downloading reverse dependencies ... downloading absorber_1.0.tar.gz ... ok downloading adass_1.0.1.tar.gz ... ok downloading anacor_1.1-4.tar.gz ... ok downloading CCA_1.2.2.tar.gz ... ok downloading cfda_0.11.0.tar.gz ... ok downloading clustEff_0.3.1.tar.gz ... ok downloading CollocInfer_1.0.4.tar.gz ... ok downloading conformalInference.fd_1.1.1.tar.gz ... ok downloading ctmcmove_1.2.9.tar.gz ... ok downloading ctmva_1.4.0.tar.gz ... ok downloading cvmaPLFAM_0.1.0.tar.gz ... ok downloading dfrr_0.1.5.tar.gz ... ok downloading dynr_0.1.16-105.tar.gz ... ok downloading EBCHS_0.1.0.tar.gz ... ok downloading Ecfun_0.3-2.tar.gz ... ok downloading ExtremalDep_0.0.4-1.tar.gz ... ok downloading FADPclust_1.1.1.tar.gz ... ok downloading fda.usc_2.1.0.tar.gz ... ok downloading fdaACF_1.0.0.tar.gz ... ok downloading fdaMocca_0.1-1.tar.gz ... ok downloading fdANOVA_0.1.2.tar.gz ... ok downloading fdatest_2.1.1.tar.gz ... ok downloading freqdom.fda_1.0.1.tar.gz ... ok downloading ftsa_6.4.tar.gz ... ok downloading funcharts_1.5.0.tar.gz ... ok downloading FuncNN_1.0.tar.gz ... ok downloading FunctanSNP_0.1.0.tar.gz ... ok downloading funFEM_1.2.tar.gz ... ok downloading funkycells_1.1.1.tar.gz ... ok downloading funLBM_2.3.tar.gz ... ok downloading funpca_9.0.tar.gz ... ok downloading glober_1.0.tar.gz ... ok downloading gmtFD_0.1.0.tar.gz ... ok downloading GPFDA_3.1.3.tar.gz ... ok downloading KFPCA_2.0.tar.gz ... ok downloading KFPLS_1.0.tar.gz ... ok downloading LocKer_1.1.tar.gz ... ok downloading logitFD_1.0.tar.gz ... ok downloading longsurr_1.0.tar.gz ... ok downloading mar1s_2.1.1.tar.gz ... ok downloading mrct_0.0.1.0.tar.gz ... ok downloading MRmediation_1.0.1.tar.gz ... ok downloading multiFANOVA_0.1.0.tar.gz ... ok downloading mxnorm_1.0.3.tar.gz ... ok downloading nFunNN_1.0.tar.gz ... ok downloading pcdpca_0.4.tar.gz ... ok downloading pCODE_0.9.4.tar.gz ... ok downloading pencopulaCond_0.2.tar.gz ... ok downloading pendensity_0.2.13.tar.gz ... ok downloading PerFit_1.4.6.tar.gz ... ok downloading pfica_0.1.3.tar.gz ... ok downloading PFLR_1.1.0.tar.gz ... ok downloading puls_0.1.2.tar.gz ... ok downloading PupillometryR_0.0.5.tar.gz ... ok downloading quantreg.nonpar_1.0.tar.gz ... ok downloading refund_0.1-35.tar.gz ... ok downloading ReMFPCA_1.0.0.tar.gz ... ok downloading Rfssa_3.1.0.tar.gz ... ok downloading robCompositions_2.4.1.tar.gz ... ok downloading robflreg_1.2.tar.gz ... ok downloading Rsfar_0.0.1.tar.gz ... ok downloading sasfunclust_1.0.0.tar.gz ... ok downloading SCCS_1.7.tar.gz ... ok downloading sde_2.0.18.tar.gz ... ok downloading sft_2.2-1.tar.gz ... ok downloading slasso_1.0.0.tar.gz ... ok downloading SLFPCA_3.0.tar.gz ... ok downloading SpatFD_0.0.1.tar.gz ... ok downloading SpatialfdaR_1.0.0.tar.gz ... ok downloading srp_1.2.0.tar.gz ... ok downloading stfit_0.99.9.tar.gz ... ok downloading T4cluster_0.1.2.tar.gz ... ok downloading TestGardener_3.3.3.tar.gz ... ok downloading TFunHDDC_1.0.1.tar.gz ... ok downloading TimeVarConcurrentModel_1.0.tar.gz ... ok downloading trackeR_1.6.0.tar.gz ... ok downloading TrendTM_2.0.19.tar.gz ... ok downloading warpMix_0.1.0.tar.gz ... ok downloading wwntests_1.1.0.tar.gz ... ok downloading adamethods_1.2.1.tar.gz ... ok downloading DepthProc_2.1.5.tar.gz ... ok downloading DrBats_0.1.6.tar.gz ... ok downloading fdacluster_0.3.0.tar.gz ... ok downloading FDboost_1.1-2.tar.gz ... ok downloading fgm_1.0.tar.gz ... ok downloading fMRItools_0.4.7.tar.gz ... ok downloading freqdom_2.0.5.tar.gz ... ok downloading funData_1.3-9.tar.gz ... ok downloading GET_1.0-3.tar.gz ... ok downloading ggdist_3.3.2.tar.gz ... ok downloading hero_0.6.tar.gz ... ok downloading ir_0.2.1.tar.gz ... ok downloading latrend_1.6.1.tar.gz ... ok downloading MFPCA_1.3-10.tar.gz ... ok downloading QZ_0.2-3.tar.gz ... ok downloading runDRT_0.1.0.tar.gz ... ok downloading TSCI_3.0.4.tar.gz ... ok installing dependencies ‘ADMM’, ‘Anthropometry’, ‘archetypes’, ‘autoimage’, ‘Bolstad2’, ‘bssm’, ‘ChemoSpec’, ‘ciftiTools’, ‘clusterCrit’, ‘cmrutils’, ‘crawl’, ‘crimCV’, ‘cxxfunplus’, ‘distributional’, ‘eegkit’, ‘evgam’, ‘fda’, ‘fdasrvf’, ‘FDboost’, ‘flare’, ‘flux’, ‘fossil’, ‘freqdom’, ‘ftsa’, ‘funData’, ‘funFEM’, ‘gamboostLSS’, ‘genlasso’, ‘GFDmcv’, ‘gifti’, ‘goffda’, ‘gsignal’, ‘hyperSpec’, ‘ipumsr’, ‘irtoys’, ‘itsadug’, ‘JGL’, ‘kader’, ‘kml’, ‘lcmm’, ‘maotai’, ‘MARSS’, ‘mclustcomp’, ‘meboot’, ‘MFPCA’, ‘mixAK’, ‘monoClust’, ‘pacotest’, ‘pdfCluster’, ‘pesel’, ‘pomp’, ‘qrcm’, ‘Rdimtools’, ‘Rearrangement’, ‘roahd’, ‘rofanova’, ‘ROOPSD’, ‘Rssa’, ‘rstiefel’, ‘Rsurrogate’, ‘simTool’, ‘sparsegl’, ‘tclust’, ‘tolerance’, ‘TRAMPR’, ‘univOutl’, ‘whitening’, ‘zCompositions’ also installing the dependencies ‘pch’, ‘eegkitdata’, ‘bigsplines’, ‘hipread’, ‘diagis’, ‘tdigest’, ‘HSAUR’, ‘plotfunctions’, ‘ddalpha’, ‘ICGE’, ‘ChemoSpecUtils’, ‘readJDX’ begin installing package ‘pch’ begin installing package ‘eegkitdata’ begin installing package ‘bigsplines’ begin installing package ‘hipread’ begin installing package ‘diagis’ begin installing package ‘tdigest’ begin installing package ‘HSAUR’ begin installing package ‘plotfunctions’ begin installing package ‘ddalpha’ begin installing package ‘ICGE’ begin installing package ‘ChemoSpecUtils’ begin installing package ‘readJDX’ begin installing package ‘sparsegl’ begin installing package ‘pomp’ begin installing package ‘roahd’ begin installing package ‘crawl’ begin installing package ‘TRAMPR’ begin installing package ‘funData’ begin installing package ‘freqdom’ begin installing package ‘MARSS’ begin installing package ‘pdfCluster’ begin installing package ‘evgam’ begin installing package ‘ROOPSD’ begin installing package ‘fda’ begin installing package ‘flux’ begin installing package ‘genlasso’ begin installing package ‘kader’ begin installing package ‘Rsurrogate’ * installing *source* package ‘eegkitdata’ ... ** package ‘eegkitdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eegkitdata) begin installing package ‘cmrutils’ * installing *source* package ‘kader’ ... ** package ‘kader’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kader) begin installing package ‘fossil’ * installing *source* package ‘tdigest’ ... ** package ‘tdigest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpD2T8Qo/R.INSTALL30de041f75f61/tdigest/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdigest-main.c -o tdigest-main.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tdigest.c -o tdigest.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o tdigest.so init.o tdigest-main.o tdigest.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpD2T8Qo/R.INSTALL30de041f75f61/tdigest/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tdigest/00new/tdigest/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tdigest) begin installing package ‘pacotest’ * installing *source* package ‘freqdom’ ... ** package ‘freqdom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freqdom) begin installing package ‘irtoys’ * installing *source* package ‘ICGE’ ... ** package ‘ICGE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ICGE) begin installing package ‘whitening’ * installing *source* package ‘HSAUR’ ... ** package ‘HSAUR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HSAUR) begin installing package ‘flare’ * installing *source* package ‘TRAMPR’ ... ** package ‘TRAMPR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TRAMPR) begin installing package ‘monoClust’ * installing *source* package ‘readJDX’ ... ** package ‘readJDX’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readJDX) begin installing package ‘Rearrangement’ * installing *source* package ‘cmrutils’ ... ** package ‘cmrutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmrutils) begin installing package ‘Rssa’ * installing *source* package ‘plotfunctions’ ... ** package ‘plotfunctions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotfunctions) begin installing package ‘zCompositions’ * installing *source* package ‘flux’ ... ** package ‘flux’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flux) begin installing package ‘cxxfunplus’ * installing *source* package ‘whitening’ ... ** package ‘whitening’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whitening) begin installing package ‘ADMM’ * installing *source* package ‘Rsurrogate’ ... ** package ‘Rsurrogate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rsurrogate) begin installing package ‘maotai’ * installing *source* package ‘fossil’ ... ** package ‘fossil’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fossil) begin installing package ‘mclustcomp’ * installing *source* package ‘cxxfunplus’ ... ** package ‘cxxfunplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cxxfunplus) begin installing package ‘rstiefel’ * installing *source* package ‘ChemoSpecUtils’ ... ** package ‘ChemoSpecUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpecUtils) begin installing package ‘tclust’ * installing *source* package ‘monoClust’ ... ** package ‘monoClust’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (monoClust) begin installing package ‘Bolstad2’ * installing *source* package ‘pdfCluster’ ... ** package ‘pdfCluster’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuLpBfE/R.INSTALL30de4d4272588f/pdfCluster/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kepdf.c -o kepdf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c macon.c -o macon.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nc.c -o nc.o nc.c:17:27: warning: ‘CEntries’ defined but not used [-Wunused-const-variable=] 17 | static const R_CMethodDef CEntries[] = { | ^~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pdfCluster_init.c -o pdfCluster_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o pdfCluster.so kepdf.o macon.o nc.o pdfCluster_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuLpBfE/R.INSTALL30de4d4272588f/pdfCluster/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pdfCluster/00new/pdfCluster/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pdfCluster) begin installing package ‘archetypes’ * installing *source* package ‘roahd’ ... ** package ‘roahd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roahd) begin installing package ‘tolerance’ * installing *source* package ‘funData’ ... ** package ‘funData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘integrate’ in package ‘funData’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘funData’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (funData) begin installing package ‘univOutl’ * installing *source* package ‘pch’ ... ** package ‘pch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pch) begin installing package ‘gamboostLSS’ * installing *source* package ‘ROOPSD’ ... ** package ‘ROOPSD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROOPSD) begin installing package ‘JGL’ * installing *source* package ‘rstiefel’ ... ** package ‘rstiefel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr8fSiQ/R.INSTALL30e7bf713b40ef/rstiefel/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rstiefel.c -o rstiefel.o rstiefel.c: In function ‘rtheta_bmf’: rstiefel.c:69:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 69 | return th; | ^~ rstiefel.c:44:10: note: ‘th’ was declared here 44 | double th; | ^~ rstiefel.c: In function ‘rtheta_bing’: rstiefel.c:136:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 136 | return th; | ^~ rstiefel.c:119:10: note: ‘th’ was declared here 119 | double th; | ^~ gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rstiefel.so rstiefel.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr8fSiQ/R.INSTALL30e7bf713b40ef/rstiefel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rstiefel/00new/rstiefel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstiefel) begin installing package ‘gifti’ * installing *source* package ‘Rearrangement’ ... ** package ‘Rearrangement’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rearrangement) begin installing package ‘pesel’ * installing *source* package ‘Bolstad2’ ... ** package ‘Bolstad2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bolstad2) begin installing package ‘gsignal’ * installing *source* package ‘archetypes’ ... ** package ‘archetypes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archetypes) begin installing package ‘autoimage’ * installing *source* package ‘genlasso’ ... ** package ‘genlasso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpt5tkFo/R.INSTALL30de57798536b4/genlasso/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrixcomps.c -o matrixcomps.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o genlasso.so init.o matrixcomps.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpt5tkFo/R.INSTALL30de57798536b4/genlasso/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-genlasso/00new/genlasso/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genlasso) begin installing package ‘hyperSpec’ * installing *source* package ‘pesel’ ... ** package ‘pesel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pesel) begin installing package ‘kml’ * installing *source* package ‘irtoys’ ... ** package ‘irtoys’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYC7uUO/R.INSTALL30e144610b3ffa/irtoys/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interaction.c -o interaction.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c packagename_init.c -o packagename_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o irtoys.so interaction.o packagename_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYC7uUO/R.INSTALL30e144610b3ffa/irtoys/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-irtoys/00new/irtoys/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (irtoys) begin installing package ‘lcmm’ * installing *source* package ‘sparsegl’ ... ** package ‘sparsegl’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4l0QVy/R.INSTALL30de2f2240a078/sparsegl/src' gfortran-14 -fpic -g -O2 -Wall -mtune=native -c spmatmul.f90 -o spmatmul.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c log_sgl_subfuns.f90 -o log_sgl_subfuns.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c sgl_subfuns.f90 -o sgl_subfuns.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c sparsegl.f90 -o sparsegl.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c sparsegllog.f90 -o sparsegllog.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c wsgl.f90 -o wsgl.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparsegl_init.c -o sparsegl_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o sparsegl.so log_sgl_subfuns.o sgl_subfuns.o sparsegl.o sparsegl_init.o sparsegllog.o spmatmul.o wsgl.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4l0QVy/R.INSTALL30de2f2240a078/sparsegl/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sparsegl/00new/sparsegl/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparsegl) begin installing package ‘crimCV’ * installing *source* package ‘gifti’ ... ** package ‘gifti’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gifti) begin installing package ‘mixAK’ * installing *source* package ‘JGL’ ... ** package ‘JGL’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JGL) begin installing package ‘simTool’ * installing *source* package ‘zCompositions’ ... ** package ‘zCompositions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zCompositions) begin installing package ‘clusterCrit’ * installing *source* package ‘bigsplines’ ... ** package ‘bigsplines’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBCP4Jc/R.INSTALL30ddf36117833e/bigsplines/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bigsplines_init.c -o bigsplines_init.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c cubker.f -o cubker.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c cubkersym.f -o cubkersym.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c cubkerz.f -o cubkerz.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c cubkerzsym.f -o cubkerzsym.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c linker.f -o linker.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c linkersym.f -o linkersym.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c nomker.f -o nomker.o f951: Warning: Nonconforming tab character in column 1 of line 17 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 19 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 20 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 21 [-Wtabs] gfortran-14 -fpic -g -O2 -Wall -mtune=native -c nomkersym.f -o nomkersym.o f951: Warning: Nonconforming tab character in column 1 of line 14 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 16 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 17 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 19 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 20 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 21 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 23 [-Wtabs] gfortran-14 -fpic -g -O2 -Wall -mtune=native -c ordker.f -o ordker.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c ordkermon.f -o ordkermon.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c ordkersym.f -o ordkersym.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c perker.f -o perker.o perker.f:13:44: 13 | double precision x(n), k(m), y(n,m), a, b, c | 1 Warning: Unused variable ‘a’ declared at (1) [-Wunused-variable] perker.f:13:47: 13 | double precision x(n), k(m), y(n,m), a, b, c | 1 Warning: Unused variable ‘b’ declared at (1) [-Wunused-variable] gfortran-14 -fpic -g -O2 -Wall -mtune=native -c perkersym.f -o perkersym.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c sumfreq.f -o sumfreq.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c tpsker.f -o tpsker.o f951: Warning: Nonconforming tab character in column 4 of line 20 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 23 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 24 [-Wtabs] gfortran-14 -fpic -g -O2 -Wall -mtune=native -c tpskersym.f -o tpskersym.o f951: Warning: Nonconforming tab character in column 1 of line 18 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 20 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 22 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 23 [-Wtabs] gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o bigsplines.so bigsplines_init.o cubker.o cubkersym.o cubkerz.o cubkerzsym.o linker.o linkersym.o nomker.o nomkersym.o ordker.o ordkermon.o ordkersym.o perker.o perkersym.o sumfreq.o tpsker.o tpskersym.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBCP4Jc/R.INSTALL30ddf36117833e/bigsplines/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigsplines/00new/bigsplines/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigsplines) begin installing package ‘distributional’ * installing *source* package ‘univOutl’ ... ** package ‘univOutl’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (univOutl) begin installing package ‘qrcm’ * installing *source* package ‘flare’ ... ** package ‘flare’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUAvEKi/R.INSTALL30e1a71d73af8e/flare/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFGen.c -o SFGen.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euc_proj.c -o euc_proj.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mymath.c -o mymath.o mymath.c: In function ‘max_fabs_vc’: mymath.c:141:11: warning: variable ‘cnt’ set but not used [-Wunused-but-set-variable] 141 | int i,cnt; | ^~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr’: slim_dantzig_ladm_scr.c:262:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 262 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:261:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 261 | int j,k,m,ndata,dim,nlambda,ite1,ite2,ite,max_ite0,max_ite1,max_ite2,num_scr,num_scr1,num_scr2,num_scr1_tmp,num_scr2_tmp,flag,flag1,flag2; | ^~~~~ slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr2’: slim_dantzig_ladm_scr.c:411:21: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 411 | double T,T1,rho,zero,eps,eps1,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:410:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 410 | int j,k,m,ndata,dim,nlambda,ite1,ite,max_ite0,max_ite1,num_scr,num_scr1,num_scr1_tmp,flag,flag1; | ^~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lad_ladm_scr_btr.c -o slim_lad_ladm_scr_btr.o slim_lad_ladm_scr_btr.c: In function ‘slim_lad_ladm_scr_btr’: slim_lad_ladm_scr_btr.c:236:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 236 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lasso_ladm_scr.c -o slim_lasso_ladm_scr.o slim_lasso_ladm_scr.c: In function ‘lasso_ladm_scr’: slim_lasso_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT; | ^~~~ slim_lasso_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT; | ^~~~~ slim_lasso_ladm_scr.c: In function ‘slim_lasso_ladm_scr’: slim_lasso_ladm_scr.c:183:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 183 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lq_ladm_scr_btr.c -o slim_lq_ladm_scr_btr.o slim_lq_ladm_scr_btr.c: In function ‘slim_lq_ladm_scr_btr’: slim_lq_ladm_scr_btr.c:242:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 242 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb,qrtn; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_sqrt_ladm_scr.c -o slim_sqrt_ladm_scr.o slim_sqrt_ladm_scr.c: In function ‘sqrt_ladm_scr’: slim_sqrt_ladm_scr.c:12:92: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT; | ^~~~ slim_sqrt_ladm_scr.c:12:86: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT; | ^~~~~ slim_sqrt_ladm_scr.c: In function ‘slim_sqrt_ladm_scr’: slim_sqrt_ladm_scr.c:285:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 285 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slimh.c -o slimh.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_clime_ladm_scr.c -o sugm_clime_ladm_scr.o sugm_clime_ladm_scr.c: In function ‘sugm_clime_ladm_scr’: sugm_clime_ladm_scr.c:11:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 11 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_tiger_ladm_scr.c -o sugm_tiger_ladm_scr.o sugm_tiger_ladm_scr.c: In function ‘tiger_lasso_ladm_scr’: sugm_tiger_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp; | ^~~~ sugm_tiger_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp; | ^~~~~ sugm_tiger_ladm_scr.c: In function ‘sugm_tiger_ladm_scr’: sugm_tiger_ladm_scr.c:205:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 205 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb,tau0; | ^~~~ gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o flare.so SFGen.o euc_proj.o mymath.o registerDynamicSymbol.o slim_dantzig_ladm_scr.o slim_lad_ladm_scr_btr.o slim_lasso_ladm_scr.o slim_lq_ladm_scr_btr.o slim_sqrt_ladm_scr.o slimh.o sugm_clime_ladm_scr.o sugm_tiger_ladm_scr.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUAvEKi/R.INSTALL30e1a71d73af8e/flare/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-flare/00new/flare/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flare) begin installing package ‘eegkit’ * installing *source* package ‘autoimage’ ... ** package ‘autoimage’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autoimage) begin installing package ‘MFPCA’ * installing *source* package ‘simTool’ ... ** package ‘simTool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simTool) begin installing package ‘meboot’ * installing *source* package ‘gamboostLSS’ ... ** package ‘gamboostLSS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamboostLSS) begin installing package ‘GFDmcv’ * installing *source* package ‘MARSS’ ... ** package ‘MARSS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MARSS) begin installing package ‘itsadug’ * installing *source* package ‘clusterCrit’ ... ** package ‘clusterCrit’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to accept ISO C89... none needed checking whether we are using the GNU Fortran compiler... yes checking whether gfortran-14 accepts -g... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMIBvhA/R.INSTALL30ec1232150753/clusterCrit/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c criteria.c -o criteria.o criteria.c: In function ‘cluc_errorMsg’: criteria.c:331:17: warning: unused variable ‘msg’ [-Wunused-variable] 331 | char msg[128]; | ^~~ gfortran-14 -fpic -g -O2 -Wall -mtune=native -c norms.f95 -o norms.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c matrix.f95 -o matrix.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c critUtils.f95 -o critUtils.o critUtils.f95:847:26: 847 | sConc(1) = sConc(1) + ip - 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:851:29: 851 | sConc(2) = sConc(2) + (sPNum(1) - iw + 1) | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:855:29: 855 | sConc(1) = sConc(1) + 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] gfortran-14 -fpic -g -O2 -Wall -mtune=native -c indices.f95 -o indices.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c critCalc.f95 -o critCalc.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o clusterCrit.so criteria.o norms.o matrix.o critUtils.o indices.o critCalc.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMIBvhA/R.INSTALL30ec1232150753/clusterCrit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-clusterCrit/00new/clusterCrit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clusterCrit) begin installing package ‘ciftiTools’ * installing *source* package ‘kml’ ... ** package ‘kml’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwUgUUZ/R.INSTALL30eab7460d53e/kml/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kml.c -o kml.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kml_init.c -o kml_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o kml.so kml.o kml_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwUgUUZ/R.INSTALL30eab7460d53e/kml/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kml/00new/kml/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading #################################################################### ######################### Class ClustLongData ###################### ############################## Creation ############################ #################################################################### ### Definition ### ### Getteur ### ### Setteur ### #################################################################### ######################### Class ClustLongData ###################### ############################### Autres ############################# #################################################################### -------------------------------------------------------------------- ------------------------- Class ClustLongData ---------------------- --------------------------------- Fin ------------------------------ -------------------------------------------------------------------- ### Method : 'show' for ParKml ### #################################################################### ########################## Class parChoice ######################### ############################# Creation ############################# #################################################################### ### Constructor ### ### Show ### ### Getteur ### ### Setteur ### -------------------------------------------------------------------- ------------------------ Fin Test ParChoice ------------------------ -------------------------------------------------------------------- #################################################################### ################################ kml ############################### ############################# Creation ############################# #################################################################### ### Method: 'choice' pour clusterizLongData ### ------------------------------------------------------------------- ------------------------------- kml ------------------------------- ------------------------------- Fin ------------------------------- ------------------------------------------------------------------- ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kml) begin installing package ‘ChemoSpec’ * installing *source* package ‘Rssa’ ... ** package ‘Rssa’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-14 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-14 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes checking for fftw_execute in -lfftw3... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/init.R config.status: creating src/config.h ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSCDSQI/R.INSTALL30e20e4c86daac/Rssa/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rssa_init.c -o Rssa_init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extmat.c -o extmat.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hankel.c -o hankel.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hbhankel.c -o hbhankel.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c masks.c -o masks.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I. -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c toeplitz.c -o toeplitz.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Rssa.so Rssa_init.o extmat.o hankel.o hbhankel.o masks.o toeplitz.o -lfftw3 -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSCDSQI/R.INSTALL30e20e4c86daac/Rssa/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rssa/00new/Rssa/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rssa) begin installing package ‘FDboost’ * installing *source* package ‘eegkit’ ... ** package ‘eegkit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eegkit) * installing *source* package ‘meboot’ ... ** package ‘meboot’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYSlwRr/R.INSTALL30f0da4d9e0722/meboot/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c meboot_init.c -o meboot_init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mrapprox.c -o mrapprox.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o meboot.so meboot_init.o mrapprox.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYSlwRr/R.INSTALL30f0da4d9e0722/meboot/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-meboot/00new/meboot/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (meboot) * installing *source* package ‘distributional’ ... ** package ‘distributional’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distributional) * installing *source* package ‘tolerance’ ... ** package ‘tolerance’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tolerance) begin installing package ‘fdasrvf’ * installing *source* package ‘mclustcomp’ ... ** package ‘mclustcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZeHIm6/R.INSTALL30e79f325cedb8/mclustcomp/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary.cpp -o auxiliary.o auxiliary.cpp: In function ‘Rcpp::List getprobs(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, int, double)’: auxiliary.cpp:124:10: warning: unused variable ‘maxthr’ [-Wunused-variable] 124 | double maxthr = max(altthr); | ^~~~~~ auxiliary.cpp:125:7: warning: unused variable ‘warningint’ [-Wunused-variable] 125 | int warningint = 0; // 1<-Px, 2<-Py, 3<-Pxy | ^~~~~~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mclustcomp.so RcppExports.o auxiliary.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZeHIm6/R.INSTALL30e79f325cedb8/mclustcomp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mclustcomp/00new/mclustcomp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mclustcomp) * installing *source* package ‘crimCV’ ... ** package ‘crimCV’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppLLnrX/R.INSTALL30eb271f3fd7cb/crimCV/src' gfortran-14 -fpic -g -O2 -Wall -mtune=native -c crimCV.f90 -o crimCV.o crimCV.f90:554:9: 554 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:405:9: 405 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:374:9: 374 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:1066:2: 1066 | function sddev(np,x) result(out) | ^ Warning: ‘sddev’ defined but not used [-Wunused-function] crimCV.f90:1495:11: 1495 | if (ierr /= 0) then | ^ Warning: ‘*ierr_32(D)’ may be used uninitialized [-Wmaybe-uninitialized] crimCV.f90:2182:11: 2182 | if (ierr /= 0) then | ^ Warning: ‘*ierr_32(D)’ may be used uninitialized [-Wmaybe-uninitialized] gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c packagename_init.c -o packagename_init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrap.c -o wrap.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o crimCV.so crimCV.o packagename_init.o wrap.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppLLnrX/R.INSTALL30eb271f3fd7cb/crimCV/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-crimCV/00new/crimCV/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crimCV) * installing *source* package ‘hyperSpec’ ... ** package ‘hyperSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘apply’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘hyperSpec’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘nrow’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sample’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sweep’ from package ‘base’ in package ‘hyperSpec’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hyperSpec) * installing *source* package ‘pomp’ ... ** package ‘pomp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHNYEPD/R.INSTALL30de3c730613f5/pomp/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bspline.c -o bspline.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dinit.c -o dinit.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distributions.c -o distributions.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmeasure.c -o dmeasure.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dprior.c -o dprior.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dprocess.c -o dprocess.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c emeasure.c -o emeasure.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euler.c -o euler.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gompertz.c -o gompertz.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logmeanexp.c -o logmeanexp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lookup_table.c -o lookup_table.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mif2.c -o mif2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ou2.c -o ou2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c partrans.c -o partrans.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pfilter.c -o pfilter.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pomp_fun.c -o pomp_fun.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c probe.c -o probe.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c probe_acf.c -o probe_acf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c probe_marginal.c -o probe_marginal.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c probe_nlar.c -o probe_nlar.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c resample.c -o resample.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rinit.c -o rinit.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmeasure.c -o rmeasure.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rprior.c -o rprior.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rprocess.c -o rprocess.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simulate.c -o simulate.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c skeleton.c -o skeleton.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sobolseq.c -o sobolseq.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ssa.c -o ssa.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c synth_lik.c -o synth_lik.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trajectory.c -o trajectory.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transformations.c -o transformations.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c userdata.c -o userdata.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vmeasure.c -o vmeasure.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wpfilter.c -o wpfilter.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o pomp.so bspline.o dinit.o distributions.o dmeasure.o dprior.o dprocess.o emeasure.o euler.o gompertz.o init.o logmeanexp.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o vmeasure.o wpfilter.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHNYEPD/R.INSTALL30de3c730613f5/pomp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pomp/00new/pomp/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pomp) * installing *source* package ‘MFPCA’ ... ** package ‘MFPCA’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-14 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-14 -E checking for gcc... (cached) gcc-14 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc-14 accepts -g... (cached) yes checking for gcc-14 option to accept ISO C89... (cached) none needed checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFTW... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXilLzE/R.INSTALL30efeb3bf7bcee/MFPCA/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MFPCA-init.c -o MFPCA-init.o MFPCA-init.c:10:27: warning: missing braces around initializer [-Wmissing-braces] 10 | R_CMethodDef cMethods[] = { | ^ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct2D.c -o dct2D.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct3D.c -o dct3D.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MFPCA.so MFPCA-init.o dct2D.o dct3D.o -lfftw3 -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXilLzE/R.INSTALL30efeb3bf7bcee/MFPCA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MFPCA/00new/MFPCA/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MFPCA) * installing *source* package ‘ChemoSpec’ ... ** package ‘ChemoSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpec) * installing *source* package ‘fda’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fda) begin installing package ‘rofanova’ begin installing package ‘goffda’ begin installing package ‘funFEM’ * installing *source* package ‘itsadug’ ... ** package ‘itsadug’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (itsadug) * installing *source* package ‘qrcm’ ... ** package ‘qrcm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qrcm) * installing *source* package ‘diagis’ ... ** package ‘diagis’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfMWcNR/R.INSTALL30de0e7afc4a00/diagis/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary.cpp -o summary.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary_mat.cpp -o summary_mat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary_vec.cpp -o summary_vec.