downloading reverse dependencies ... downloading fdacluster_0.4.1.tar.gz ... ok downloading squat_0.4.0.tar.gz ... ok downloading veesa_0.1.6.tar.gz ... ok installing dependencies ‘fdacluster’, ‘fdasrvf’, ‘gghighlight’, ‘MFPCA’, ‘plot3Drgl’, ‘roahd’, ‘tolerance’ begin installing package ‘tolerance’ begin installing package ‘plot3Drgl’ begin installing package ‘MFPCA’ begin installing package ‘roahd’ begin installing package ‘gghighlight’ * installing *source* package ‘gghighlight’ ... ** this is package ‘gghighlight’ version ‘0.5.0’ ** package ‘gghighlight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gghighlight) * installing *source* package ‘plot3Drgl’ ... ** this is package ‘plot3Drgl’ version ‘1.0.4’ ** package ‘plot3Drgl’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plot3Drgl) * installing *source* package ‘roahd’ ... ** this is package ‘roahd’ version ‘1.4.3’ ** package ‘roahd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roahd) * installing *source* package ‘MFPCA’ ... ** this is package ‘MFPCA’ version ‘1.3-10’ ** package ‘MFPCA’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-14 -std=gnu23 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 -std=gnu23 accepts -g... yes checking for gcc-14 -std=gnu23 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-14 -std=gnu23 -E checking for gcc... (cached) gcc-14 -std=gnu23 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc-14 -std=gnu23 accepts -g... (cached) yes checking for gcc-14 -std=gnu23 option to accept ISO C89... (cached) none needed checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFTW... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3Nckqd/R.INSTALL1f2da51c683fd6/MFPCA/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MFPCA-init.c -o MFPCA-init.o MFPCA-init.c:10:27: warning: missing braces around initializer [-Wmissing-braces] 10 | R_CMethodDef cMethods[] = { | ^ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct2D.c -o dct2D.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct3D.c -o dct3D.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o MFPCA.so MFPCA-init.o dct2D.o dct3D.o -lfftw3 -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3Nckqd/R.INSTALL1f2da51c683fd6/MFPCA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MFPCA/00new/MFPCA/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MFPCA) * installing *source* package ‘tolerance’ ... ** this is package ‘tolerance’ version ‘3.0.0’ ** package ‘tolerance’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tolerance) begin installing package ‘fdasrvf’ * installing *source* package ‘fdasrvf’ ... ** this is package ‘fdasrvf’ version ‘2.4.0’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMXMP5A/R.INSTALL1f31fd7df1b7eb/fdasrvf/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperSRSF.cpp -o wrapperSRSF.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperQMAP.cpp -o wrapperQMAP.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesian.cpp -o bayesian.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pair_align_functions_expomap.cpp -o pair_align_functions_expomap.o pair_align_functions_expomap.cpp: In function ‘arma::vec calcY(double, arma::vec)’: pair_align_functions_expomap.cpp:9:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 9 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp:14:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 14 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp: In function ‘Rcpp::NumericVector cuL2norm2(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:27:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 27 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:34:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 34 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:41:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 41 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp:46:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 46 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp: In function ‘double order_l2norm(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:70:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 70 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:77:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 77 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 84 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/DP.cpp -o fdasrsf/DP.o fdasrsf/DP.cpp: In function ‘double CostFn2(const double*, const double*, int, int, int, int, int, int, double, int)’: fdasrsf/DP.cpp:228:44: warning: ‘tmp_pen’ may be used uninitialized [-Wmaybe-uninitialized] 228 | E += (tmp*tmp + lam*tmp_pen); | ~~~^~~~~~~~ fdasrsf/DP.cpp:194:73: note: ‘tmp_pen’ was declared here 194 | double m = (j-l)/(double)(i-k), sqrtm = sqrt(m), E = 0, y, tmp, tmp_pen, ip, fp, q1dotq2; | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/dp_grid.cpp -o fdasrsf/dp_grid.o fdasrsf/dp_grid.cpp: In function ‘double dp_costs(double*, double*, int, double*, double*, int, int, double*, int*, int, double*, int*, int, double*, int*, double, size_t, int (*)[2])’: fdasrsf/dp_grid.cpp:32:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for ( i=0; i&)’: meanCenterClass.cpp:66:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 66 | for (int i = halfPoint;i < numberOfPoints;++i) | ~~^~~~~~~~~~~~~~~~ meanCenterClass.cpp:76:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 76 | for (int k = i;k < numberOfPoints;++k) | ~~^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c medianCenterClass.cpp -o medianCenterClass.o medianCenterClass.cpp: In member function ‘virtual CenterType MedianCenterMethod::GetCenter(const arma::mat&, const arma::cube&, const std::shared_ptr&)’: medianCenterClass.cpp:66:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 66 | for (int i = halfPoint;i < numberOfPoints;++i) | ~~^~~~~~~~~~~~~~~~ medianCenterClass.cpp:76:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 76 | for (int k = i;k < numberOfPoints;++k) | ~~^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c medoidCenterClass.cpp -o medoidCenterClass.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c noWarpingClass.cpp -o noWarpingClass.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c normalizedL2DissimilarityClass.cpp -o normalizedL2DissimilarityClass.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pearsonDissimilarityClass.cpp -o pearsonDissimilarityClass.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c polyCenterClass.cpp -o polyCenterClass.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c shiftWarpingClass.cpp -o shiftWarpingClass.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utilityFunctions.cpp -o utilityFunctions.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fdacluster.so RcppExports.o affineWarpingClass.o baseDissimilarityClass.o baseOptimizerClass.o baseWarpingClass.o bobyqaOptimizerClass.o dilationWarpingClass.o kmaModelClass.o kmap.o kumaraswamyWarpingClass.o l2DissimilarityClass.o lowessCenterClass.o meanCenterClass.o medianCenterClass.o medoidCenterClass.o noWarpingClass.o normalizedL2DissimilarityClass.o pearsonDissimilarityClass.o polyCenterClass.o shiftWarpingClass.o utilityFunctions.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4v8bSr/R.INSTALL1f32724155ff18/fdacluster/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fdacluster/00new/fdacluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fdacluster) checking fdasrvf_2.4.0.tar.gz ... checking fdacluster_0.4.1.tar.gz ... checking squat_0.4.0.tar.gz ... checking veesa_0.1.6.tar.gz ... Depends: Package: fdasrvf Depends: R (>= 4.3.0), Imports: cli, coda, doParallel, fields, foreach, lpSolve, Matrix, mvtnorm, Rcpp, rlang, minpack.lm, tolerance, viridisLite LinkingTo: Rcpp, RcppArmadillo Timings: user system elapsed fdasrvf 142.673 6.861 151.857 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 2 1 Check results summary: fdasrvf ... OK rdepends_fdacluster ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_squat ... OK rdepends_veesa ... NOTE * checking DESCRIPTION meta-information ... NOTE