* using log directory ‘/srv/hornik/tmp/CRAN/fdarep.Rcheck’ * using R Under development (unstable) (2024-02-16 r85931) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘fdarep/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fdarep’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Poorbita Kundu ’ New submission Possibly misspelled words in DESCRIPTION: Delicado (41:27) FPCA (3:24, 3:39, 3:57, 40:101, 40:117, 40:135, 40:191) Müller (41:43, 42:29, 43:28, 44:26) Yao (44:17) The Title field should be in title case. Current version is: ‘Two-dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data’ In title case that is: ‘Two-Dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data’ The Date field is over a month old. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘fdarep’ can be installed ... [29s/29s] OK * used C++ compiler: ‘Debian clang version 17.0.6 (5)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by sum(pc.k) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k[1]},chi_{2,1},chi_{2,2},...,chi_{2,pc.k[2]},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:48: Lost braces; missing escapes or markup? 48 | \item{VarOrdered}{Variance explained by each term. The terms are ordered by var(chi_{jk}). One can select the best model by truncating at a desired level of FVE, and use names(VarOrdered) to see the corresponding model terms.} | ^ checkRd: (-1) DenseMarginalFPCA.Rd:57-66: Lost braces 57 | for (i in 1:n) { | ^ checkRd: (-1) DenseMarginalFPCA.Rd:60-64: Lost braces 60 | for (s in 1:num.ages) { | ^ checkRd: (-1) DenseMarginalFPCA.Rd:61-63: Lost braces 61 | for (t in 1:num.years) { | ^ checkRd: (-1) DenseMarginalFPCA.Rd:68-70: Lost braces 68 | for (i in 1:n) { | ^ checkRd: (-1) DenseMarginalFPCA.Rd:86: Lost braces 86 | #xi{1,}(t) scores for 1st individual | ^ checkRd: (-1) DenseMarginalFPCA.Rd:88: Lost braces 88 | #xi{1,}(t) scores for 2nd individual | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:41: Lost braces; missing escapes or markup? 41 | \item{scores}{An n by (pc.k*pc.j) matrix of the estimated scores, such that the ith row of the matrix comprises estimated scores chi_{1,1},chi_{1,2},...chi_{1,pc.k},chi_{2,1},chi_{2,2},...,chi_{2,pc.k},...,chi_{pc.j,1},chi_{pc.j,2},...,chi_{pc.j,pc.k} for the ith individual.} | ^ checkRd: (-1) DenseProductFPCA.Rd:48: Lost braces; missing escapes or markup? 48 | \item{VarOrdered}{Variance explained by each term. The terms are ordered by var(chi_{jk}). One can select the best model by truncating at a desired level of FVE, and use names(VarOrdered) to see the corresponding model terms.} | ^ checkRd: (-1) DenseProductFPCA.Rd:57-66: Lost braces 57 | for (i in 1:n) { | ^ checkRd: (-1) DenseProductFPCA.Rd:60-64: Lost braces 60 | for (s in 1:num.ages) { | ^ checkRd: (-1) DenseProductFPCA.Rd:61-63: Lost braces 61 | for (t in 1:num.years) { | ^ checkRd: (-1) DenseProductFPCA.Rd:68-70: Lost braces 68 | for (i in 1:n) { | ^ checkRd: (-1) SparseMarginalFPCA.Rd:48: Lost braces; missing escapes or markup? 48 | \item{scores}{A list of pc.j matrices containing the estimated scores, such that the jth element of the list is an n by pc.k[j] matrix with its ith row comprising the estimated scores chi_{j,1},...chi_{j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) SparseMarginalFPCA.Rd:48: Lost braces; missing escapes or markup? 48 | \item{scores}{A list of pc.j matrices containing the estimated scores, such that the jth element of the list is an n by pc.k[j] matrix with its ith row comprising the estimated scores chi_{j,1},...chi_{j,pc.k[j]} for the ith individual.} | ^ checkRd: (-1) SparseMarginalFPCA.Rd:51: Lost braces; missing escapes or markup? 51 | \item{VarOrdered}{A list of pc.j vectors, containing the variance explained by each term. The terms are ordered by var(chi_{jk}). One can select the best model by truncating at a desired level of FVE, and use names(VarOrdered) to see the corresponding model terms.} | ^ checkRd: (-1) SparseProductFPCA.Rd:48: Lost braces; missing escapes or markup? 48 | \item{scores}{A list of pc.j matrices containing the estimated scores, such that the jth element of the list is an n by pc.k matrix with its ith row comprising the estimated scores chi_{j,1},...chi_{j,pc.k} for the ith individual.} | ^ checkRd: (-1) SparseProductFPCA.Rd:48: Lost braces; missing escapes or markup? 48 | \item{scores}{A list of pc.j matrices containing the estimated scores, such that the jth element of the list is an n by pc.k matrix with its ith row comprising the estimated scores chi_{j,1},...chi_{j,pc.k} for the ith individual.} | ^ checkRd: (-1) SparseProductFPCA.Rd:51: Lost braces; missing escapes or markup? 51 | \item{VarOrdered}{A list of pc.j vectors each of length pc.k, containing the variance explained by each term. The terms are ordered by var(chi_{jk}). One can select the best model by truncating at a desired level of FVE, and use names(VarOrdered) to see the corresponding model terms.} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [5s/5s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs