downloading reverse dependencies ... downloading admix_2.1-3.tar.gz ... ok downloading asm_0.2.0.tar.gz ... ok downloading carSurv_1.0.0.tar.gz ... ok downloading DiffCorr_0.4.3.tar.gz ... ok downloading DNLC_1.0.0.tar.gz ... ok downloading EGRNi_0.1.6.tar.gz ... ok downloading ERP_2.2.tar.gz ... ok downloading GeneCycle_1.1.5.tar.gz ... ok downloading GeneNet_1.2.16.tar.gz ... ok downloading ggisotonic_0.1.2.tar.gz ... ok downloading HDMT_1.0.5.tar.gz ... ok downloading InvStablePrior_0.1.1.tar.gz ... ok downloading medScan_1.0.2.tar.gz ... ok downloading MixTwice_2.0.tar.gz ... ok downloading NetworkToolbox_1.4.2.tar.gz ... ok downloading nlnet_1.4.tar.gz ... ok downloading qgraph_1.9.8.tar.gz ... ok downloading rags2ridges_2.2.7.tar.gz ... ok downloading rnmamod_0.4.0.tar.gz ... ok downloading sda_1.3.8.tar.gz ... ok downloading SimSeq_1.4.0.tar.gz ... ok downloading SOHPIE_1.0.6.tar.gz ... ok downloading st_1.2.7.tar.gz ... ok downloading TBEST_5.2.tar.gz ... ok downloading vaccine_1.2.1.tar.gz ... ok downloading dsos_0.1.2.tar.gz ... ok downloading frontier_1.1-8.tar.gz ... ok downloading mutoss_0.1-13.tar.gz ... ok downloading sand_2.0.0.tar.gz ... ok downloading wrMisc_1.15.1.tar.gz ... ok downloading wrProteo_1.12.0.tar.gz ... ok downloading wrTopDownFrag_1.0.2.tar.gz ... ok installing dependencies ‘ashr’, ‘crossval’, ‘eigenmodel’, ‘fdrtool’, ‘gemtc’, ‘GOstats’, ‘HDMT’, ‘IsingFit’, ‘KEGGgraph’, ‘locfdr’, ‘longitudinal’, ‘mcmcplots’, ‘micEcon’, ‘mixdist’, ‘networkTomography’, ‘ngspatial’, ‘org.Sc.sgd.db’, ‘qqman’, ‘ROTS’, ‘samr’, ‘sda’, ‘simctest’, ‘simest’, ‘som’, ‘survML’, ‘vioplot’, ‘vsn’, ‘wrGraph’, ‘wrMisc’, ‘wrProteo’ Warning: package ‘networkTomography’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘Category’, ‘AnnotationForge’, ‘etrunct’, ‘denstrip’, ‘GSA’, ‘batchmeans’ begin installing package ‘Category’ begin installing package ‘AnnotationForge’ begin installing package ‘etrunct’ begin installing package ‘denstrip’ begin installing package ‘GSA’ begin installing package ‘batchmeans’ begin installing package ‘locfdr’ begin installing package ‘longitudinal’ begin installing package ‘qqman’ begin installing package ‘fdrtool’ begin installing package ‘KEGGgraph’ begin installing package ‘gemtc’ begin installing package ‘crossval’ begin installing package ‘simest’ begin installing package ‘survML’ begin installing package ‘simctest’ begin installing package ‘micEcon’ begin installing package ‘eigenmodel’ begin installing package ‘org.Sc.sgd.db’ begin installing package ‘vioplot’ begin installing package ‘mixdist’ begin installing package ‘som’ begin installing package ‘vsn’ begin installing package ‘wrMisc’ begin installing package ‘ROTS’ * installing *source* package ‘crossval’ ... ** package ‘crossval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crossval) * installing *source* package ‘batchmeans’ ... ** package ‘batchmeans’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (batchmeans) begin installing package ‘ngspatial’ * installing *source* package ‘etrunct’ ... ** package ‘etrunct’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (etrunct) begin installing package ‘ashr’ * installing *source* package ‘longitudinal’ ... ** package ‘longitudinal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (longitudinal) * installing *source* package ‘qqman’ ... ** package ‘qqman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qqman) * installing *source* package ‘eigenmodel’ ... ** package ‘eigenmodel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eigenmodel) * installing *source* package ‘denstrip’ ... ** package ‘denstrip’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (denstrip) begin installing package ‘mcmcplots’ * installing *source* package ‘GSA’ ... ** package ‘GSA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSA) begin installing package ‘samr’ * installing *source* package ‘survML’ ... ** package ‘survML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survML) * installing *source* package ‘locfdr’ ... ** package ‘locfdr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (locfdr) * installing *source* package ‘fdrtool’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpU4Cpeb/R.INSTALL168f79d51b0ca/fdrtool/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fdrtool_init.c -o fdrtool_init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isomean.c -o isomean.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o fdrtool.so fdrtool_init.o isomean.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpU4Cpeb/R.INSTALL168f79d51b0ca/fdrtool/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-fdrtool/00new/fdrtool/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fdrtool) begin installing package ‘IsingFit’ begin installing package ‘HDMT’ begin installing package ‘sda’ * installing *source* package ‘mixdist’ ... ** package ‘mixdist’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixdist) * installing *source* package ‘vioplot’ ... ** package ‘vioplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vioplot) * installing *source* package ‘som’ ... ** package ‘som’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp47YCC9/R.INSTALL168fab2f012d0a/som/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c som.cc -o som.o In file included from tntsupp.h:8, from sub.h:1, from SomParam.h:2, from som.cc:4: tnt/fmat.h: In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*this.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double rect_dist(TNT::Region2D >, TNT::Region2D >)’ at SomParam.h:11:19: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:12:40: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:16:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)’ at som.cc:57:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:32:24: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:227:20, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:217:24, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:34:17: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)’ at som.cc:76:38: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)’ at som.cc:108:1: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o som.so som.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp47YCC9/R.INSTALL168fab2f012d0a/som/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-som/00new/som/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (som) * installing *source* package ‘sda’ ... ** package ‘sda’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sda) * installing *source* package ‘mcmcplots’ ... ** package ‘mcmcplots’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcmcplots) * installing *source* package ‘micEcon’ ... ** package ‘micEcon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (micEcon) * installing *source* package ‘simctest’ ... ** package ‘simctest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWTv5Ww/R.INSTALL168f9c588d506c/simctest/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simctest.c -o simctest.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o simctest.so init.o simctest.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWTv5Ww/R.INSTALL168f9c588d506c/simctest/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-simctest/00new/simctest/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simctest) * installing *source* package ‘KEGGgraph’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGgraph) * installing *source* package ‘gemtc’ ... ** package ‘gemtc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAM3XgY/R.INSTALL168f8e53f4f8d5/gemtc/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rank.c -o rank.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o gemtc.so init.o rank.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAM3XgY/R.INSTALL168f8e53f4f8d5/gemtc/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-gemtc/00new/gemtc/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gemtc) * installing *source* package ‘simest’ ... ** package ‘simest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaxpmO9/R.INSTALL168f99498f589f/simest/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cpen.c -o cpen.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c derivcvxpec.c -o derivcvxpec.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c penta.c -o penta.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c predcvxpen.c -o predcvxpen.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spen_egcv.c -o spen_egcv.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o simest.so cpen.o derivcvxpec.o init.o penta.o predcvxpen.o spen_egcv.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaxpmO9/R.INSTALL168f99498f589f/simest/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-simest/00new/simest/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simest) * installing *source* package ‘HDMT’ ... ** package ‘HDMT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HDMT) * installing *source* package ‘vsn’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMGRErz/R.INSTALL168fad1d8be28/vsn/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vsn.c -o vsn.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vsn2.c -o vsn2.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o vsn.so init.o vsn.o vsn2.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMGRErz/R.INSTALL168fad1d8be28/vsn/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-vsn/00new/vsn/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vsn) * installing *source* package ‘samr’ ... ** package ‘samr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyNk6Wm/R.INSTALL1692d45c292a29/samr/src' gfortran-14 -fpic -g -O2 -Wall -mtune=native -c rankcol.f -o rankcol.o rankcol.f:11:5: 11 | 23003 continue | 1 Warning: Label 23003 at (1) defined but not used [-Wunused-label] rankcol.f:13:5: 13 | 23001 continue | 1 Warning: Label 23001 at (1) defined but not used [-Wunused-label] rankcol.f:127:12: 127 | DATAP=DATA(INDEXP) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] rankcol.f:133:15: 133 | DATAP=DATA(INDEXP) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] rankcol.f:145:15: 145 | DATAP=DATA(INDEXP) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] rankcol.f:232:18: 232 | DATAP=DATA(INDEXP) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] rankcol.f:75:16: 75 | INTEGER M | 1 Warning: Unused variable ‘datapntegerm’ declared at (1) [-Wunused-variable] gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c samr_init.c -o samr_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o samr.so rankcol.o samr_init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyNk6Wm/R.INSTALL1692d45c292a29/samr/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-samr/00new/samr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (samr) * installing *source* package ‘IsingFit’ ... ** package ‘IsingFit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsingFit) * installing *source* package ‘ROTS’ ... ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiE7Eq1/R.INSTALL168fb15a8682a4/ROTS/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NeedForSpeed1.cpp -o NeedForSpeed1.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NeedForSpeed2.cpp -o NeedForSpeed2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pvalue.cpp -o pvalue.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ROTS.so NeedForSpeed1.o NeedForSpeed2.o RcppExports.o pvalue.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiE7Eq1/R.INSTALL168fb15a8682a4/ROTS/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-ROTS/00new/ROTS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROTS) * installing *source* package ‘wrMisc’ ... ** package ‘wrMisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wrMisc) begin installing package ‘wrGraph’ begin installing package ‘wrProteo’ * installing *source* package ‘org.Sc.sgd.db’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (org.Sc.sgd.db) * installing *source* package ‘ashr’ ... ** package ‘ashr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDeD9zp/R.INSTALL1691acf940f22/ashr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MixSquarem.cpp -o MixSquarem.o MixSquarem.cpp: In function ‘Rcpp::List squarem1(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::List)’: MixSquarem.cpp:65:56: warning: ‘alpha’ may be used uninitialized [-Wmaybe-uninitialized] 65 | double sr2_scalar,sq2_scalar,sv2_scalar,srv_scalar,alpha,stepmin,stepmax; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ashr.so MixSquarem.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDeD9zp/R.INSTALL1691acf940f22/ashr/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-ashr/00new/ashr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ashr) * installing *source* package ‘AnnotationForge’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationForge) * installing *source* package ‘wrGraph’ ... ** package ‘wrGraph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wrGraph) * installing *source* package ‘ngspatial’ ... ** package ‘ngspatial’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQnI8Si/R.INSTALL1691969938b01/ngspatial/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ngspatialmod.cpp -o ngspatialmod.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ngspatial.so RcppExports.o init.o ngspatialmod.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQnI8Si/R.INSTALL1691969938b01/ngspatial/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-ngspatial/00new/ngspatial/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ngspatial) * installing *source* package ‘Category’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Category) begin installing package ‘GOstats’ * installing *source* package ‘wrProteo’ ... ** package ‘wrProteo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wrProteo) * installing *source* package ‘GOstats’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOstats) checking fdrtool_1.2.18.tar.gz ... checking admix_2.1-3.tar.gz ... checking asm_0.2.0.tar.gz ... checking carSurv_1.0.0.tar.gz ... checking DNLC_1.0.0.tar.gz ... checking DiffCorr_0.4.3.tar.gz ... checking EGRNi_0.1.6.tar.gz ... checking ERP_2.2.tar.gz ... checking GeneCycle_1.1.5.tar.gz ... checking GeneNet_1.2.16.tar.gz ... checking ggisotonic_0.1.2.tar.gz ... checking HDMT_1.0.5.tar.gz ... checking InvStablePrior_0.1.1.tar.gz ... checking medScan_1.0.2.tar.gz ... checking MixTwice_2.0.tar.gz ... checking NetworkToolbox_1.4.2.tar.gz ... checking nlnet_1.4.tar.gz ... checking qgraph_1.9.8.tar.gz ... checking rags2ridges_2.2.7.tar.gz ... checking rnmamod_0.4.0.tar.gz ... checking sda_1.3.8.tar.gz ... checking SimSeq_1.4.0.tar.gz ... checking SOHPIE_1.0.6.tar.gz ... checking st_1.2.7.tar.gz ... checking TBEST_5.2.tar.gz ... checking vaccine_1.2.1.tar.gz ... checking dsos_0.1.2.tar.gz ... checking frontier_1.1-8.tar.gz ... checking mutoss_0.1-13.tar.gz ... checking wrMisc_1.15.1.tar.gz ... checking wrProteo_1.12.0.tar.gz ... checking wrTopDownFrag_1.0.2.tar.gz ... checking sand_2.0.0.tar.gz ... Depends: Package: fdrtool Depends: R (>= 3.4.0) Imports: graphics, grDevices, stats Timings: user system elapsed fdrtool 26.81 3.729 30.932 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 9 23 Check results summary: fdrtool ... OK rdepends_admix ... OK rdepends_asm ... OK rdepends_carSurv ... OK rdepends_DiffCorr ... OK rdepends_DNLC ... NOTE * checking LazyData ... NOTE rdepends_dsos ... OK rdepends_EGRNi ... OK rdepends_ERP ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_frontier ... OK rdepends_GeneCycle ... NOTE * checking Rd cross-references ... NOTE rdepends_GeneNet ... NOTE * checking Rd cross-references ... NOTE rdepends_ggisotonic ... OK rdepends_HDMT ... OK rdepends_InvStablePrior ... OK rdepends_medScan ... OK rdepends_MixTwice ... OK rdepends_mutoss ... OK rdepends_NetworkToolbox ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_nlnet ... OK rdepends_qgraph ... OK rdepends_rags2ridges ... NOTE * checking Rd cross-references ... NOTE rdepends_rnmamod ... OK rdepends_sand ... NOTE * checking package dependencies ... NOTE rdepends_sda ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_SimSeq ... OK rdepends_SOHPIE ... OK rdepends_st ... OK rdepends_TBEST ... OK rdepends_vaccine ... OK rdepends_wrMisc ... OK rdepends_wrProteo ... OK rdepends_wrTopDownFrag ... NOTE * checking Rd cross-references ... NOTE * checking LazyData ... NOTE