary.Rd
          man/assessment_glance.Rd
          man/assessment_inventory.Rd
          man/assessment_list_glance.Rd
          man/assessment_list_inventory.Rd
          man/chicago.Rd
          man/database_glance.Rd
          man/database_inventory.Rd
          man/download_assessment.Rd
          man/download_assessment_list.Rd
          man/download_database.Rd
          man/download_transect.Rd
          man/download_transect_list.Rd
          man/index_fqa_assessments.Rd
          man/index_fqa_databases.Rd
          man/index_fqa_transects.Rd
          man/missouri.Rd
          man/species_acronym.Rd
          man/species_c.Rd
          man/species_common_name.Rd
          man/species_nativity.Rd
          man/species_phys.Rd
          man/species_w.Rd
          man/transect_glance.Rd
          man/transect_inventory.Rd
          man/transect_list_glance.Rd
          man/transect_list_inventory.Rd
          man/transect_phys.Rd
          man/transect_subplot_inventories.Rd
          inst/doc/fqar.html
          NEWS.md
    Status: Error
    Message: Connection timed out after 60001 milliseconds
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fqar’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/28s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/68s] OK
  Running ‘testthat.R’ [4s/68s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE