* using log directory ‘/srv/hornik/tmp/CRAN/finalfit.Rcheck’
* using R Under development (unstable) (2023-11-12 r85514)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.4 (1)
    Debian flang-new version 17.0.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘finalfit/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘finalfit’ version ‘1.0.7’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/11s] NOTE
Maintainer: ‘Ewen Harrison <ewen.harrison@ed.ac.uk>’

Found the following (possibly) invalid URLs:
  URL: https://codecov.io/github/ewenharrison/finalfit?branch=master (moved to https://app.codecov.io/github/ewenharrison/finalfit?branch=master)
    From: README.md
    Status: 301
    Message: Moved Permanently
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘finalfit’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) boot_predict.Rd:136: Lost braces
   136 | /code{finalfit} predict functions
       |      ^
checkRd: (-1) fit2df.Rd:336: Lost braces
   336 | parameters{ vector[P] beta; }
       |           ^
checkRd: (-1) wcgs.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:9-10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:12-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:14-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:21-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wcgs.Rd:23: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Documented arguments not in \usage in Rd file 'print.Rd':
  ‘.data’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [34s/34s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [18s/18s] OK
  Running ‘testthat.R’ [18s/18s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [75s/77s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs