# FL note: see the fm_segm documentation for the idx and is.bnd arguments # Further note: fm_segm has two ways of specifying the index; # as a sequence, or as a two-column matrix. But it is always stored as a two column matrix, # with no general guarantee that one line connects to the one in the next row. # This makes conversion to sp and sf polygons more difficult, which is why there # isn't a general fm_as_sp.inla.mesh.segment method, but fm_as_sfc() has partial support. test_that("Conversion from matrix to inla.mesh.segment", { ## sfc_POINT ## # compare inla.mesh.segment with matrix input # to fm_as_inla_mesh_segment with sf point input # matrix version loc.bnd <- matrix(c( 0, 0, 1, 0, 1, 1, 0, 1 ), 4, 2, byrow = TRUE) segm.bnd <- fm_segm( loc.bnd, is.bnd = TRUE, crs = fm_CRS() ) segm.bnd.sp <- fm_as_segm(loc.bnd, is.bnd = TRUE, closed = TRUE) expect_identical(segm.bnd.sp, segm.bnd) }) test_that("Conversion from Lines to inla.mesh.segment", { ## sp::Lines ## pts1 <- rbind(c(0, 3), c(0, 4), c(1, 5), c(2, 5)) pts2 <- rbind(c(1, 1), c(0, 0), c(0, -1), c(-2, -2)) seg1 <- fm_segm( loc = pts1, idx = seq_len(nrow(pts1)), is.bnd = FALSE, crs = fm_CRS() ) seg2 <- fm_segm( loc = pts2, idx = seq_len(nrow(pts2)), is.bnd = FALSE, crs = fm_CRS() ) seg <- fm_segm_join(list(seg1, seg2), grp = seq_len(2) ) expect_identical(seg$grp, rep(1:2, each = 3)) seg_sp <- fm_as_segm( sp::Lines(list(sp::Line(pts1), sp::Line(pts2)), ID = "A"), grp = 1:2 ) expect_identical(seg_sp, seg) }) test_that("Conversion from Polygons to inla.mesh.segment", { extract_sequences <- function(seg) { sequences <- list() unused_edges <- rep(TRUE, nrow(seg$idx)) i <- integer(0) while (any(unused_edges)) { edge <- min(which(unused_edges)) i <- seg$idx[edge, 1] while (length(edge) > 0) { edge <- min(edge) i <- c(i, seg$idx[edge, 2]) unused_edges[edge] <- FALSE edge <- which(unused_edges & (seg$idx[, 1] == i[length(i)])) } sequences[[length(sequences) + 1]] <- i i <- integer(0) } sequences } ## Polygon ## pts1 <- rbind(c(0, 0), c(1, 0), c(1, 1), c(0, 1), c(0, 0)) # solid pts2 <- rbind(c(0, 0), c(0, 1), c(1, 1), c(1, 0), c(0, 0)) # hole seg1 <- fm_segm( loc = pts1[1:4, , drop = FALSE], is.bnd = TRUE, crs = fm_CRS() ) seg2 <- fm_segm( loc = pts2[1:4, , drop = FALSE], is.bnd = TRUE, crs = fm_CRS() ) poly1 <- sp::Polygon(pts1[5:1, ], hole = FALSE) poly2 <- sp::Polygon(pts2[5:1, ], hole = TRUE) seg1_sp <- fm_as_segm(poly1) seg2_sp <- fm_as_segm(poly2) expect_identical(seg1_sp$loc[seg1_sp$idx[, 1], ], seg1$loc[seg1$idx[, 1], ]) expect_identical(seg2_sp$loc[seg2_sp$idx[, 1], ], seg2$loc[seg2$idx[, 1], ]) seq_seg1 <- extract_sequences(seg1) seq_seg1_sp <- extract_sequences(seg1_sp) expect_identical( seg1_sp$loc[seq_seg1_sp[[1]], ], seg1$loc[seq_seg1[[1]], ] ) seq_seg2 <- extract_sequences(seg2) seq_seg2_sp <- extract_sequences(seg2_sp) expect_identical( seg2_sp$loc[seq_seg2_sp[[1]], ], seg2$loc[seq_seg2[[1]], ] ) ## Polygons ## # Winding order and hold status is messy for sp. # Should focus on the sf conversions instead. if (FALSE) { pts1 <- rbind(c(0, 3), c(0, 4), c(1, 5), c(2, 5), c(0, 3)) pts2 <- rbind(c(1, 2), c(0, 0), c(0, -1), c(-2, -2), c(1, 2)) seg1 <- fm_segm( loc = pts1[1:4, , drop = FALSE], is.bnd = TRUE, crs = fm_CRS() ) seg2 <- fm_segm( loc = pts2[1:4, , drop = FALSE], is.bnd = TRUE, crs = fm_CRS() ) seg <- fm_segm_join(list(seg1, seg2), grp = seq_len(2) ) expect_identical(seg$grp, rep(1:2, each = 4)) poly_sp <- sp::Polygons(list( sp::Polygon(pts1, hole = TRUE), sp::Polygon(pts2, hole = FALSE) ), ID = "A") seg_sp <- fm_as_segm( poly_sp, grp = 1:2 ) seq_seg <- extract_sequences(seg) seq_seg_sp <- extract_sequences(seg_sp) # Matches: expect_identical( seg_sp$loc[seq_seg_sp[[1]], ], seg$loc[seq_seg[[1]], ] ) # Doesn't match: expect_identical( seg_sp$loc[seq_seg_sp[[2]], ], seg$loc[seq_seg[[2]], ] ) } })