* using log directory ‘/srv/hornik/tmp/CRAN/fido.Rcheck’
* using R Under development (unstable) (2024-05-27 r86634)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘fido/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fido’ version ‘1.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/7s] Note_to_CRAN_maintainers
Maintainer: ‘Michelle Nixon <pistner@psu.edu>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fido’ can be installed ... [187s/187s] OK
* used C++ compiler: ‘Debian clang version 18.1.5 (2)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... WARNING
Found the following shell script(s) with CR or CRLF line endings:
  configure.ac
Non-Windows OSes require LF line endings.
* checking line endings in C/C++/Fortran sources/headers ... NOTE
Found the following sources/headers with CR or CRLF line endings:
  inst/include/fidoGenerated.h
Some Unix compilers require LF line endings.
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [16s/16s] ERROR
  Running ‘testthat.R’ [16s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(fido)
  > 
  > #Sys.setenv(KMP_DUPLICATE_LIB_OK="TRUE")
  > test_check("fido")
    [1]  0.27980164 -0.69169550 -0.53205652  0.11488451 -0.42419872  2.20261388
    [7] -1.62190133 -0.90893172  0.07891428  0.75060681  0.43593605  0.26819442
   [13]  1.80500863 -1.10771140  0.22429040 -0.40132592 -0.98089190  1.38100129
   [19]  1.12901181 -0.19753202 -0.53870779  1.04026738 -0.63115578  2.12213857
   [25] -0.82307874  0.70656307  0.43165115 -0.64453510  1.58224393  0.62811451
   [31]  0.89501772 -0.28217007 -2.21204203  0.36596669  0.97222689  1.67404382
   [37]  1.46563000 -0.87189326  1.97363334  0.70185356  2.08392643  0.63094442
   [43]  1.22776486  0.12217813 -1.03605962 -0.89222054 -1.22289592 -0.87526651
   [49] -0.03333173 -0.27203271 -0.84574313 -0.53517698  0.33447796 -0.83169800
   [55]  0.07464790 -0.76952470  2.15018930 -0.41021234 -0.18286798 -0.08654284
   [61] -0.54393155  1.52104775 -1.53612813 -1.30756697  1.09125501 -1.38245608
   [67]  0.72542932  0.37394038  1.60735756 -1.08660500  0.90022171 -0.06541094
   [73]  2.49390475  0.46940438  1.49629090 -2.19769299  0.59444078  0.73268309
   [79] -0.48894768 -0.80608811 -0.88644667 -0.31809999  0.90436019 -0.46174904
   [85] -0.56497200  0.48894062 -0.01916430 -0.44084232  1.08296699 -0.25655508
   [91]  2.02723244 -0.05459168 -0.35998813  2.02459423  1.07977921 -2.46215095
   [97] -1.01491387  0.91852785 -0.22230098 -0.19764292
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 115 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-sylvester-speedups.R:31:3'): Maltipoo Sylvester Results Agree ──
  Error in `chol.default(Sigma)`: the leading minor of order 3 is not positive
  Backtrace:
      ▆
   1. └─fido::pibble_sim(D = 20, N = 5) at test-sylvester-speedups.R:31:3
   2.   ├─base::t(chol(Sigma))
   3.   ├─base::chol(Sigma)
   4.   └─base::chol.default(Sigma)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 115 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [15s/17s] OK
* checking PDF version of manual ... [4s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE