* using log directory ‘/srv/hornik/tmp/CRAN_pretest/fda.usc.Rcheck’ * using R Under development (unstable) (2024-10-28 r87274) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘fda.usc/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fda.usc’ version ‘2.2.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [6s/8s] NOTE Maintainer: ‘Manuel Oviedo de la Fuente ’ Package has a VignetteBuilder field but no prebuilt vignette index. The BugReports field in DESCRIPTION has https://github.com/moviedo5/fda.usc which should likely be https://github.com/moviedo5/fda.usc/issues instead. * checking package namespace information ... OK * checking package dependencies ... INFO Vignette dependency required without any vignettes: ‘knitr’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fda.usc’ can be installed ... [19s/19s] OK * used C compiler: ‘Debian clang version 19.1.2 (1)’ * used Fortran compiler: ‘Debian flang-new version 19.1.2 (1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [47s/47s] OK * checking Rd files ... [1s/1s] NOTE checkRd: (-1) LMDC.select.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) LMDC.select.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Outliers.fdata.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) Outliers.fdata.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) Outliers.fdata.Rd:85: Lost braces 85 | Febrero-Bande, M., Galeano, P., and Gonzalez-Manteiga, W. (2008). \emph{Outlier detection in functional data by depth measures with application to identify abnormal NOx levels}. Environmetrics 19, 4, 331{-}345. | ^ checkRd: (-1) accuracy.Rd:47: Lost braces 47 | \item \code{recall}: \code{sensitivity,TPrate}{ \eqn{R=TP/(TP+FN)}}. | ^ checkRd: (-1) accuracy.Rd:49: Lost braces 49 | \item \code{specificity}: \code{TNrate}{ \eqn{TN/(TN+FP)}}. | ^ checkRd: (-1) classif.DD.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.DD.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.DD.Rd:82: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.DD.Rd:83: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.DD.Rd:84: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.DD.Rd:88-90: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.DD.Rd:91: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.DD.Rd:92-93: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.depth.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.depth.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) classif.depth.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) cond.mode.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) cond.mode.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) cond.mode.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mdata.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mdata.Rd:73-74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mdata.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mdata.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mdata.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mdata.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mdata.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:107: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:108: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) depth.mfdata.Rd:190: Lost braces 190 | 10: 419{-}440. %Febrero-Bande, M., Oviedo de la Fuente, M. (2012). | ^ checkRd: (-1) dfv.test.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) dfv.test.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fEqDistrib.test.Rd:75: Lost braces 75 | \item {\code{XYRP.test}}:{ \code{FDR.pv}: p-value using FDR, \code{proj.pv}: Matrix of p-values obtained for projections.} | ^ checkRd: (-1) fEqDistrib.test.Rd:76: Lost braces 76 | \item {\code{MMD.test},\code{MMDA.test}}: {\code{stat}: Statistic, \code{p.value}: p-value, \code{thresh}: Threshold at level \code{alpha}.} | ^ checkRd: (-1) fEqDistrib.test.Rd:77-78: Lost braces 77 | \item {\code{fEqDistrib.test}}: { \code{result}: \code{data.frame} with columns \code{Stat} and \code{p.value}, | ^ checkRd: (-1) fEqMoments.test.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fEqMoments.test.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fEqMoments.test.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fEqMoments.test.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fEqMoments.test.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:49: Lost braces 49 | \item{pr}{code{logical}. If \code{TRUE} prints intermediate results.} | ^ checkRd: (-1) fanova.RPm.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:71-72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:73-75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:76-77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:78-79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:82-83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.RPm.Rd:84-85: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.hetero.Rd:27-29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.hetero.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fanova.onefactor.Rd:34: Lost braces 34 | \item \code{stat}{ statistic value of test.} | ^ checkRd: (-1) fanova.onefactor.Rd:35: Lost braces 35 | \item \code{wm}{ statistic values of bootstrap resamples.} | ^ checkRd: (-1) fdata.bootstrap.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata.bootstrap.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata.bootstrap.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata.bootstrap.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata.bootstrap.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2basis.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2basis.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2basis.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pc.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fdata2pls.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.Ftest.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.Ftest.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.Ftest.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.Ftest.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.Ftest.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.Ftest.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) flm.test.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.cv.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.cv.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.cv.Rd:58-59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.cv.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.cv.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.basis.fr.Rd:106: Lost braces 106 | linear differential operator; {\code{lambda.s},\code{Lfdobj.s}} for | ^ checkRd: (-1) fregre.basis.fr.Rd:108: Lost braces 108 | \cr {\code{lambda.t},\code{Lfdobj.t}} for penalization of | ^ checkRd: (-1) fregre.basis.fr.Rd:52: Lost braces 52 | \item \code{call}{ The matched call.} | ^ checkRd: (-1) fregre.basis.fr.Rd:53: Lost braces 53 | \item \code{a.est}{ Intercept parameter estimated.} | ^ checkRd: (-1) fregre.basis.fr.Rd:54: Lost braces 54 | \item \code{coefficientes}{ the matrix of the coefficients.} | ^ checkRd: (-1) fregre.basis.fr.Rd:55: Lost braces 55 | \item \code{beta.est}{ A bivariate functional data object of class \code{bifd} with the estimated parameters of \eqn{\beta(s,t)}{\beta(s,t)}.} | ^ checkRd: (-1) fregre.basis.fr.Rd:56: Lost braces 56 | \item \code{fitted.values}{ Estimated response.} | ^ checkRd: (-1) fregre.basis.fr.Rd:57: Lost braces 57 | \item \code{residuals}{ \code{y} minus \code{fitted values}.} | ^ checkRd: (-1) fregre.basis.fr.Rd:58: Lost braces 58 | \item \code{y}{ Functional response.} | ^ checkRd: (-1) fregre.basis.fr.Rd:59: Lost braces 59 | \item \code{x}{ Functional explanatory data.} | ^ checkRd: (-1) fregre.basis.fr.Rd:60: Lost braces 60 | \item \code{lambda.s}{ A roughness penalty with respect to \code{s} .} | ^ checkRd: (-1) fregre.basis.fr.Rd:61: Lost braces 61 | \item \code{lambda.t}{ A roughness penalty with respect to \code{t}.} | ^ checkRd: (-1) fregre.basis.fr.Rd:62: Lost braces 62 | \item \code{Lfdobj.s}{ A linear differential operator with respect to \code{s}.} | ^ checkRd: (-1) fregre.basis.fr.Rd:63: Lost braces 63 | \item \code{Lfdobj.t}{ A linear differential operator with respect to \code{t}.} | ^ checkRd: (-1) fregre.basis.fr.Rd:64: Lost braces 64 | \item \code{weights}{ Weights.} | ^ checkRd: (-1) fregre.bootstrap.Rd:59: Lost braces 59 | \item \code{model}{ \code{fregre.pc}, \code{fregre.pls} or \code{fregre.basis} object.} | ^ checkRd: (-1) fregre.bootstrap.Rd:60: Lost braces 60 | \item \code{beta.boot}{ functional beta estimated by the \code{nb} bootstrap regressions.} | ^ checkRd: (-1) fregre.bootstrap.Rd:61: Lost braces 61 | \item \code{norm.boot}{ norm of diferences beetween the nboot betas estimated by bootstrap and beta estimated by regression model.} | ^ checkRd: (-1) fregre.bootstrap.Rd:62: Lost braces 62 | \item \code{coefs.boot}{ matrix with the bootstrap estimated basis coefficients.} | ^ checkRd: (-1) fregre.bootstrap.Rd:63-64: Lost braces 63 | \item \code{kn.boot}{ vector or list of length \code{nb} with index of the basis, PC or PLS factors selected in each bootstrap | ^ checkRd: (-1) fregre.bootstrap.Rd:65: Lost braces 65 | \item \code{y.pred}{ predicted response values using \code{newX} covariates.} | ^ checkRd: (-1) fregre.bootstrap.Rd:66: Lost braces 66 | \item \code{y.boot}{ matrix of bootstrap predicted response values using \code{newX} covariates.} | ^ checkRd: (-1) fregre.bootstrap.Rd:67-68: Lost braces 67 | \item \code{newX}{ a \code{fdata} class containing the values of the model covariates at which predictions are required (only | ^ checkRd: (-1) fregre.gkam.Rd:52: Lost braces 52 | \item \code{result:}{ List of non-parametric estimation by covariate.} | ^ checkRd: (-1) fregre.gkam.Rd:53: Lost braces 53 | \item \code{fitted.values:}{ Estimated scalar response.} | ^ checkRd: (-1) fregre.gkam.Rd:54: Lost braces 54 | \item \code{residuals:}{ \code{y} minus \code{fitted values}.} | ^ checkRd: (-1) fregre.gkam.Rd:55: Lost braces 55 | \item \code{effects:}{ The residual degrees of freedom.} | ^ checkRd: (-1) fregre.gkam.Rd:56: Lost braces 56 | \item \code{alpha:}{ Hat matrix.} | ^ checkRd: (-1) fregre.gkam.Rd:57: Lost braces 57 | \item \code{family:}{ Coefficient of determination.} | ^ checkRd: (-1) fregre.gkam.Rd:58: Lost braces 58 | \item \code{linear.predictors:}{ Residual variance.} | ^ checkRd: (-1) fregre.gkam.Rd:59: Lost braces 59 | \item \code{deviance:}{ Scalar response.} | ^ checkRd: (-1) fregre.gkam.Rd:60: Lost braces 60 | \item \code{aic:}{ Functional explanatory data.} | ^ checkRd: (-1) fregre.gkam.Rd:61: Lost braces 61 | \item \code{null.deviance:}{ Non functional explanatory data.} | ^ checkRd: (-1) fregre.gkam.Rd:62: Lost braces; missing escapes or markup? 62 | \item \code{iter}:{ Distance matrix between curves.} | ^ checkRd: (-1) fregre.gkam.Rd:63: Lost braces 63 | \item \code{w:}{ beta coefficient estimated} | ^ checkRd: (-1) fregre.gkam.Rd:64: Lost braces 64 | \item \code{eqrank:}{ List that containing the variables in the model.} | ^ checkRd: (-1) fregre.gkam.Rd:65: Lost braces 65 | \item \code{prior.weights:}{ Asymmetric kernel used.} | ^ checkRd: (-1) fregre.gkam.Rd:66: Lost braces 66 | \item \code{y:}{ Scalar response.} | ^ checkRd: (-1) fregre.gkam.Rd:67: Lost braces 67 | \item \code{H:}{ Hat matrix, see Opsomer and Ruppert(1997) for more details.} | ^ checkRd: (-1) fregre.gkam.Rd:68: Lost braces 68 | \item \code{converged:}{ conv.} | ^ checkRd: (-1) fregre.glm.Rd:44: Lost braces 44 | \item \code{basis.x}{ Basis used for \code{fdata} or \code{fd} covariates.} | ^ checkRd: (-1) fregre.glm.Rd:45: Lost braces 45 | \item \code{basis.b}{ Basis used for beta parameter estimation.} | ^ checkRd: (-1) fregre.glm.Rd:46: Lost braces 46 | \item \code{beta.l}{ List of estimated beta parameter of functional covariates.} | ^ checkRd: (-1) fregre.glm.Rd:47: Lost braces 47 | \item \code{data}{ List that containing the variables in the model.} | ^ checkRd: (-1) fregre.glm.Rd:48: Lost braces 48 | \item \code{formula}{ formula.} | ^ checkRd: (-1) fregre.gls.Rd:88: Lost braces 88 | \item \code{sr2:}{ Residual variance.} | ^ checkRd: (-1) fregre.gls.Rd:89: Lost braces 89 | \item \code{Vp:}{ Estimated covariance matrix for the parameters.} | ^ checkRd: (-1) fregre.gls.Rd:90: Lost braces 90 | \item \code{lambda:}{ A roughness penalty.} | ^ checkRd: (-1) fregre.gls.Rd:91: Lost braces 91 | \item \code{basis.x:}{ Basis used for \code{fdata} or \code{fd} covariates.} | ^ checkRd: (-1) fregre.gls.Rd:92: Lost braces 92 | \item \code{basis.b:}{ Basis used for beta parameter estimation.} | ^ checkRd: (-1) fregre.gls.Rd:93: Lost braces 93 | \item \code{beta.l:}{ List of estimated beta parameter of functional covariates.} | ^ checkRd: (-1) fregre.gls.Rd:94: Lost braces 94 | \item \code{data:}{ List that containing the variables in the model.} | ^ checkRd: (-1) fregre.gls.Rd:95: Lost braces 95 | \item \code{formula:}{ formula used in ajusted model.} | ^ checkRd: (-1) fregre.gls.Rd:96: Lost braces 96 | \item \code{formula.ini:}{ formula in call.} | ^ checkRd: (-1) fregre.gls.Rd:97: Lost braces 97 | \item \code{W:}{ inverse of covariance matrix} | ^ checkRd: (-1) fregre.gls.Rd:98: Lost braces 98 | \item \code{correlation:}{ See glsObject for the components of the fit. } | ^ checkRd: (-1) fregre.gsam.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.gsam.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.gsam.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.gsam.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.gsam.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.igls.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.lm.Rd:43: Lost braces 43 | \item \code{sr2}{ Residual variance.} | ^ checkRd: (-1) fregre.lm.Rd:44: Lost braces 44 | \item \code{Vp}{ Estimated covariance matrix for the parameters.} | ^ checkRd: (-1) fregre.lm.Rd:45: Lost braces 45 | \item \code{lambda}{ A roughness penalty.} | ^ checkRd: (-1) fregre.lm.Rd:46: Lost braces 46 | \item \code{basis.x}{ Basis used for \code{fdata} or \code{fd} covariates.} | ^ checkRd: (-1) fregre.lm.Rd:47: Lost braces 47 | \item \code{basis.b}{ Basis used for beta parameter estimation.} | ^ checkRd: (-1) fregre.lm.Rd:48: Lost braces 48 | \item \code{beta.l}{ List of estimated beta parameter of functional covariates.} | ^ checkRd: (-1) fregre.lm.Rd:49: Lost braces 49 | \item \code{data}{ List that containing the variables in the model.} | ^ checkRd: (-1) fregre.lm.Rd:50: Lost braces 50 | \item \code{formula}{ formula.} | ^ checkRd: (-1) fregre.np.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fregre.np.cv.Rd:52: Lost braces 52 | \item \code{call}{ The matched call.} | ^ checkRd: (-1) fregre.np.cv.Rd:53: Lost braces 53 | \item \code{residuals}{ \code{y} minus \code{fitted values}.} | ^ checkRd: (-1) fregre.np.cv.Rd:54: Lost braces 54 | \item \code{fitted.values}{ Estimated scalar response.} | ^ checkRd: (-1) fregre.np.cv.Rd:55: Lost braces 55 | \item \code{df.residual}{ The residual degrees of freedom.} | ^ checkRd: (-1) fregre.np.cv.Rd:56: Lost braces 56 | \item \code{r2}{ Coefficient of determination.} | ^ checkRd: (-1) fregre.np.cv.Rd:57: Lost braces 57 | \item \code{sr2}{ Residual variance.} | ^ checkRd: (-1) fregre.np.cv.Rd:58: Lost braces 58 | \item \code{H}{ Hat matrix.} | ^ checkRd: (-1) fregre.np.cv.Rd:59: Lost braces 59 | \item \code{y}{ Response.} | ^ checkRd: (-1) fregre.np.cv.Rd:60: Lost braces 60 | \item \code{fdataobj}{ Functional explanatory data.} | ^ checkRd: (-1) fregre.np.cv.Rd:61: Lost braces 61 | \item \code{mdist}{ Distance matrix between \code{x} and \code{newx}.} | ^ checkRd: (-1) fregre.np.cv.Rd:62: Lost braces 62 | \item \code{Ker}{ Asymmetric kernel used.} | ^ checkRd: (-1) fregre.np.cv.Rd:63: Lost braces 63 | \item \code{gcv}{ CV or GCV values.} | ^ checkRd: (-1) fregre.np.cv.Rd:64: Lost braces 64 | \item \code{h.opt}{ smoothing parameter or bandwidth that minimizes CV or GCV method.} | ^ checkRd: (-1) fregre.np.cv.Rd:65: Lost braces 65 | \item \code{h}{ Vector of smoothing parameter or bandwidth.} | ^ checkRd: (-1) fregre.np.cv.Rd:66: Lost braces 66 | \item \code{cv}{ List with the fitted values and residuals estimated by CV, without the same curve.} | ^ checkRd: (-1) fregre.pc.Rd:41: Lost braces 41 | \item \code{call}{ The matched call of \code{\link{fregre.pc}} function.} | ^ checkRd: (-1) fregre.pc.Rd:42: Lost braces 42 | \item \code{coefficients}{ A named vector of coefficients.} | ^ checkRd: (-1) fregre.pc.Rd:43: Lost braces 43 | \item \code{residuals}{ \code{y}-\code{fitted values}.} | ^ checkRd: (-1) fregre.pc.Rd:44: Lost braces 44 | \item \code{fitted.values}{ Estimated scalar response.} | ^ checkRd: (-1) fregre.pc.Rd:45: Lost braces 45 | \item \code{beta.est}{ beta coefficient estimated of class \code{fdata}} | ^ checkRd: (-1) fregre.pc.Rd:46: Lost braces 46 | \item \code{df.residual}{ The residual degrees of freedom. In ridge regression, \code{df(rn)} is the effective degrees of freedom.} | ^ checkRd: (-1) fregre.pc.Rd:47: Lost braces 47 | \item \code{r2}{ Coefficient of determination.} | ^ checkRd: (-1) fregre.pc.Rd:48: Lost braces 48 | \item \code{sr2}{ Residual variance.} | ^ checkRd: (-1) fregre.pc.Rd:49: Lost braces 49 | \item \code{Vp}{ Estimated covariance matrix for the parameters.} | ^ checkRd: (-1) fregre.pc.Rd:50: Lost braces 50 | \item \code{H}{ Hat matrix.} | ^ checkRd: (-1) fregre.pc.Rd:51: Lost braces 51 | \item \code{l}{ Index of principal components selected.} | ^ checkRd: (-1) fregre.pc.Rd:52: Lost braces 52 | \item \code{lambda}{ Amount of shrinkage.} | ^ checkRd: (-1) fregre.pc.Rd:53: Lost braces 53 | \item \code{P}{ Penalty matrix.} | ^ checkRd: (-1) fregre.pc.Rd:54: Lost braces 54 | \item \code{fdata.comp}{ Fitted object in \code{\link{fdata2pc}} function.} | ^ checkRd: (-1) fregre.pc.Rd:55: Lost braces 55 | \item \code{lm}{ \code{lm} object.} | ^ checkRd: (-1) fregre.pc.Rd:56: Lost braces 56 | \item \code{fdataobj}{ Functional explanatory data.} | ^ checkRd: (-1) fregre.pc.Rd:57: Lost braces 57 | \item \code{y}{ Scalar response.} | ^ checkRd: (-1) fregre.pc.cv.Rd:47: Lost braces 47 | \item \code{fregre.pc}{ Fitted regression object by the best (\code{pc.opt}) components.} | ^ checkRd: (-1) fregre.pc.cv.Rd:48: Lost braces 48 | \item \code{pc.opt}{ Index of PC components selected.} | ^ checkRd: (-1) fregre.pc.cv.Rd:49: Lost braces 49 | \item \code{MSC.min}{ Minimum Model Selection Criteria (MSC) value for the (\code{pc.opt} components.} | ^ checkRd: (-1) fregre.pc.cv.Rd:50: Lost braces 50 | \item \code{MSC}{ Minimum Model Selection Criteria (MSC) value for \code{kmax} components.} | ^ checkRd: (-1) fregre.plm.Rd:51: Lost braces 51 | \item \code{call}{ The matched call.} | ^ checkRd: (-1) fregre.plm.Rd:52: Lost braces 52 | \item \code{fitted.values}{ Estimated scalar response.} | ^ checkRd: (-1) fregre.plm.Rd:53: Lost braces 53 | \item \code{residuals}{ \code{y} minus \code{fitted values}.} | ^ checkRd: (-1) fregre.plm.Rd:54: Lost braces 54 | \item \code{df.residual}{ The residual degrees of freedom.} | ^ checkRd: (-1) fregre.plm.Rd:55: Lost braces 55 | \item \code{H}{ Hat matrix.} | ^ checkRd: (-1) fregre.plm.Rd:56: Lost braces 56 | \item \code{r2}{ Coefficient of determination.} | ^ checkRd: (-1) fregre.plm.Rd:57: Lost braces 57 | \item \code{sr2}{ Residual variance.} | ^ checkRd: (-1) fregre.plm.Rd:58: Lost braces 58 | \item \code{y}{ Scalar response.} | ^ checkRd: (-1) fregre.plm.Rd:59: Lost braces 59 | \item \code{fdataobj}{ Functional explanatory data.} | ^ checkRd: (-1) fregre.plm.Rd:60: Lost braces 60 | \item \code{XX}{ Non functional explanatory data.} | ^ checkRd: (-1) fregre.plm.Rd:61: Lost braces 61 | \item \code{mdist}{ Distance matrix between curves.} | ^ checkRd: (-1) fregre.plm.Rd:62: Lost braces 62 | \item \code{betah}{ beta coefficient estimated} | ^ checkRd: (-1) fregre.plm.Rd:63: Lost braces 63 | \item \code{data}{ List that containing the variables in the model.} | ^ checkRd: (-1) fregre.plm.Rd:64: Lost braces 64 | \item \code{Ker}{ Asymmetric kernel used.} | ^ checkRd: (-1) fregre.plm.Rd:65: Lost braces 65 | \item \code{h.opt}{ Value that minimizes CV or GCV method.} | ^ checkRd: (-1) fregre.plm.Rd:66: Lost braces 66 | \item \code{h}{ Smoothing parameter or bandwidth.} | ^ checkRd: (-1) fregre.plm.Rd:67-68: Lost braces 67 | \item \code{data}{ List that containing the | ^ checkRd: (-1) fregre.plm.Rd:69: Lost braces 69 | \item \code{gcv}{ GCV values.} | ^ checkRd: (-1) fregre.plm.Rd:70: Lost braces 70 | \item \code{formula}{ formula.} | ^ checkRd: (-1) fregre.pls.Rd:29: Lost braces 29 | \item \code{call}{ The matched call of \code{\link{fregre.pls}} function.} | ^ checkRd: (-1) fregre.pls.Rd:30: Lost braces 30 | \item \code{beta.est}{ Beta coefficient estimated of class \code{fdata}.} | ^ checkRd: (-1) fregre.pls.Rd:31: Lost braces 31 | \item \code{coefficients}{ A named vector of coefficients.} | ^ checkRd: (-1) fregre.pls.Rd:32: Lost braces 32 | \item \code{fitted.values}{ Estimated scalar response.} | ^ checkRd: (-1) fregre.pls.Rd:33: Lost braces 33 | \item \code{residuals}{\code{y}-\code{fitted values}.} | ^ checkRd: (-1) fregre.pls.Rd:34: Lost braces 34 | \item \code{H}{ Hat matrix.} | ^ checkRd: (-1) fregre.pls.Rd:35: Lost braces 35 | \item \code{df.residual}{ The residual degrees of freedom.} | ^ checkRd: (-1) fregre.pls.Rd:36: Lost braces 36 | \item \code{r2}{ Coefficient of determination.} | ^ checkRd: (-1) fregre.pls.Rd:37: Lost braces 37 | \item \code{GCV}{ GCV criterion.} | ^ checkRd: (-1) fregre.pls.Rd:38: Lost braces 38 | \item \code{sr2}{ Residual variance.} | ^ checkRd: (-1) fregre.pls.Rd:39: Lost braces 39 | \item \code{l}{ Index of components to include in the model.} | ^ checkRd: (-1) fregre.pls.Rd:40: Lost braces 40 | \item \code{lambda}{ Amount of shrinkage.} | ^ checkRd: (-1) fregre.pls.Rd:41: Lost braces 41 | \item \code{fdata.comp}{ Fitted object in \code{\link{fdata2pls}} function.} | ^ checkRd: (-1) fregre.pls.Rd:42: Lost braces 42 | \item \code{lm}{ Fitted object in \code{\link{lm}} function} | ^ checkRd: (-1) fregre.pls.Rd:43: Lost braces 43 | \item \code{fdataobj}{ Functional explanatory data.} | ^ checkRd: (-1) fregre.pls.Rd:44: Lost braces 44 | \item \code{y}{ Scalar response.} | ^ checkRd: (-1) fregre.pls.cv.Rd:42: Lost braces 42 | \item \code{fregre.pls}{ Fitted regression object by the best (\code{pls.opt}) components.} | ^ checkRd: (-1) fregre.pls.cv.Rd:43: Lost braces 43 | \item \code{pls.opt}{ Index of PLS components' selected.} | ^ checkRd: (-1) fregre.pls.cv.Rd:44-45: Lost braces 44 | \item \code{MSC.min}{ Minimum Model Selection Criteria (MSC) value for | ^ checkRd: (-1) fregre.pls.cv.Rd:46: Lost braces 46 | \item \code{MSC}{ Minimum Model Selection Criteria (MSC) value for \code{kmax} components.} | ^ checkRd: (-1) influence.fregre.fd.Rd:17: Lost braces 17 | \item \code{DCP}{ Cook's Distance for Prediction.} | ^ checkRd: (-1) influence.fregre.fd.Rd:18: Lost braces 18 | \item \code{DCE}{ Cook's Distance for Estimation.} | ^ checkRd: (-1) influence.fregre.fd.Rd:19: Lost braces 19 | \item \code{DP}{ \eqn{\mbox{Pe}\tilde{\mbox{n}}\mbox{a's} }{} Distance.} | ^ checkRd: (-1) influence_quan.Rd:33: Lost braces 33 | \item \code{quan.cook.for}{ Distance Cook Prediction Quantile.} | ^ checkRd: (-1) influence_quan.Rd:34: Lost braces 34 | \item \code{quan.cook.est}{ Distance Cook Estimation Quantile.} | ^ checkRd: (-1) influence_quan.Rd:35: Lost braces 35 | \item \code{quan.cook.Pena}{ Pena Distance Quantile.} | ^ checkRd: (-1) influence_quan.Rd:36: Lost braces 36 | \item \code{mues.est}{ Sample Cook generated.} | ^ checkRd: (-1) influence_quan.Rd:37: Lost braces 37 | \item \code{mues.pena}{ Sample Pena generated.} | ^ checkRd: (-1) influence_quan.Rd:38: Lost braces 38 | \item \code{beta.boot}{ Functional beta estimated by bootstrap method.} | ^ checkRd: (-1) optim.basis.Rd:46: Lost braces 46 | \item \code{gcv}{ Returns GCV values calculated for input parameters.} | ^ checkRd: (-1) optim.basis.Rd:47-49: Lost braces 47 | \item \code{fdataobj}{ Matrix of set cases with dimension (\code{n} x \code{m}), | ^ checkRd: (-1) optim.basis.Rd:50: Lost braces 50 | \item \code{fdata.est}{ Estimated \code{fdata} class object.} | ^ checkRd: (-1) optim.basis.Rd:51: Lost braces 51 | \item \code{numbasis.opt}{ \code{numbasis} value that minimizes CV or GCV method.} | ^ checkRd: (-1) optim.basis.Rd:52: Lost braces 52 | \item \code{lambda.opt}{ \code{lambda} value that minimizes CV or GCV method.} | ^ checkRd: (-1) optim.basis.Rd:53: Lost braces 53 | \item \code{basis.opt}{ \code{basis} for the minimum CV or GCV method.} | ^ checkRd: (-1) optim.basis.Rd:54: Lost braces 54 | \item \code{S.opt}{ Smoothing matrix for the minimum CV or GCV method.} | ^ checkRd: (-1) optim.basis.Rd:55: Lost braces 55 | \item \code{gcv.opt}{ Minimum of CV or GCV method.} | ^ checkRd: (-1) optim.basis.Rd:56: Lost braces 56 | \item \code{lambda}{ A roughness penalty. By default, no penalty \code{lambda=0}.} | ^ checkRd: (-1) optim.basis.Rd:57: Lost braces 57 | \item \code{numbasis}{ Number of basis to use.} | ^ checkRd: (-1) optim.basis.Rd:58-59: Lost braces 58 | \item \code{verbose}{ If \code{TRUE} information about GCV values | ^ checkRd: (-1) optim.np.Rd:59-60: Lost braces 59 | \item \code{gcv}{ GCV or CV for a vector of values of the smoothing parameter | ^ checkRd: (-1) optim.np.Rd:61: Lost braces 61 | \item \code{fdataobj}{ \code{\link{fdata}} class object.} | ^ checkRd: (-1) optim.np.Rd:62: Lost braces 62 | \item \code{fdata.est}{ Estimated \code{fdata} class object.} | ^ checkRd: (-1) optim.np.Rd:63: Lost braces 63 | \item \code{h.opt}{ \code{h} value that minimizes CV or GCV method.} | ^ checkRd: (-1) optim.np.Rd:64: Lost braces 64 | \item \code{S.opt}{ Smoothing matrix for the minimum CV or GCV method.} | ^ checkRd: (-1) optim.np.Rd:65: Lost braces 65 | \item \code{gcv.opt}{ Minimum of CV or GCV method.} | ^ checkRd: (-1) optim.np.Rd:66: Lost braces 66 | \item \code{h}{ Smoothing parameter or bandwidth.} | ^ checkRd: (-1) predict.classif.DD.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.classif.DD.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.fregre.fd.Rd:51: Lost braces 51 | \item \code{fit}{ A vector of predictions or a matrix of predictions and bounds as above} | ^ checkRd: (-1) predict.fregre.fd.Rd:52: Lost braces 52 | \item \code{se.fit}{ Associated standard error estimates of predictions} | ^ checkRd: (-1) predict.fregre.fd.Rd:53: Lost braces 53 | \item \code{residual.scale}{ Residual standard deviations} | ^ checkRd: (-1) predict.fregre.fd.Rd:54: Lost braces 54 | \item \code{df}{ Degrees of freedom for residual} | ^ checkRd: (-1) predict.fregre.lm.Rd:68-71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.fregre.lm.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.fregre.lm.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.fregre.lm.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.statistic.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.statistic.Rd:32-34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:47-48: Lost braces in \itemize; meant \describe ? checkRd: (-1) rp.flm.test.Rd:49-50: Lost braces in \itemize; meant \describe ? checkRd: (-1) rp.flm.test.Rd:51-54: Lost braces in \itemize; meant \describe ? checkRd: (-1) rp.flm.test.Rd:91-92: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:93-94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:104-105: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:107: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rp.flm.test.Rd:108: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.fregre.fd.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.fregre.fd.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summary.fregre.fd.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: LMDC.select.Rd: gam PCvM.statistic.Rd: fd classif.DD.Rd: lda, qda classif.ML.Rd: pca.fd, create.basis, rpart classif.glm.Rd: pca.fd, create.basis classif.gsam.Rd: pca.fd, create.basis fda.usc-package.Rd: gam fdata.deriv.Rd: Data2fd, deriv.fd fdata2fd.Rd: Data2fd flm.test.Rd: create.basis fregre.basis.Rd: create.bspline.basis fregre.basis.fr.Rd: linmod, create.bspline.basis fregre.glm.Rd: pca.fd, create.basis fregre.gls.Rd: corStruct, corClasses, varFunc, varFixed, varClasses, glsControl, glsObject fregre.gsam.Rd: s, te, gam, pca.fd, create.basis, summary.gam fregre.gsam.vs.Rd: s, te, gam, summary.gam fregre.lm.Rd: pca.fd, create.basis norm.fdata.Rd: fd, inprod plot.fdata.Rd: bifd predict.fregre.lm.Rd: gam semimetric.basis.Rd: create.bspline.basis, Data2fd, deriv.fd Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking examples ... [14s/14s] OK * checking PDF version of manual ... [8s/8s] OK * checking HTML version of manual ... [5s/5s] NOTE Found the following HTML validation problems: GCCV.S.html:87:32 (GCCV.S.Rd:47): Warning: trimming empty * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 4 NOTEs