downloading reverse dependencies ‘fdacluster’, ‘squat’, ‘veesa’ trying URL 'file:///data/Repositories/CRAN/src/contrib/fdacluster_0.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/squat_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/veesa_0.1.7.tar.gz' installing dependencies ‘fdacluster’, ‘fdasrvf’, ‘funData’, ‘future.apply’, ‘gghighlight’, ‘MFPCA’, ‘plot3Drgl’, ‘roahd’, ‘tolerance’ begin installing package ‘tolerance’ begin installing package ‘funData’ begin installing package ‘future.apply’ begin installing package ‘roahd’ begin installing package ‘gghighlight’ begin installing package ‘plot3Drgl’ * installing *source* package ‘future.apply’ ... ** this is package ‘future.apply’ version ‘1.20.2’ ** package ‘future.apply’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.apply) * installing *source* package ‘plot3Drgl’ ... ** this is package ‘plot3Drgl’ version ‘1.0.5’ ** package ‘plot3Drgl’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plot3Drgl) * installing *source* package ‘gghighlight’ ... ** this is package ‘gghighlight’ version ‘0.5.0’ ** package ‘gghighlight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gghighlight) * installing *source* package ‘funData’ ... ** this is package ‘funData’ version ‘1.3-9’ ** package ‘funData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘integrate’ in package ‘funData’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘funData’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (funData) begin installing package ‘MFPCA’ * installing *source* package ‘roahd’ ... ** this is package ‘roahd’ version ‘1.4.3’ ** package ‘roahd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roahd) * installing *source* package ‘tolerance’ ... ** this is package ‘tolerance’ version ‘3.0.0’ ** package ‘tolerance’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tolerance) begin installing package ‘fdasrvf’ * installing *source* package ‘MFPCA’ ... ** this is package ‘MFPCA’ version ‘1.3-11’ ** package ‘MFPCA’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-15 -E checking for gcc... (cached) gcc-15 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc-15 accepts -g... (cached) yes checking for gcc-15 option to accept ISO C89... (cached) none needed checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFTW... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYRG981/R.INSTALL39e1e169a62173/MFPCA/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MFPCA-init.c -o MFPCA-init.o MFPCA-init.c:10:27: warning: missing braces around initializer [-Wmissing-braces] 10 | R_CMethodDef cMethods[] = { | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct2D.c -o dct2D.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct3D.c -o dct3D.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o MFPCA.so MFPCA-init.o dct2D.o dct3D.o -lfftw3 -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYRG981/R.INSTALL39e1e169a62173/MFPCA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MFPCA/00new/MFPCA/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MFPCA) * installing *source* package ‘fdasrvf’ ... ** this is package ‘fdasrvf’ version ‘2.4.3’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfTqPtt/R.INSTALL39e487382d1415/fdasrvf/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperSRSF.cpp -o wrapperSRSF.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperQMAP.cpp -o wrapperQMAP.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesian.cpp -o bayesian.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pair_align_functions_expomap.cpp -o pair_align_functions_expomap.o pair_align_functions_expomap.cpp: In function ‘arma::vec calcY(double, arma::vec)’: pair_align_functions_expomap.cpp:9:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 9 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp:14:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 14 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp: In function ‘Rcpp::NumericVector cuL2norm2(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:27:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 27 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:34:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 34 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:41:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 41 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp:46:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 46 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp: In function ‘double order_l2norm(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:70:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 70 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:77:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 77 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 84 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/DP.cpp -o fdasrsf/DP.o fdasrsf/DP.cpp: In function ‘double CostFn2(const double*, const double*, int, int, int, int, int, int, double, int)’: fdasrsf/DP.cpp:228:44: warning: ‘tmp_pen’ may be used uninitialized [-Wmaybe-uninitialized] 228 | E += (tmp*tmp + lam*tmp_pen); | ~~~^~~~~~~~ fdasrsf/DP.cpp:194:73: note: ‘tmp_pen’ was declared here 194 | double m = (j-l)/(double)(i-k), sqrtm = sqrt(m), E = 0, y, tmp, tmp_pen, ip, fp, q1dotq2; | ^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/dp_grid.cpp -o fdasrsf/dp_grid.o fdasrsf/dp_grid.cpp: In function ‘double dp_costs(double*, double*, int, double*, double*, int, int, double*, int*, int, double*, int*, int, double*, int*, double, size_t, int (*)[2])’: fdasrsf/dp_grid.cpp:32:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for ( i=0; i&)’: meanCenterClass.cpp:66:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 66 | for (int i = halfPoint;i < numberOfPoints;++i) | ~~^~~~~~~~~~~~~~~~ meanCenterClass.cpp:76:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 76 | for (int k = i;k < numberOfPoints;++k) | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c medianCenterClass.cpp -o medianCenterClass.o medianCenterClass.cpp: In member function ‘virtual CenterType MedianCenterMethod::GetCenter(const arma::mat&, const arma::cube&, const std::shared_ptr&)’: medianCenterClass.cpp:66:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 66 | for (int i = halfPoint;i < numberOfPoints;++i) | ~~^~~~~~~~~~~~~~~~ medianCenterClass.cpp:76:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 76 | for (int k = i;k < numberOfPoints;++k) | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c medoidCenterClass.cpp -o medoidCenterClass.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c noWarpingClass.cpp -o noWarpingClass.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c normalizedL2DissimilarityClass.cpp -o normalizedL2DissimilarityClass.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pearsonDissimilarityClass.cpp -o pearsonDissimilarityClass.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c polyCenterClass.cpp -o polyCenterClass.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c shiftWarpingClass.cpp -o shiftWarpingClass.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utilityFunctions.cpp -o utilityFunctions.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fdacluster.so RcppExports.o affineWarpingClass.o baseDissimilarityClass.o baseOptimizerClass.o baseWarpingClass.o bobyqaOptimizerClass.o dilationWarpingClass.o kmaModelClass.o kmap.o l2DissimilarityClass.o lowessCenterClass.o meanCenterClass.o medianCenterClass.o medoidCenterClass.o noWarpingClass.o normalizedL2DissimilarityClass.o pearsonDissimilarityClass.o polyCenterClass.o shiftWarpingClass.o utilityFunctions.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4kIxCn/R.INSTALL39e61729010386/fdacluster/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fdacluster/00new/fdacluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fdacluster) checking fdasrvf_2.4.3.tar.gz ... checking fdacluster_0.4.2.tar.gz ... checking squat_0.5.0.tar.gz ... checking veesa_0.1.7.tar.gz ... Depends: Package: fdasrvf Depends: R (>= 4.3.0), Imports: cli, coda, doParallel, fields, foreach, lpSolve, Matrix, mvtnorm, Rcpp, rlang, minpack.lm, tolerance, viridisLite LinkingTo: Rcpp, RcppArmadillo Timings: user system elapsed fdasrvf 158.54 7.24 168.751 Results: Check status summary: OK Source packages 1 Reverse depends 3 Check results summary: fdasrvf ... OK rdepends_fdacluster ... OK rdepends_squat ... OK rdepends_veesa ... OK