* installing *source* package ‘fasttreeid’ ...
** this is package ‘fasttreeid’ version ‘1.0.1’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (10)’
using C++17
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c algebra.cpp -o algebra.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c identification.cpp -o identification.o
In file included from identification.cpp:1:
In file included from ./identification.h:3:
In file included from ./algebra.h:3:
In file included from ./random.h:3:
In file included from /usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/optional:51:
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:7: warning: destructor called on non-final 'fasttreeid::Lambda' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
  166 |       __pointer->~_Tp();
      |       ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/alloc_traits.h:819:9: note: in instantiation of function template specialization 'std::_Destroy<fasttreeid::Lambda>' requested here
  819 |         { std::_Destroy(__p); }
      |                ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:615:28: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<void>>::destroy<fasttreeid::Lambda>' requested here
  615 |         allocator_traits<_Alloc>::destroy(_M_impl._M_alloc(), _M_ptr());
      |                                   ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:601:2: note: in instantiation of member function 'std::_Sp_counted_ptr_inplace<fasttreeid::Lambda, std::allocator<void>, __gnu_cxx::_S_atomic>::_M_dispose' requested here
  601 |         _Sp_counted_ptr_inplace(_Alloc __a, _Args&&... __args)
      |         ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:970:6: note: in instantiation of function template specialization 'std::_Sp_counted_ptr_inplace<fasttreeid::Lambda, std::allocator<void>, __gnu_cxx::_S_atomic>::_Sp_counted_ptr_inplace<std::shared_ptr<fasttreeid::RandomTool> &, const unsigned long &, unsigned long &>' requested here
  970 |             _Sp_cp_type(__a._M_a, std::forward<_Args>(__args)...);
      |             ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:1719:14: note: in instantiation of function template specialization 'std::__shared_count<>::__shared_count<fasttreeid::Lambda, std::allocator<void>, std::shared_ptr<fasttreeid::RandomTool> &, const unsigned long &, unsigned long &>' requested here
 1719 |         : _M_ptr(), _M_refcount(_M_ptr, __tag, std::forward<_Args>(__args)...)
      |                     ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr.h:463:4: note: in instantiation of function template specialization 'std::__shared_ptr<fasttreeid::Lambda>::__shared_ptr<std::allocator<void>, std::shared_ptr<fasttreeid::RandomTool> &, const unsigned long &, unsigned long &>' requested here
  463 |         : __shared_ptr<_Tp>(__tag, std::forward<_Args>(__args)...)
      |           ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr.h:1007:14: note: in instantiation of function template specialization 'std::shared_ptr<fasttreeid::Lambda>::shared_ptr<std::allocator<void>, std::shared_ptr<fasttreeid::RandomTool> &, const unsigned long &, unsigned long &>' requested here
 1007 |       return shared_ptr<_Tp>(_Sp_alloc_shared_tag<_Alloc>{__a},
      |              ^
identification.cpp:542:37: note: in instantiation of function template specialization 'std::make_shared<fasttreeid::Lambda, std::shared_ptr<fasttreeid::RandomTool> &, const unsigned long &, unsigned long &>' requested here
  542 |                 lambda[directed[i - 1]][i] = std::make_shared<Lambda>(randomTool, directed[i - 1], i);
      |                                                   ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:19: note: qualify call to silence this warning
  166 |       __pointer->~_Tp();
      |                   ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:7: warning: destructor called on non-final 'fasttreeid::Omega' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
  166 |       __pointer->~_Tp();
      |       ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/alloc_traits.h:819:9: note: in instantiation of function template specialization 'std::_Destroy<fasttreeid::Omega>' requested here
  819 |         { std::_Destroy(__p); }
      |                ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:615:28: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<void>>::destroy<fasttreeid::Omega>' requested here
  615 |         allocator_traits<_Alloc>::destroy(_M_impl._M_alloc(), _M_ptr());
      |                                   ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:601:2: note: in instantiation of member function 'std::_Sp_counted_ptr_inplace<fasttreeid::Omega, std::allocator<void>, __gnu_cxx::_S_atomic>::_M_dispose' requested here
  601 |         _Sp_counted_ptr_inplace(_Alloc __a, _Args&&... __args)
      |         ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:970:6: note: in instantiation of function template specialization 'std::_Sp_counted_ptr_inplace<fasttreeid::Omega, std::allocator<void>, __gnu_cxx::_S_atomic>::_Sp_counted_ptr_inplace<std::shared_ptr<fasttreeid::RandomTool> &, unsigned long &, unsigned long &>' requested here
  970 |             _Sp_cp_type(__a._M_a, std::forward<_Args>(__args)...);
      |             ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:1719:14: note: in instantiation of function template specialization 'std::__shared_count<>::__shared_count<fasttreeid::Omega, std::allocator<void>, std::shared_ptr<fasttreeid::RandomTool> &, unsigned long &, unsigned long &>' requested here
 1719 |         : _M_ptr(), _M_refcount(_M_ptr, __tag, std::forward<_Args>(__args)...)
