* using log directory ‘/srv/hornik/tmp/CRAN/findGSEP.Rcheck’
* using R Under development (unstable) (2024-05-17 r86566)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘findGSEP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘findGSEP’ version ‘1.2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Laiyi Fu <fulaiyi321@163.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  Hequan (10:429)
  Mer (3:58)
  Polyploid (3:32)
  al (10:440)
  et (10:437)
  mer (10:86, 10:148, 10:215)
  polyploid (10:60, 10:297)

Found the following (possibly) invalid URLs:
  URL: http://www.genome.umd.edu/jellyfish.html#Release
    From: README.md
    Status: Error
    Message: server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘findGSEP’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'error_minimize3.Rd':
  \examples lines wider than 100 characters:
     error <- error_minimize3(tooptimize, x, end, xfit, xfit_left, xfit_right, d, min_valid_pos, itr, meanfit, sdfit)

Rd file 'findGSE_sp.Rd':
  \examples lines wider than 100 characters:
     fit_lists <- findGSE_sp(path, samples, sizek, exp_hom, ploidy, range_left, range_right, xlimit, ylimit, output_dir)

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs