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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(fluxfixer) > > test_check("fluxfixer") --- dTmax calculation by the SP method started --- dTmax calculation by the SP method finished --- dTmax calculation by the PD method started | | | 0% | |== | 3% | |===== | 7% | |======= | 10% | |========= | 13% | |============ | 17% | |============== | 20% | |================ | 23% | |=================== | 27% | |===================== | 30% | |======================= | 33% | |========================== | 37% | |============================ | 40% | |============================== | 43% | |================================= | 47% | 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|==================================================================== | 97% | |======================================================================| 100% --- dTmax calculation by the PD and ED methods finished --- dTmax calculation by the MW and DR methods started | | | 0% | |== | 3% | |===== | 7% | |======= | 10% | |========= | 13% | |============ | 17% | |============== | 20% | |================ | 23% | |=================== | 27% | |===================== | 30% | |======================= | 33% | |========================== | 37% | |============================ | 40% | |============================== | 43% | |================================= | 47% | |=================================== | 50% | |===================================== | 53% | |======================================== | 57% | |========================================== | 60% | |============================================ | 63% | |=============================================== | 67% | 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Hyperparameter set: [2, 5, 0.1] --- MSE: 0.1152197067, Hyperparameter set: [3, 5, 0.1] Random forest outlier detection started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.1163958851, Hyperparameter set: [2, 5, 0.1] --- MSE: 0.1158768135, Hyperparameter set: [3, 5, 0.1] --- Optimal hyperparameter set: [3, 5, 0.1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest outlier detection finished Random forest-based gap-filling started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.1172074838, Hyperparameter set: [2, 5, 1] --- MSE: 0.1180219748, Hyperparameter set: [3, 5, 1] --- Optimal hyperparameter set: [2, 5, 1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest-based gap-filling finished Z-score outlier detection started --- 5 Z-score outliers were detected --- 1 Z-score outlier was detected --- No Z-score outlier was detected Z-score outlier detection finished Time series retrieval started --- Signal damping correction was not applied --- Detrending was not applied Time series retrieval finished *** Fluxfixer started running *** Manual error value removal was not applied Absolute limits test finished Short-term drift correction finished High frequency noise filtering was not applied Z-score outlier detection started --- 4 Z-score outliers were detected --- No Z-score outlier was detected Z-score outlier detection finished Random forest outlier detection started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.0739554514, Hyperparameter set: [2, 5, 0.1] --- MSE: 0.0726109857, Hyperparameter set: [3, 5, 0.1] --- MSE: 0.0722772273, Hyperparameter set: [4, 5, 0.1] --- MSE: 0.0723189352, Hyperparameter set: [5, 5, 0.1] --- MSE: 0.0725645986, Hyperparameter set: [6, 5, 0.1] --- Optimal hyperparameter set: [4, 5, 0.1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest outlier detection finished Reference value definition started --- Reference average of target time series: 11.4795696128495 --- Reference standard deviation of target time series: 1.6643079953541 Reference value definition finished Random forest-based gap-filling started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.031877748, Hyperparameter set: [2, 5, 1] --- MSE: 0.0319078118, Hyperparameter set: [3, 5, 1] --- MSE: 0.0324695933, Hyperparameter set: [4, 5, 1] --- MSE: 0.0325601249, Hyperparameter set: [5, 5, 1] --- MSE: 0.0330977558, Hyperparameter set: [6, 5, 1] --- Optimal hyperparameter set: [2, 5, 1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest-based gap-filling finished Time series retrieval started --- Signal damping correction was not applied --- Detrending finished Time series retrieval finished Quality-control flag determination finished Zero-flow condition estimation started --- dTmax calculation by the SP method started --- dTmax calculation by the SP method finished --- dTmax time series aggregation started --- dTmax time series aggregation finished Zero-flow condition estimation finished Fd calculation process started --- Heartwood correction was not applied --- Fd calculation by the SP method finished Fd calculation process finished *** Fluxfixer finished running successfully *** [ FAIL 0 | WARN 0 | SKIP 0 | PASS 49 ] > > proc.time() user system elapsed 149.43 9.12 104.76