test_that("Discrete integration", { domain <- 2:5 samplers <- 3:7 ips_ <- data.frame(x = 3:5, weight = rep(1, 3), .block = 1L:3L) ips <- fm_int(domain, samplers = samplers) expect_identical(ips, ips_) domain <- as.character(domain) samplers <- as.character(samplers) ips <- fm_int(domain, samplers) ips_$x <- as.character(ips_$x) expect_identical(ips, ips_) domain <- factor(domain, levels = domain) samplers <- factor(samplers, levels = samplers) ips <- fm_int(domain, samplers) ips_$x <- factor(ips_$x, levels = domain) expect_identical(ips, ips_) }) test_that("Continuous integration", { domain <- fm_mesh_1d(2:5) samplers <- c(3, 5) ips_ <- data.frame( x = c(3:5, 3.5, 4.5), weight = c(1 / 6, 1 / 3, 1 / 6, 2 / 3, 2 / 3), .block = 1L ) ips_ <- ips_[order(ips_$x), ] ips <- fm_int(domain, samplers = samplers) ips <- ips[order(ips$x), ] expect_identical(ips, ips_) # Check blockwise integration samplers <- rbind(c(3, 5), c(2, 4.5)) ips <- fm_int(domain, samplers = samplers) sums <- as.vector(by(ips$weight, ips$.block, sum)) expect_equal(sums, c(2, 2.5)) # degree = 2 domain <- fm_mesh_1d(2:5, degree = 2) samplers <- c(3, 5) ips_ <- data.frame( x = c(3:5, 3.5, 4.5), weight = c(1 / 6, 1 / 3, 1 / 6, 2 / 3, 2 / 3), .block = 1L ) ips_ <- ips_[order(ips_$x), ] ips <- fm_int(domain, samplers = samplers) ips <- ips[order(ips$x), ] expect_identical(ips, ips_) # Check blockwise integration samplers <- rbind(c(3, 5), c(2, 4.5)) ips <- fm_int(domain, samplers = samplers) sums <- as.vector(by(ips$weight, ips$.block, sum)) expect_equal(sums, c(2, 2.5)) }) test_that("Tensor space integration", { mesh_time <- fm_mesh_1d(1:5) mesh_space <- fm_mesh_1d(c(0, 5, 10)) domain <- list(space = mesh_space, time = mesh_time) samplers1 <- tibble::tibble( time = rbind(c(1, 3), c(2, 4), c(3, 5)), space = rbind(c(0, 10), c(0, 5), c(5, 10)), weight = c(1, 10, 100) ) ips1 <- fm_int(domain, samplers1) samplers2 <- tibble::tibble( space = samplers1$space, time = samplers1$time, weight = samplers1$weight ) ips2 <- fm_int(domain, samplers2) expect_equal(sort(names(ips1)), sort(names(ips2))) expect_equal( dplyr::arrange(ips1, .block, time, space), dplyr::arrange(ips2[names(ips1)], .block, time, space) ) }) # From old ipoints tests test_that("conversion of SpatialPolygon to integration points when domain is defined via a mesh", { ips <- fm_int(fmexample$mesh, samplers = fmexample$boundary_sp[[1]]) expect_s4_class(ips, "SpatialPointsDataFrame") expect_equal( sort(colnames(as.data.frame(ips))), sort(c("weight", ".block", "x", "y", "z")) ) expect_equal(sum(ips$weight), 18.33349, tolerance = lowtol) }) test_that("conversion of whole 2D mesh to integration points", { ips <- fm_int(fmexample$mesh, format = "sf") expect_s3_class(ips, "sf") expect_equal(colnames(ips), c("weight", ".block", "geometry")) expect_equal(sum(ips$weight), 64.58135, tolerance = lowtol) ips <- fm_int(fmexample$mesh, format = "sp") expect_s4_class(ips, "SpatialPointsDataFrame") expect_equal(colnames(as.data.frame(ips)), c("weight", ".block", "x", "y", "z")) expect_equal(sum(ips$weight), 64.58135, tolerance = lowtol) }) test_that("Polygon integration with holes", { plyA <- sp::SpatialPolygons(list( sp::Polygons( list( sp::Polygon(matrix(c(0, 3, 3, 0, 0, 0, 3, 3) - 1, 4, 2), hole = FALSE ), sp::Polygon(matrix(c(1, 2, 2, 1, 1, 1, 2, 2) - 1, 4, 2), hole = TRUE ) ), ID = "A" ) )) bndA <- fm_as_segm(plyA) m <- fmexample$mesh ipA1 <- fm_int(m, plyA, int.args = list( method = "direct", nsub2 = 1 )) ipA2 <- fm_int(m, plyA, int.args = list( method = "stable", nsub2 = 1 )) ipA3 <- fm_int(m, plyA, int.args = list(method = "direct")) ipA4 <- fm_int(m, plyA, int.args = list(method = "stable")) ipA1$test <- "A1" ipA2$test <- "A2" ipA3$test <- "A3" ipA4$test <- "A4" # if (FALSE) { # require("ggplot2") # pl <- ggplot2::ggplot() + # geom_fm(data = m, alpha = 0) + # inlabru::gg(plyA) # pl # # pl + # inlabru::gg(ipA1, mapping = aes(col = weight, size = weight)) + # inlabru::gg(ipA2, mapping = aes(col = weight, size = weight)) + # inlabru::gg(ipA3, mapping = aes(col = weight, size = weight)) + # inlabru::gg(ipA4, mapping = aes(col = weight, size = weight)) + # ggplot2::facet_wrap(vars(test)) # } # sf::st_area(sf::st_as_sf(plyA)) # [1] 8.006112 expect_equal(sum(ipA1$weight), 7.914124, tolerance = lowtol) expect_equal(sum(ipA2$weight), 7.914124, tolerance = lowtol) expect_equal(sum(ipA3$weight), 8.001529, tolerance = lowtol) expect_equal(sum(ipA4$weight), 8.001529, tolerance = lowtol) }) test_that("Integration line splitting", { mesh <- fmexample$mesh segm <- fm_segm( loc = rbind(c(-1, 0), c(-1, 1), c(1, 0), c(1, 1)), idx = rbind(c(1, 2), c(3, 4)), is.bnd = FALSE ) expect_error( object = { sl <- fm_split_lines(mesh, segm) }, NA ) # Check inlabru issue #63 (problem for single line input), fixed segm <- fm_segm( loc = rbind(c(-1, 0), c(1, 0)), idx = 1:2, is.bnd = FALSE ) expect_error( object = { sl <- fm_split_lines(mesh, segm) }, NA ) # Check if empty input is ok segm <- fm_segm( loc = NULL, idx = integer(0), is.bnd = FALSE ) expect_error( object = { sl <- fm_split_lines(mesh, segm) }, NA ) }) # Additional mesh integration tests test_that("flat mesh integration", { mesh <- fmexample$mesh ips0 <- fm_int(mesh, int.args = list(nsub2 = 0)) ips9 <- fm_int(mesh, int.args = list(nsub2 = 9)) expect_equal(sum(ips0$weight), sum(ips9$weight)) }) test_that("sphere and globe mesh integration", { skip_on_cran() mesh <- fm_rcdt_2d_inla(globe = 1) ips0 <- fm_int(mesh, int.args = list(nsub2 = 0)) ips9 <- fm_int(mesh, int.args = list(nsub2 = 9)) expect_equal(sum(ips0$weight), 4 * pi) expect_equal(sum(ips9$weight), 4 * pi) mesh_ <- mesh mesh_$loc <- mesh_$loc * 1000 ips0_ <- fm_int(mesh_, int.args = list(nsub2 = 0)) ips9_ <- fm_int(mesh_, int.args = list(nsub2 = 9)) expect_equal(sum(ips0_$weight), 4 * pi * 1e6) expect_equal(sum(ips9_$weight), 4 * pi * 1e6) suppressWarnings( mesh_2 <- fm_rcdt_2d_inla(globe = 1, crs = fm_CRS("globe")) ) ips0_2 <- fm_int(mesh_2, int.args = list(nsub2 = 0)) ips9_2 <- fm_int(mesh_2, int.args = list(nsub2 = 9)) expect_equal(sum(ips0_2$weight), 4 * pi * 6370.997^2) expect_equal(sum(ips9_2$weight), 4 * pi * 6370.997^2) ips0_3 <- fm_int(mesh_2, int.args = list(nsub2 = 0)) ips9_3 <- fm_int(mesh_2, int.args = list(nsub2 = 9)) expect_equal(sum(ips0_3$weight), 4 * pi * 6370.997^2) expect_equal(sum(ips9_3$weight), 4 * pi * 6370.997^2) }) test_that("flat SpatialPolygons integration", { mesh <- fmexample$mesh poly <- sp::SpatialPolygons(list(sp::Polygons(list(sp::Polygon(rbind( c(-1, -1), c(-1, 1), c(1, 1), c(1, -1) ))), ID = "A"))) poly <- sf::st_as_sf(poly) ips0 <- fm_int(mesh, samplers = poly, int.args = list(nsub2 = 0, method = "direct")) ips1 <- fm_int(mesh, samplers = poly, int.args = list(nsub2 = 1, method = "direct")) ips9 <- fm_int(mesh, samplers = poly, int.args = list(nsub2 = 9, method = "direct")) ips19 <- fm_int(mesh, samplers = poly, int.args = list(nsub2 = 19, method = "direct")) # require("ggplot2") # ggplot() + # geom_fm(data = mesh) + # geom_sf(aes(size = weight, colour = nsub2), data = cbind(ips0, nsub2 = "0")) + # geom_sf(aes(size = weight, colour = nsub2), data = cbind(ips1, nsub2 = "1")) + # geom_sf(aes(size = weight, colour = nsub2), data = cbind(ips9, nsub2 = "9")) + # geom_sf(aes(size = weight, colour = nsub2), data = cbind(ips19, nsub2 = "19")) + # facet_wrap(~nsub2) expect_equal(sum(ips0$weight), 4.055089, tolerance = midtol) expect_equal(sum(ips1$weight), 4.02438, tolerance = midtol) expect_equal(sum(ips9$weight), 4.00746, tolerance = midtol) expect_equal(sum(ips19$weight), 3.999283, tolerance = midtol) }) test_that("globe polygon integration", { skip_on_cran() suppressWarnings( mesh <- fm_rcdt_2d_inla(globe = 1, crs = fm_crs("globe")) ) poly <- sp::SpatialPolygons( list(sp::Polygons(list(sp::Polygon(rbind( c(-45, -45), c(-45, 45), c(45, 45), c(45, -45) ))), ID = "A")), proj4string = fm_CRS("longlat_globe") ) ips1 <- fm_int(mesh, samplers = poly, int.args = list(nsub = 2)) expect_equal( nrow(ips1), 9 ) })