* using log directory 'd:/RCompile/CRANincoming/R-devel/fibos.Rcheck'
* using R Under development (unstable) (2025-03-08 r87910 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'fibos/DESCRIPTION' ... OK
* this is package 'fibos' version '1.2.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Herson Hebert Mendes Soares <hersonhebert@hotmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  bioinformatics (13:32)
  fibos (12:18)

Found the following (possibly) invalid URLs:
  URL: https://github.com/insilico-unifei/fibos-R-case-study-supp.git (moved to https://github.com/insilico-unifei/fibos-R-case-study-supp)
    From: README.md
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .github
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  .github
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'fibos' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Maintainer field differs from that derived from Authors@R
  Maintainer: 'Herson Hebert Mendes Soares <hersonhebert@hotmail.com>'
  Authors@R:  'Herson Hebert <hersonhebert@hotmail.com>'

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [12s] ERROR
Running examples in 'fibos-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: occluded_surface
> ### Title: Occluded Surface (OS)
> ### Aliases: occluded_surface
> 
> ### ** Examples
> 
> library(fibos)
> 
> # Calculate FIBOS per atom and create .srf files in fibos_files folder
> pdb_fibos <- occluded_surface("8rxn", method = "FIBOS")
Error in py_module_import(module, convert = convert) : 
  ModuleNotFoundError: No module named 'fibos'
Run `reticulate::py_last_error()` for details.
Calls: occluded_surface -> execute_windows -> <Anonymous> -> py_module_import
Execution halted
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 3 NOTEs