test_that("plot for exponential fit", { slopes0 <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "exp_zhao18" )) slopes0_flag <- suppressMessages(flux_quality( slopes0, conc )) expect_snapshot( suppressMessages( # because the progress bar is messing with check() flux_plot(slopes0_flag, conc, datetime, f_plotname = "test_exp_plot", print_plot = FALSE, output = "pdfpages" ) ) ) # the plots are quite heavy so we do not keep them unlink("f_quality_plots/", recursive = TRUE, force = TRUE) }) test_that("plot for linear fit", { slopes30lin_flag <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "linear", end_cut = 30 )) |> flux_quality( conc ) expect_snapshot( vdiffr::expect_doppelganger( "plot for linear fit", flux_plot(slopes30lin_flag, conc, datetime) ) ) }) test_that("plot for linear fit with jpg extension works", { slopes30lin_flag <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "linear", end_cut = 30 )) |> flux_quality( conc ) expect_snapshot( flux_plot(slopes30lin_flag, conc, datetime, f_plotname = "test_lin_plot", print_plot = FALSE, output = "ggsave", ggsave_args = list(device = "jpg") ) ) # the plots are quite heavy so we do not keep them unlink("f_quality_plots/", recursive = TRUE, force = TRUE) }) test_that("ggssave and print", { slopes30lin_flag <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "linear", end_cut = 30 )) |> flux_quality( conc ) expect_snapshot( vdiffr::expect_doppelganger( "ggssave and print", flux_plot(slopes30lin_flag, conc, datetime, f_plotname = "test_lin_plot", print_plot = TRUE, output = "ggsave", ggsave_args = list(device = "jpg") ) ) ) # the plots are quite heavy so we do not keep them unlink("f_quality_plots/", recursive = TRUE, force = TRUE) }) test_that("plot can be exported as an object", { slopes30lin_flag <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "linear", end_cut = 30 )) |> flux_quality( conc ) plot_object <- flux_plot(slopes30lin_flag, conc, datetime) vdiffr::expect_doppelganger("plot as an object", plot_object) }) test_that("plot for exp_tz fit", { expect_snapshot( vdiffr::expect_doppelganger( "plot for exp_tz fit", flux_fitting( co2_conc, conc, datetime, fit_type = "exp_tz", end_cut = 60, t_zero = 20 ) |> flux_quality(conc) |> flux_plot(conc, datetime) ) ) }) test_that("plot for exp_tz fit with mid missing data", { expect_snapshot( vdiffr::expect_doppelganger( "plot for exp_tz fit with mid missing data", flux_fitting( co2_conc_mid_missing, conc, datetime, fit_type = "exp_tz", end_cut = 60, t_zero = 20 ) |> flux_quality(conc) |> flux_plot(conc, datetime) ) ) }) test_that("plot for exp_zhao18 fit with mid missing data", { expect_snapshot( vdiffr::expect_doppelganger( "plot for exp_zhao18 fit with mid missing data", flux_fitting( co2_conc_mid_missing, conc, datetime, fit_type = "exp_zhao18", end_cut = 60, t_zero = 20 ) |> flux_quality(conc) |> flux_plot(conc, datetime) ) ) }) test_that("plot for quadratic fit with mid missing data", { expect_snapshot( vdiffr::expect_doppelganger( "plot for quadratic fit with mid missing data", flux_fitting( co2_conc_mid_missing, conc, datetime, fit_type = "quadratic", end_cut = 60, t_zero = 20 ) |> flux_quality(conc) |> flux_plot(conc, datetime) ) ) }) test_that("plot for exp_hm fit", { expect_snapshot( vdiffr::expect_doppelganger( "plot for exp_hm fit", flux_fitting( co2_conc, conc, datetime, fit_type = "exp_hm", end_cut = 60, t_zero = 20 ) |> flux_quality(conc) |> flux_plot(conc, datetime) ) ) }) test_that("plot for kappamax fit", { expect_snapshot( vdiffr::expect_doppelganger( "plot for kappamax fit", flux_fitting( co2_conc, conc, datetime, fit_type = "exp_hm", end_cut = 30, t_zero = 10 ) |> flux_quality( conc, f_pvalue = f_pvalue_lm, f_rsquared = f_rsquared_lm, kappamax = TRUE ) |> flux_plot(conc, datetime) ) ) }) test_that("plot with custom facet id", { slopes30lin_flag <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "linear", end_cut = 30 )) |> flux_quality( conc ) expect_snapshot( vdiffr::expect_doppelganger( "plot with custom facet id", flux_plot( slopes30lin_flag, conc, datetime, f_facetid = c("type", "turfID") ) ) ) }) test_that("error with custom facet id not unique", { slopes30lin_flag <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "linear", end_cut = 30 )) |> flux_quality( conc ) expect_error( flux_plot( slopes30lin_flag, conc, datetime, f_facetid = "turfID" ), "Please use a f_facetid that is unique for each measurement" ) }) test_that("longpdf works", { slopes0 <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "exp_zhao18" )) slopes0_flag <- suppressMessages(flux_quality( slopes0, conc )) expect_snapshot( flux_plot(slopes0_flag, conc, datetime, f_plotname = "test_exp_plot", print_plot = FALSE, output = "longpdf" ) ) # the plots are quite heavy so we do not keep them unlink("f_quality_plots/", recursive = TRUE, force = TRUE) }) test_that("longpdf and print", { slopes0 <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "exp_zhao18" )) slopes0_flag <- suppressMessages(flux_quality( slopes0, conc )) expect_snapshot( vdiffr::expect_doppelganger( "longpdf and print", flux_plot(slopes0_flag, conc, datetime, f_plotname = "test_exp_plot", print_plot = TRUE, output = "longpdf" ) ) ) # the plots are quite heavy so we do not keep them unlink("f_quality_plots/", recursive = TRUE, force = TRUE) }) test_that("argument error", { slopes0 <- suppressWarnings(flux_fitting( co2_conc, conc, datetime, fit_type = "exp_zhao18" )) slopes0_flag <- suppressMessages(flux_quality( slopes0, conc )) expect_error( flux_plot(slopes0_flag, conc, datetime, f_plotname = "test_exp_plot", print_plot = FALSE, output = "pdfpages", y_text_position = "a bit higher" ), "Please correct the arguments" ) } )