R Under development (unstable) (2024-07-10 r86888 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require(fitdistrplus) Loading required package: fitdistrplus Loading required package: MASS Loading required package: survival > > > #### analytical example for dfapprox #### > if(FALSE) + { + f <- function(x) + sin(x[1]) + cos(x[2]) + fprime <- function(x, i) + { + if(i == 1) + return(cos(x[1])) + -sin(x[2]) + } + + x <- c(pi/4, pi/4) + fitdistrplus:::dfapprox(f, 1, x) - fprime(x, 1) + + + dfapprox_1 <- function(x) + sapply(x, function(y) fitdistrplus:::dfapprox(f, 1, y)) + + f <- function(x) + sin(x) + fprime <- function(x) + cos(x) + + x <- seq(0, pi, pi/10) + dfapprox_1(x) - fprime(x) + + curve(dfapprox_1(x), from=-pi/2, to=pi/2) + curve(fprime(x), add=TRUE, col="green") + + } > > #### Gamma example #### > if(FALSE) + { + memp <- function(x, order) mean(x^order) + + #true value, see Ibragimov & Has'minskii (1981) + J <- function(alpha, beta) + { + cbind(c(1/beta, (1+2*alpha)/beta^2), + c(-alpha/beta^2, -2*alpha*(alpha+1)/beta^3)) + } + + J(3, 1/2) + fitdistrplus:::mme.Jhat(c(3, 1/2), NULL, order=1:2, mgamma) + + + diff <- function(x) + max(abs(J(x[1], x[2]) - fitdistrplus:::mme.Jhat(x, NULL, order=1:2, mgamma))) + + x <- seq(1/4, 3/2, by=1/4) + + #shape param + sapply(x, function(x) diff(c(x, 1/2))) + #rate param + sapply(x, function(x) diff(c(1/2, x))) + + + #true value, see Ibragimov & Has'minskii (1981) + A <- function(alpha, beta) + { + cbind(c(alpha/beta^2, 2*alpha*(alpha+1)/beta^3), + c(2*alpha*(alpha+1)/beta^3, alpha*(4*alpha+6)*(alpha+1)/beta^4)) + } + + n <- 1e6 + x <- rgamma(n, 3, 1/2) + A(3, 1/2) + fitdistrplus:::mme.Ahat(c(3, 1/2), fix.arg=NULL, order=1:2, obs=x, mdistnam=mgamma, memp, weights=NULL) + + + vcovgamma <- function(alpha, beta) + { + Jinv <- solve(J(alpha, beta)) + Jinv %*% A(alpha, beta) %*% t(Jinv) + } + + #two param, no fix + fitdistrplus:::mme.vcov(c(3, 1/2), fix.arg=NULL, order=1:2, obs=x, mdistnam=mgamma, memp, weights=NULL) + vcovgamma(3, 1/2) + + #one param, one fix + fitdistrplus:::mme.vcov(3, fix.arg=list(rate=1/2), order=1, obs=x, mdistnam=mgamma, memp, weights=NULL) + + #cancel out a rown and a line in the inverse matrix + Jinv <- 1/J(3, 1/2) + Jinv[2,1] <- Jinv[, 2] <- 0 + Jinv %*% A(3, 1/2) %*% t(Jinv) + + } > > > > proc.time() user system elapsed 1.64 0.18 1.81