* using log directory 'd:/RCompile/CRANincoming/R-devel/fioRa.Rcheck'
* using R Under development (unstable) (2025-10-27 r88972 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'fioRa/DESCRIPTION' ... OK
* this is package 'fioRa' version '0.3.3'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Jan Lisec <jan.lisec@bam.de>'

New submission

Possibly misspelled words in DESCRIPTION:
  FIORA (2:42, 7:56)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fioRa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [19s] ERROR
  Running 'spelling.R'
  Running 'testthat.R' [19s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fioRa)
  > 
  > test_check("fioRa")
  Loading required package: shiny
  [ FAIL 7 | WARN 2 | SKIP 1 | PASS 26 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-golem-recommended.R:81:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-run_script.R:10:3'): fioRa `run_script` function works with default parameters ──
  tmp[[1]] has length 1, not length 9.
  ── Failure ('test-run_script.R:11:3'): fioRa `run_script` function works with default parameters ──
  "spec" %in% names(tmp[[1]]) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Error ('test-run_script.R:12:3'): fioRa `run_script` function works with default parameters ──
  <subscriptOutOfBoundsError/error/condition>
  Error in `tmp[[1]][["spec"]]`: subscript out of bounds
  Backtrace:
      ▆
   1. ├─testthat::expect_true(nrow(tmp[[1]][["spec"]]) == 4) at test-run_script.R:12:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─base::nrow(tmp[[1]][["spec"]])
  ── Failure ('test-run_script.R:23:3'): fioRa `run_script` function returns annotated spectra output ──
  `tmp` has length 1, not length 10.
  ── Failure ('test-run_script.R:24:3'): fioRa `run_script` function returns annotated spectra output ──
  tmp[[1]] has length 1, not length 9.
  ── Failure ('test-run_script.R:25:3'): fioRa `run_script` function returns annotated spectra output ──
  "spec" %in% names(tmp[[1]]) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Error ('test-run_script.R:26:3'): fioRa `run_script` function returns annotated spectra output ──
  <subscriptOutOfBoundsError/error/condition>
  Error in `tmp[[1]][["spec"]]`: subscript out of bounds
  Backtrace:
      ▆
   1. ├─testthat::expect_true(nrow(tmp[[1]][["spec"]]) == 4) at test-run_script.R:26:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─base::nrow(tmp[[1]][["spec"]])
  
  [ FAIL 7 | WARN 2 | SKIP 1 | PASS 26 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE