* installing *source* package ‘fbati’ ...
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.5 (1)’
using C++ compiler: ‘Debian clang version 17.0.5 (1)’
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RExportGen.cpp -o RExportGen.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cgFbat.cpp -o cgFbat.o
cgFbat.cpp:40:11: warning: unused variable 'ANALYZE_ALLELE_INDEX' [-Wunused-const-variable]
   40 | const int ANALYZE_ALLELE_INDEX = 0; // First marker is the one being analyzed
      |           ^~~~~~~~~~~~~~~~~~~~
cgFbat.cpp:41:11: warning: unused variable 'CONDITIONAL_ALLELE_INDEX' [-Wunused-const-variable]
   41 | const int CONDITIONAL_ALLELE_INDEX = 1; // Second Marker is the one that we are conditioning on
      |           ^~~~~~~~~~~~~~~~~~~~~~~~
2 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c datamatrix.cpp -o datamatrix.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fbatdist.cpp -o fbatdist.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fbatge.cpp -o fbatge.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fbati.cpp -o fbati.o
clang-17  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fbati_init.c -o fbati_init.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fbatmeev.cpp -o fbatmeev.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c joint.cpp -o joint.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c nuclify.cpp -o nuclify.o
nuclify.cpp:215:11: warning: variable 'childRowSize' set but not used [-Wunused-but-set-variable]
  215 |       int childRowSize=0;  //  needed?
      |           ^
1 warning generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c random.cpp -o random.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c rmatrix.cpp -o rmatrix.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c rvector.cpp -o rvector.o
clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fbati.so RExportGen.o cgFbat.o datamatrix.o fbatdist.o fbatge.o fbati.o fbati_init.o fbatmeev.o joint.o nuclify.o random.o rmatrix.o rvector.o -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/fbati.Rcheck/00LOCK-fbati/00new/fbati/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fbati)