* using log directory 'd:/RCompile/CRANincoming/R-devel/featurefinder.Rcheck' * using R Under development (unstable) (2024-12-15 r87442 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'featurefinder/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'featurefinder' version '1.1' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [11s] WARNING Maintainer: 'Richard Davis ' Insufficient package version (submitted: 1.1, existing: 1.1) Possibly misspelled words in DESCRIPTION: RPART (7:82) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: test/allfactors/.RData These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. CRAN-pack does not know about test/allfactors/.RData * checking for portable file names ... WARNING Found the following files with non-portable file names: test/allfactors/mainfactors SMIfactor.Rdata test/mainfactors ALL.Rdata These are not fully portable file names. See section 'Package structure' in the 'Writing R Extensions' manual. * checking whether package 'featurefinder' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. Non-standard files/directories found at top level: 'Rplot001.png' 'featurefinder.pdf' 'test' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE findFeatures: no visible global function definition for 'read.csv' findFeatures: no visible global function definition for 'as.formula' getVarAv: no visible global function definition for 'na.omit' saveTree: no visible global function definition for 'dev.off' Undefined global functions or variables: as.formula dev.off na.omit read.csv Consider adding importFrom("grDevices", "dev.off") importFrom("stats", "as.formula", "na.omit") importFrom("utils", "read.csv") to your NAMESPACE file. Found if() conditions comparing class() to string: File 'featurefinder/R/featurefinder.r': if (class(dd[, thisVar]) == "factor") ... File 'featurefinder/R/featurefinder.r': if (class(dd[, thisVar]) == "factor") ... File 'featurefinder/R/featurefinder.r': if (class(res) == "factor") ... Use inherits() (or maybe is()) instead. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... WARNING Found the following significant warnings: Warning: working directory was changed to 'd:/RCompile/CRANincoming/R-devel/featurefinder.Rcheck/allfactors', resetting * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building 'my-vignette.Rmd' using rmarkdown Quitting from lines 31-35 [unnamed-chunk-1] (my-vignette.Rmd) Error: processing vignette 'my-vignette.Rmd' failed with diagnostics: cannot change working directory --- failed re-building 'my-vignette.Rmd' SUMMARY: processing the following file failed: 'my-vignette.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 3 WARNINGs, 3 NOTEs