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o diagis.so RcppExports.o summary.o summary_mat.o summary_vec.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfMWcNR/R.INSTALL30de0e7afc4a00/diagis/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-diagis/00new/diagis/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diagis) begin installing package ‘bssm’ * installing *source* package ‘ciftiTools’ ... ** package ‘ciftiTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ciftiTools) * installing *source* package ‘funFEM’ ... ** package ‘funFEM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (funFEM) * installing *source* package ‘FDboost’ ... ** package ‘FDboost’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FDboost) * installing *source* package ‘GFDmcv’ ... ** package ‘GFDmcv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpkh6Mgx/R.INSTALL30f3039da4df3/GFDmcv/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c functions_MCV_testing_rcpp.cpp -o functions_MCV_testing_rcpp.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o GFDmcv.so RcppExports.o functions_MCV_testing_rcpp.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpkh6Mgx/R.INSTALL30f3039da4df3/GFDmcv/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GFDmcv/00new/GFDmcv/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GFDmcv) * installing *source* package ‘gsignal’ ... ** package ‘gsignal’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmps2WuVR/R.INSTALL30ea4514dfd9b3/gsignal/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c conv2d.cpp -o conv2d.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c filter.cpp -o filter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fwht.cpp -o fwht.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c remez.cpp -o remez.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sosfilt.cpp -o sosfilt.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c upfirdn.cpp -o upfirdn.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o gsignal.so RcppExports.o conv2d.o filter.o fwht.o remez.o sosfilt.o upfirdn.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmps2WuVR/R.INSTALL30ea4514dfd9b3/gsignal/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gsignal/00new/gsignal/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gsignal) * installing *source* package ‘goffda’ ... ** package ‘goffda’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJy1rXe/R.INSTALL30f7804592e02f/goffda/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c flm_stat.cpp -o flm_stat.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o goffda.so RcppExports.o flm_stat.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJy1rXe/R.INSTALL30f7804592e02f/goffda/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-goffda/00new/goffda/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goffda) * installing *source* package ‘ADMM’ ... ** package ‘ADMM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpekhY02/R.INSTALL30e4ef1bf5b836/ADMM/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_auxiliary.cpp -o src_auxiliary.o src_auxiliary.cpp: In function ‘arma::cube multipleinversion(arma::mat, double, arma::mat, arma::mat, arma::vec)’: src_auxiliary.cpp:16:13: warning: unused variable ‘n’ [-Wunused-variable] 16 | const int n = A.n_rows; | ^ src_auxiliary.cpp:18:13: warning: unused variable ‘d1’ [-Wunused-variable] 18 | const int d1 = R.n_rows; | ^~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c src_gathered.cpp -o src_gathered.o src_gathered.cpp: In function ‘Rcpp::List admm_bp(const arma::mat&, const arma::colvec&, arma::colvec&, double, double, int, double, double)’: src_gathered.cpp:137:13: warning: unused variable ‘m’ [-Wunused-variable] 137 | const int m = A.n_rows; | ^ src_gathered.cpp: In function ‘arma::mat enet_factor(arma::mat, double)’: src_gathered.cpp:226:13: warning: unused variable ‘m’ [-Wunused-variable] 226 | const int m = A.n_rows; | ^ src_gathered.cpp: In function ‘Rcpp::List admm_enet(const arma::mat&, const arma::colvec&, double, double, double, double, int, double)’: src_gathered.cpp:236:13: warning: unused variable ‘m’ [-Wunused-variable] 236 | const int m = A.n_rows; | ^ src_gathered.cpp: In function ‘arma::mat genlasso_factor(const arma::mat&, double, const arma::mat&)’: src_gathered.cpp:326:13: warning: unused variable ‘m’ [-Wunused-variable] 326 | const int m = A.n_rows; | ^ src_gathered.cpp:327:13: warning: unused variable ‘n’ [-Wunused-variable] 327 | const int n = A.n_cols; | ^ src_gathered.cpp: In function ‘Rcpp::List admm_genlasso(const arma::mat&, const arma::colvec&, const arma::mat&, double, double, double, int, double)’: src_gathered.cpp:335:13: warning: unused variable ‘m’ [-Wunused-variable] 335 | const int m = A.n_rows; | ^ src_gathered.cpp: In function ‘Rcpp::List admm_sdp(arma::mat&, arma::field >&, arma::vec, double, double, double, int, double, bool)’: src_gathered.cpp:929:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 929 | for (int i=0;i::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BandDepth.cpp -o BandDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from BandDepth.cpp:1: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/string.h:548, from /usr/include/c++/14/cstring:43, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/bit.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/integer/integer_log2.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/detail/integer_log2.hpp:19, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/detail/large_arithmetic.hpp:19, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/detail/const_mod.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/linear_congruential.hpp:28, from stdafx.h:24: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘void BandDepth(T3DMatrix, T3DMatrix, int, int, int, int, bool, int, double*)’ at BandDepth.cpp:43:15: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ specified bound 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Common.cpp -o Common.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from Common.cpp:10: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ Common.cpp: In function ‘double determinant(bMatrix&)’: Common.cpp:164:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::numeric::ublas::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 164 | for (int i = 0; i < pivots.size(); ++i) | ~~^~~~~~~~~~~~~~~ Common.cpp:166:31: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 166 | if (pivots(i) != i) | ~~~~~~~~~~^~~~ Common.cpp: In function ‘void outVector(TPoint&)’: Common.cpp:270:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 270 | for (int j = 0; j < point.size(); j++){ | ~~^~~~~~~~~~~~~~ Common.cpp: In function ‘void outMatrix(TMatrix&)’: Common.cpp:280:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 280 | for (int i = 0; i < points.size(); i++){ | ~~^~~~~~~~~~~~~~~ Common.cpp:282:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 282 | for (int j = 0; j < points[i].size(); j++){ | ~~^~~~~~~~~~~~~~~~~~ Common.cpp: In function ‘void outFeatures(Features)’: Common.cpp:294:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 294 | for (int i = 0; i < fs.size(); i++){ | ~~^~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DKnn.cpp -o DKnn.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from DKnn.cpp:10: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ DKnn.cpp: In function ‘void knnGetClasses(TDMatrix, int*, int, int, int, TDMatrix, int, int, bool, int, int*)’: DKnn.cpp:76:28: warning: ‘ptPrjDepths’ may be used uninitialized [-Wmaybe-uninitialized] 76 | CountDepths(reflected, learnlabels, nlearn * 2, d, learnpoints, nlearn, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 | depthType, depths, tempDepths, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 | car, dirs, prjs, ptPrjDepths, ndir // halfspace | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | ); | ~ DKnn.cpp:64:18: note: ‘ptPrjDepths’ was declared here 64 | TDMatrix ptPrjDepths; if (depthType == 1) ptPrjDepths = newM(ndir, 1); | ^~~~~~~~~~~ DKnn.cpp:76:28: warning: ‘prjs’ may be used uninitialized [-Wmaybe-uninitialized] 76 | CountDepths(reflected, learnlabels, nlearn * 2, d, learnpoints, nlearn, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 | depthType, depths, tempDepths, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 | car, dirs, prjs, ptPrjDepths, ndir // halfspace | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | ); | ~ DKnn.cpp:63:18: note: ‘prjs’ was declared here 63 | TDMatrix prjs; if (depthType == 1) prjs = newM(ndir, nlearn * 2); | ^~~~ DKnn.cpp:76:28: warning: ‘dirs’ may be used uninitialized [-Wmaybe-uninitialized] 76 | CountDepths(reflected, learnlabels, nlearn * 2, d, learnpoints, nlearn, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 | depthType, depths, tempDepths, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 | car, dirs, prjs, ptPrjDepths, ndir // halfspace | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | ); | ~ DKnn.cpp:62:18: note: ‘dirs’ was declared here 62 | TDMatrix dirs; if (depthType == 1) dirs = newM(ndir, d); | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HD.cpp -o HD.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from HD.cpp:12: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Knn.cpp -o Knn.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from Knn.cpp:10: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LensDepth.cpp -o LensDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from LensDepth.cpp:15: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Mahalanobis.cpp -o Mahalanobis.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from Mahalanobis.cpp:2: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ Mahalanobis.cpp: In function ‘void MahalanobisDepth(TDMatrix, TDMatrix, int, int, int, double, double*)’: Mahalanobis.cpp:32:13: warning: unused variable ‘res’ [-Wunused-variable] 32 | int res = lu_factorize(A, pm); | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c OjaDepth.cpp -o OjaDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from OjaDepth.cpp:1: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Polynomial.cpp -o Polynomial.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from Polynomial.cpp:14: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ Polynomial.cpp: In function ‘TPoint PolynomialLearnCV(TDMatrix, int, int, int, int, int*, int*)’: Polynomial.cpp:396:25: warning: unused variable ‘tmp’ [-Wunused-variable] 396 | for (int i = 0, tmp; i < numPoints; i++){ input2[i][0] = input[i][1]; input2[i][1] = input[i][0]; } // swap columns | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PotentialDepth.cpp -o PotentialDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from PotentialDepth.cpp:1: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ PotentialDepth.cpp: In function ‘double EuclidianDistance(TPoint&, TPoint&)’: PotentialDepth.cpp:5:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5 | for (int i = 0; i < x.size(); i++){ | ~~^~~~~~~~~~ PotentialDepth.cpp: In function ‘double EuclidianDistance2(TPoint&, TPoint&)’: PotentialDepth.cpp:13:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13 | for (int i = 0; i< x.size(); i++){ | ~^~~~~~~~~~ PotentialDepth.cpp: In function ‘void PotentialDepths(TMatrix&, TVariables&, TMatrix&, TMatrix&, double (*)(TPoint&, TPoint&, double), double, int)’: PotentialDepth.cpp:60:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 60 | for (int i = 0; i < cardinalities.size(); classBeginning += cardinalities[i], i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~ PotentialDepth.cpp:67:60: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 67 | else if (classPointsDepths->size() < cardinalities[i]) PotentialDepth.cpp:76:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 76 | for (int p = 0; p < testpoints.size(); p++){ | ~~^~~~~~~~~~~~~~~~~~~ PotentialDepth.cpp:96:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int p = 0; p < testpoints.size(); p++){ | ~~^~~~~~~~~~~~~~~~~~~ PotentialDepth.cpp:65:25: warning: ‘classPointsDepths’ may be used uninitialized [-Wmaybe-uninitialized] 65 | if (!classPointsDepths) | ^~ PotentialDepth.cpp:56:17: note: ‘classPointsDepths’ was declared here 56 | TPoint* classPointsDepths; | ^~~~~~~~~~~~~~~~~ PotentialDepth.cpp:63:25: warning: ‘classPoints’ may be used uninitialized [-Wmaybe-uninitialized] 63 | if (classPoints) delete[] classPoints; | ^~ PotentialDepth.cpp:55:18: note: ‘classPoints’ was declared here 55 | TMatrix* classPoints; | ^~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ProjectionDepth.cpp -o ProjectionDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from ProjectionDepth.cpp:14: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ProjectionDepth.cpp:21:12: warning: ‘int CompareDec(OrderRec, OrderRec)’ defined but not used [-Wunused-function] 21 | static int CompareDec(OrderRec x, OrderRec y) | ^~~~~~~~~~ ProjectionDepth.cpp:16:12: warning: ‘int CompareAsc(OrderRec, OrderRec)’ defined but not used [-Wunused-function] 16 | static int CompareAsc(OrderRec x, OrderRec y) | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SimplicialDepth.cpp -o SimplicialDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from SimplicialDepth.cpp:2: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ SimplicialDepth.cpp: In function ‘void SimplicialDepthsEx(TDMatrix, TDMatrix, int, int, int, double*)’: SimplicialDepth.cpp:46:22: warning: unused variable ‘sc’ [-Wunused-variable] 46 | bool sc = numSimplicesChecked == div0; | ^~ SimplicialDepth.cpp: In function ‘long long unsigned int intSD2(double**, int)’: SimplicialDepth.cpp:153:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 153 | for (int i = nh; i < nn; i++) { | ~~^~~~ SimplicialDepth.cpp:154:27: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 154 | while ((j <= nh - 1) && (alpha[j] + M_PI <= alpha[i] - eps)) j++; | ~~^~~~~~~~~ In file included from /usr/include/string.h:548, from /usr/include/c++/14/cstring:43, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/core/bit.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/integer/integer_log2.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/detail/integer_log2.hpp:19, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/detail/large_arithmetic.hpp:19, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/detail/const_mod.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/random/linear_congruential.hpp:28, from stdafx.h:24: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘void SimplicialDepthsEx(TDMatrix, TDMatrix, int, int, int, double*)’ at SimplicialDepth.cpp:36:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ specified bound 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘void SimplicialDepthsApx(TDMatrix, TDMatrix, int, int, int, long long unsigned int, double*)’ at SimplicialDepth.cpp:98:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ specified bound 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TukeyDepth.cpp -o TukeyDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from TukeyDepth.cpp:14: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ZonoidDepth.cpp -o ZonoidDepth.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from ZonoidDepth.cpp:15: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ZonoidDepth.cpp: In function ‘double ZonoidDepth(std::vector >&, TPoint&, int&)’: ZonoidDepth.cpp:403:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 403 | if (x_sort.size() == n) { /* Allocation successful. */ | ~~~~~~~~~~~~~~^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c asa047.cpp -o asa047.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ddalpha.cpp -o ddalpha.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from ddalpha.cpp:14: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ ddalpha.cpp: In function ‘void AlphaLearn(double*, int*, int*, int*, int*, int*, double*)’: ddalpha.cpp:295:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 295 | for (int i = 0; i < direction.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~ ddalpha.cpp: In function ‘void AlphaLearnCV(double*, int*, int*, int*, int*, int*, int*, int*, double*)’: ddalpha.cpp:314:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 314 | for (int i = 0; i < direction.size(); i++){ | ~~^~~~~~~~~~~~~~~~~~ ddalpha.cpp: In function ‘void AlphaClassify(double*, int*, int*, int*, double*, int*)’: ddalpha.cpp:330:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 330 | for (int i = 0; i < _x[0].size(); i++){ | ~~^~~~~~~~~~~~~~ gfortran-14 -fpic -g -O2 -Wall -mtune=native -c depth.fd.f -o depth.fd.o depth.fd.f:308:6: 308 | double precision FUNCTION MAX(A,B) | 1 Warning: ‘max’ declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow] depth.fd.f:119:28: 119 | integer I,J,K,OM(NR),L | 1 Warning: Unused variable ‘l’ declared at (1) [-Wunused-variable] depth.fd.f:119:26: 119 | integer I,J,K,OM(NR),L | 1 Warning: Unused variable ‘om’ declared at (1) [-Wunused-variable] depth.fd.f:1182:25: 1182 | INTEGER hF(N),I,J,K | 1 Warning: Unused variable ‘k’ declared at (1) [-Wunused-variable] depth.fd.f:1216:25: 1216 | INTEGER hF(N),I,J,K | 1 Warning: Unused variable ‘k’ declared at (1) [-Wunused-variable] depth.fd.f:241:24: 241 | INTEGER FUNCTION K(M,J) | ^ Warning: ‘__result_k’ may be used uninitialized [-Wmaybe-uninitialized] gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stdafx.cpp -o stdafx.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_optimization.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array_wrapper.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/serialization/array.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:22, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/matrix.hpp:18, from stdafx.h:21, from stdafx.cpp:5: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from stdafx.h:15: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ddalpha.so AlphaProcedure.o BandDepth.o Common.o DKnn.o HD.o Knn.o LensDepth.o Mahalanobis.o OjaDepth.o Polynomial.o PotentialDepth.o ProjectionDepth.o SimplicialDepth.o TukeyDepth.o ZonoidDepth.o asa047.o ddalpha.o depth.fd.o init.o stdafx.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphpzeCd/R.INSTALL30de182e65220b/ddalpha/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ddalpha/00new/ddalpha/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ddalpha) begin installing package ‘Anthropometry’ * installing *source* package ‘ipumsr’ ... ** package ‘ipumsr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ipumsr) * installing *source* package ‘Anthropometry’ ... ** package ‘Anthropometry’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJrBpQL/R.INSTALL30ff87171136b3/Anthropometry/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cast.c -o cast.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Anthropometry.so cast.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJrBpQL/R.INSTALL30ff87171136b3/Anthropometry/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Anthropometry/00new/Anthropometry/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Anthropometry) * installing *source* package ‘evgam’ ... ** package ‘evgam’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLnDyzc/R.INSTALL30de4876c0c7fe/evgam/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c aldC.cpp -o aldC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exiC.cpp -o exiC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c expC.cpp -o expC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c extras.cpp -o extras.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gaussC.cpp -o gaussC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gevC.cpp -o gevC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gevaggC.cpp -o gevaggC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gevcC.cpp -o gevcC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gpdC.cpp -o gpdC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gpdcC.cpp -o gpdcC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gradHess.cpp -o gradHess.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ppC.cpp -o ppC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ppexiC.cpp -o ppexiC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c weibC.cpp -o weibC.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o evgam.so RcppExports.o aldC.o exiC.o expC.o extras.o gaussC.o gevC.o gevaggC.o gevcC.o gpdC.o gpdcC.o gradHess.o ppC.o ppexiC.o weibC.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLnDyzc/R.INSTALL30de4876c0c7fe/evgam/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-evgam/00new/evgam/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evgam) begin installing package ‘ftsa’ * installing *source* package ‘lcmm’ ... ** package ‘lcmm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplPPHaJ/R.INSTALL30eb0378ca8a17/lcmm/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runiran.c -o runiran.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c compute.f90 -o compute.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c hetmixOrd.f90 -o hetmixOrd.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c hetmixlin.f90 -o hetmixlin.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c hetmixCont.f90 -o hetmixCont.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c Jointhet.f90 -o Jointhet.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c calculusTransfo.f90 -o calculusTransfo.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c predictCont.f90 -o predictCont.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c predictMult.f90 -o predictMult.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c postprob2.f90 -o postprob2.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c cvpl.f90 -o cvpl.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c predictYcond.f90 -o predictYcond.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c mpjhet.f90 -o mpjhet.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c hetmixMult.f90 -o hetmixMult.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c iteminfo.f90 -o iteminfo.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o lcmm.so init.o runiran.o compute.o hetmixOrd.o hetmixlin.o hetmixCont.o Jointhet.o calculusTransfo.o predictCont.o predictMult.o postprob2.o cvpl.o predictYcond.o mpjhet.o hetmixMult.o iteminfo.o -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplPPHaJ/R.INSTALL30eb0378ca8a17/lcmm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lcmm/00new/lcmm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lcmm) * installing *source* package ‘ftsa’ ... ** package ‘ftsa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ftsa) * installing *source* package ‘Rdimtools’ ... ** package ‘Rdimtools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoGPq3Y/R.INSTALL30fe905d1784e/Rdimtools/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Rdimtools_auxiliary.cpp -o Rdimtools_auxiliary.o Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab(const arma::mat&, const arma::colvec&, arma::colvec&, double, int, const arma::mat&)’: Rdimtools_auxiliary.cpp:652:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable] 652 | double resid = 0; | ^~~~~ Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab_sparse(arma::sp_mat, arma::sp_mat, arma::colvec&, double, int, arma::sp_mat)’: Rdimtools_auxiliary.cpp:769:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable] 769 | double resid = 0; | ^~~~~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c example_class.cpp -o example_class.o example_class.cpp: In member function ‘arma::mat ClNLproc::MainFunc(arma::mat&)’: example_class.cpp:31:9: warning: unused variable ‘N’ [-Wunused-variable] 31 | int N = X.n_rows; | ^ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_estimation.cpp -o methods_estimation.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_handytools.cpp -o methods_handytools.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_linear.cpp -o methods_linear.o methods_linear.cpp: In function ‘arma::vec method_spufs(arma::mat&, arma::mat, double, double, double)’: methods_linear.cpp:780:13: warning: unused variable ‘n’ [-Wunused-variable] 780 | const int n = X.n_rows; | ^ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c methods_nonlinear.cpp -o methods_nonlinear.o methods_nonlinear.cpp: In function ‘Rcpp::List main_bmds(arma::mat, arma::mat, double, double, double, int, double, bool, arma::vec)’: methods_nonlinear.cpp:836:7: warning: unused variable ‘accept’ [-Wunused-variable] 836 | int accept = 0; | ^~~~~~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_computation.cpp -o ver1_computation.o ver1_computation.cpp: In function ‘arma::mat v2aux_pca(arma::mat&, int)’: ver1_computation.cpp:12:7: warning: unused variable ‘P’ [-Wunused-variable] 12 | int P = X.n_cols; | ^ ver1_computation.cpp: In function ‘arma::mat v2aux_pdist(arma::mat&)’: ver1_computation.cpp:30:7: warning: unused variable ‘P’ [-Wunused-variable] 30 | int P = X.n_cols; | ^ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_feature.cpp -o ver1_feature.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_linear.cpp -o ver1_linear.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_nonlinear.cpp -o ver1_nonlinear.o ver1_nonlinear.cpp: In function ‘Rcpp::List dt_mmds(arma::mat&, int, int, double)’: ver1_nonlinear.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 98 | if ((ndim < 1)||(ndim >= X.n_cols)){ | ~~~~~^~~~~~~~~~~ ver1_nonlinear.cpp:97:7: warning: unused variable ‘P’ [-Wunused-variable] 97 | int P = X.n_cols; | ^ ver1_nonlinear.cpp: In function ‘Rcpp::List dt_rpca(arma::mat&, double, double, int, double)’: ver1_nonlinear.cpp:394:7: warning: unused variable ‘N’ [-Wunused-variable] 394 | int N = X.n_rows; | ^ ver1_nonlinear.cpp:395:7: warning: unused variable ‘P’ [-Wunused-variable] 395 | int P = X.n_cols; | ^ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ver1_utility.cpp -o ver1_utility.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Rdimtools.so RcppExports.o Rdimtools_auxiliary.o example_class.o methods_estimation.o methods_handytools.o methods_linear.o methods_nonlinear.o ver1_computation.o ver1_feature.o ver1_linear.o ver1_nonlinear.o ver1_utility.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoGPq3Y/R.INSTALL30fe905d1784e/Rdimtools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rdimtools/00new/Rdimtools/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdimtools) * installing *source* package ‘bssm’ ... ** package ‘bssm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnXff44/R.INSTALL30f812223b0606/bssm/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_approx.cpp -o R_approx.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_bootstrap_filter.cpp -o R_bootstrap_filter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_ekf.cpp -o R_ekf.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_ekpf.cpp -o R_ekpf.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_iact.cpp -o R_iact.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_importance_sample.cpp -o R_importance_sample.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_kfilter.cpp -o R_kfilter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_loglik.cpp -o R_loglik.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_mcmc.cpp -o R_mcmc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_milstein.cpp -o R_milstein.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_postcorrection.cpp -o R_postcorrection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_predict.cpp -o R_predict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_predict_past.cpp -o R_predict_past.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_psi.cpp -o R_psi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_sde.cpp -o R_sde.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_sde_state_sampler.cpp -o R_sde_state_sampler.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_smoother.cpp -o R_smoother.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_ukf.cpp -o R_ukf.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c approx_mcmc.cpp -o approx_mcmc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c conditional_dist.cpp -o conditional_dist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c distr_consts.cpp -o distr_consts.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c dmvnorm.cpp -o dmvnorm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c filter_smoother.cpp -o filter_smoother.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mcmc.cpp -o mcmc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c milstein.cpp -o milstein.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ar1_lg.cpp -o model_ar1_lg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ar1_ng.cpp -o model_ar1_ng.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_bsm_lg.cpp -o model_bsm_lg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_bsm_ng.cpp -o model_bsm_ng.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ssm_mlg.cpp -o model_ssm_mlg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ssm_mng.cpp -o model_ssm_mng.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ssm_nlg.cpp -o model_ssm_nlg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ssm_sde.cpp -o model_ssm_sde.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ssm_ulg.cpp -o model_ssm_ulg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_ssm_ung.cpp -o model_ssm_ung.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_svm.cpp -o model_svm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c parset_lg.cpp -o parset_lg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c parset_ng.cpp -o parset_ng.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c psd_chol.cpp -o psd_chol.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rep_mat.cpp -o rep_mat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c stratified_sample.cpp -o stratified_sample.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/ramcmc/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c summary.cpp -o summary.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o bssm.so R_approx.o R_bootstrap_filter.o R_ekf.o R_ekpf.o R_iact.o R_importance_sample.o R_kfilter.o R_loglik.o R_mcmc.o R_milstein.o R_postcorrection.o R_predict.o R_predict_past.o R_psi.o R_sde.o R_sde_state_sampler.o R_smoother.o R_ukf.o RcppExports.o approx_mcmc.o conditional_dist.o distr_consts.o dmvnorm.o filter_smoother.o mcmc.o milstein.o model_ar1_lg.o model_ar1_ng.o model_bsm_lg.o model_bsm_ng.o model_ssm_mlg.o model_ssm_mng.o model_ssm_nlg.o model_ssm_sde.o model_ssm_ulg.o model_ssm_ung.o model_svm.o parset_lg.o parset_ng.o psd_chol.o rep_mat.o stratified_sample.o summary.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnXff44/R.INSTALL30f812223b0606/bssm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bssm/00new/bssm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bssm) checking fda_6.2.0.tar.gz ... checking adass_1.0.1.tar.gz ... checking absorber_1.0.tar.gz ... checking anacor_1.1-4.tar.gz ... checking CCA_1.2.2.tar.gz ... checking cfda_0.11.0.tar.gz ... checking clustEff_0.3.1.tar.gz ... checking CollocInfer_1.0.4.tar.gz ... checking conformalInference.fd_1.1.1.tar.gz ... checking ctmcmove_1.2.9.tar.gz ... checking ctmva_1.4.0.tar.gz ... checking cvmaPLFAM_0.1.0.tar.gz ... checking dfrr_0.1.5.tar.gz ... checking dynr_0.1.16-105.tar.gz ... checking Ecfun_0.3-2.tar.gz ... checking EBCHS_0.1.0.tar.gz ... checking ExtremalDep_0.0.4-1.tar.gz ... checking FADPclust_1.1.1.tar.gz ... checking fda.usc_2.1.0.tar.gz ... checking fdaACF_1.0.0.tar.gz ... checking fdaMocca_0.1-1.tar.gz ... checking fdANOVA_0.1.2.tar.gz ... checking fdatest_2.1.1.tar.gz ... checking freqdom.fda_1.0.1.tar.gz ... checking ftsa_6.4.tar.gz ... checking funcharts_1.5.0.tar.gz ... checking FuncNN_1.0.tar.gz ... checking FunctanSNP_0.1.0.tar.gz ... checking MRmediation_1.0.1.tar.gz ... checking KFPLS_1.0.tar.gz ... checking pCODE_0.9.4.tar.gz ... checking funLBM_2.3.tar.gz ... checking sde_2.0.18.tar.gz ... checking logitFD_1.0.tar.gz ... checking longsurr_1.0.tar.gz ... checking pencopulaCond_0.2.tar.gz ... checking funpca_9.0.tar.gz ... checking glober_1.0.tar.gz ... checking srp_1.2.0.tar.gz ... checking funkycells_1.1.1.tar.gz ... checking PerFit_1.4.6.tar.gz ... checking KFPCA_2.0.tar.gz ... checking nFunNN_1.0.tar.gz ... checking GPFDA_3.1.3.tar.gz ... checking PupillometryR_0.0.5.tar.gz ... checking mar1s_2.1.1.tar.gz ... checking pendensity_0.2.13.tar.gz ... checking pfica_0.1.3.tar.gz ... checking quantreg.nonpar_1.0.tar.gz ... checking Rfssa_3.1.0.tar.gz ... checking slasso_1.0.0.tar.gz ... checking TestGardener_3.3.3.tar.gz ... checking multiFANOVA_0.1.0.tar.gz ... checking TimeVarConcurrentModel_1.0.tar.gz ... checking ir_0.2.1.tar.gz ... checking SCCS_1.7.tar.gz ... checking robCompositions_2.4.1.tar.gz ... checking mxnorm_1.0.3.tar.gz ... checking puls_0.1.2.tar.gz ... checking trackeR_1.6.0.tar.gz ... checking SLFPCA_3.0.tar.gz ... checking robflreg_1.2.tar.gz ... checking wwntests_1.1.0.tar.gz ... checking SpatFD_0.0.1.tar.gz ... checking mrct_0.0.1.0.tar.gz ... checking QZ_0.2-3.tar.gz ... checking PFLR_1.1.0.tar.gz ... checking fdacluster_0.3.0.tar.gz ... checking TrendTM_2.0.19.tar.gz ... checking MFPCA_1.3-10.tar.gz ... checking stfit_0.99.9.tar.gz ... checking DepthProc_2.1.5.tar.gz ... checking DrBats_0.1.6.tar.gz ... checking funFEM_1.2.tar.gz ... checking pcdpca_0.4.tar.gz ... checking warpMix_0.1.0.tar.gz ... checking hero_0.6.tar.gz ... checking runDRT_0.1.0.tar.gz ... checking TFunHDDC_1.0.1.tar.gz ... checking ReMFPCA_1.0.0.tar.gz ... checking LocKer_1.1.tar.gz ... checking gmtFD_0.1.0.tar.gz ... checking sft_2.2-1.tar.gz ... checking SpatialfdaR_1.0.0.tar.gz ... checking refund_0.1-35.tar.gz ... checking funData_1.3-9.tar.gz ... checking adamethods_1.2.1.tar.gz ... checking T4cluster_0.1.2.tar.gz ... checking fgm_1.0.tar.gz ... checking fMRItools_0.4.7.tar.gz ... checking latrend_1.6.1.tar.gz ... checking Rsfar_0.0.1.tar.gz ... checking TSCI_3.0.4.tar.gz ... checking GET_1.0-3.tar.gz ... checking freqdom_2.0.5.tar.gz ... checking sasfunclust_1.0.0.tar.gz ... checking FDboost_1.1-2.tar.gz ... checking ggdist_3.3.2.tar.gz ... Depends: Package: fda Depends: R (>= 3.5), splines, fds, deSolve Timings: user system elapsed fda 211.998 8.751 222.54 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 40 57 Check results summary: fda ... NOTE * checking examples ... [41s/41s] NOTE rdepends_absorber ... OK rdepends_adamethods ... NOTE * checking LazyData ... NOTE rdepends_adass ... OK rdepends_anacor ... OK rdepends_CCA ... OK rdepends_cfda ... NOTE * checking Rd cross-references ... NOTE rdepends_clustEff ... OK rdepends_CollocInfer ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_conformalInference.fd ... OK rdepends_ctmcmove ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_ctmva ... OK rdepends_cvmaPLFAM ... OK rdepends_DepthProc ... NOTE * checking C++ specification ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_dfrr ... OK rdepends_DrBats ... OK rdepends_dynr ... NOTE * checking Rd cross-references ... NOTE rdepends_EBCHS ... OK rdepends_Ecfun ... NOTE * checking Rd files ... [1s/1s] NOTE * checking Rd cross-references ... NOTE rdepends_ExtremalDep ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_FADPclust ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_fda.usc ... NOTE * checking Rd files ... [2s/3s] NOTE * checking Rd cross-references ... NOTE * checking HTML version of manual ... [10s/10s] NOTE rdepends_fdaACF ... OK rdepends_fdacluster ... OK rdepends_fdaMocca ... OK rdepends_fdANOVA ... OK rdepends_fdatest ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_FDboost ... NOTE * checking Rd cross-references ... NOTE rdepends_fgm ... NOTE * checking LazyData ... NOTE rdepends_fMRItools ... OK rdepends_freqdom.fda ... NOTE * checking Rd cross-references ... NOTE rdepends_freqdom ... OK rdepends_ftsa ... NOTE * checking Rd cross-references ... NOTE rdepends_funcharts ... OK rdepends_FuncNN ... OK rdepends_FunctanSNP ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_funData ... OK rdepends_funFEM ... OK rdepends_funkycells ... OK rdepends_funLBM ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_funpca ... OK rdepends_GET ... OK rdepends_ggdist ... NOTE * checking Rd cross-references ... NOTE rdepends_glober ... OK rdepends_gmtFD ... OK rdepends_GPFDA ... OK rdepends_hero ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_ir ... NOTE * checking Rd files ... [3s/3s] NOTE rdepends_KFPCA ... OK rdepends_KFPLS ... OK rdepends_latrend ... NOTE * checking Rd cross-references ... NOTE rdepends_LocKer ... OK rdepends_logitFD ... OK rdepends_longsurr ... OK rdepends_mar1s ... OK rdepends_MFPCA ... NOTE * checking Rd cross-references ... NOTE rdepends_mrct ... OK rdepends_MRmediation ... OK rdepends_multiFANOVA ... OK rdepends_mxnorm ... OK rdepends_nFunNN ... OK rdepends_pcdpca ... NOTE * checking Rd cross-references ... NOTE * checking LazyData ... NOTE rdepends_pCODE ... OK rdepends_pencopulaCond ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_pendensity ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_PerFit ... NOTE * checking Rd cross-references ... NOTE rdepends_pfica ... OK rdepends_PFLR ... OK rdepends_puls ... NOTE * checking Rd cross-references ... NOTE rdepends_PupillometryR ... OK rdepends_quantreg.nonpar ... OK rdepends_QZ ... OK rdepends_refund ... NOTE * checking Rd cross-references ... NOTE rdepends_ReMFPCA ... OK rdepends_Rfssa ... NOTE * checking Rd cross-references ... NOTE rdepends_robCompositions ... NOTE * checking Rd files ... [2s/2s] NOTE rdepends_robflreg ... OK rdepends_Rsfar ... OK rdepends_runDRT ... OK rdepends_sasfunclust ... NOTE * checking C++ specification ... NOTE rdepends_SCCS ... OK rdepends_sde ... NOTE * checking compiled code ... NOTE rdepends_sft ... NOTE * checking Rd cross-references ... NOTE rdepends_slasso ... NOTE * checking C++ specification ... NOTE rdepends_SLFPCA ... OK rdepends_SpatFD ... OK rdepends_SpatialfdaR ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_srp ... OK rdepends_stfit ... OK rdepends_T4cluster ... NOTE * checking C++ specification ... NOTE rdepends_TestGardener ... NOTE * checking Rd cross-references ... NOTE rdepends_TFunHDDC ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_TimeVarConcurrentModel ... OK rdepends_trackeR ... NOTE * checking Rd cross-references ... NOTE rdepends_TrendTM ... OK rdepends_TSCI ... OK rdepends_warpMix ... NOTE * checking LazyData ... NOTE rdepends_wwntests ... OK