      |                     ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr.h:463:4: note: in instantiation of function template specialization 'std::__shared_ptr<fasttreeid::Omega>::__shared_ptr<std::allocator<void>, std::shared_ptr<fasttreeid::RandomTool> &, unsigned long &, unsigned long &>' requested here
  463 |         : __shared_ptr<_Tp>(__tag, std::forward<_Args>(__args)...)
      |           ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr.h:1007:14: note: in instantiation of function template specialization 'std::shared_ptr<fasttreeid::Omega>::shared_ptr<std::allocator<void>, std::shared_ptr<fasttreeid::RandomTool> &, unsigned long &, unsigned long &>' requested here
 1007 |       return shared_ptr<_Tp>(_Sp_alloc_shared_tag<_Alloc>{__a},
      |              ^
identification.cpp:545:22: note: in instantiation of function template specialization 'std::make_shared<fasttreeid::Omega, std::shared_ptr<fasttreeid::RandomTool> &, unsigned long &, unsigned long &>' requested here
  545 |                 omega[u][v] = std::make_shared<Omega>(randomTool, u, v);
      |                                    ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:19: note: qualify call to silence this warning
  166 |       __pointer->~_Tp();
      |                   ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:7: warning: destructor called on non-final 'fasttreeid::Sigma' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
  166 |       __pointer->~_Tp();
      |       ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/alloc_traits.h:819:9: note: in instantiation of function template specialization 'std::_Destroy<fasttreeid::Sigma>' requested here
  819 |         { std::_Destroy(__p); }
      |                ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:615:28: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<void>>::destroy<fasttreeid::Sigma>' requested here
  615 |         allocator_traits<_Alloc>::destroy(_M_impl._M_alloc(), _M_ptr());
      |                                   ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:601:2: note: in instantiation of member function 'std::_Sp_counted_ptr_inplace<fasttreeid::Sigma, std::allocator<void>, __gnu_cxx::_S_atomic>::_M_dispose' requested here
  601 |         _Sp_counted_ptr_inplace(_Alloc __a, _Args&&... __args)
      |         ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:970:6: note: in instantiation of function template specialization 'std::_Sp_counted_ptr_inplace<fasttreeid::Sigma, std::allocator<void>, __gnu_cxx::_S_atomic>::_Sp_counted_ptr_inplace<unsigned long &, unsigned long &>' requested here
  970 |             _Sp_cp_type(__a._M_a, std::forward<_Args>(__args)...);
      |             ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr_base.h:1719:14: note: in instantiation of function template specialization 'std::__shared_count<>::__shared_count<fasttreeid::Sigma, std::allocator<void>, unsigned long &, unsigned long &>' requested here
 1719 |         : _M_ptr(), _M_refcount(_M_ptr, __tag, std::forward<_Args>(__args)...)
      |                     ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr.h:463:4: note: in instantiation of function template specialization 'std::__shared_ptr<fasttreeid::Sigma>::__shared_ptr<std::allocator<void>, unsigned long &, unsigned long &>' requested here
  463 |         : __shared_ptr<_Tp>(__tag, std::forward<_Args>(__args)...)
      |           ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/shared_ptr.h:1007:14: note: in instantiation of function template specialization 'std::shared_ptr<fasttreeid::Sigma>::shared_ptr<std::allocator<void>, unsigned long &, unsigned long &>' requested here
 1007 |       return shared_ptr<_Tp>(_Sp_alloc_shared_tag<_Alloc>{__a},
      |              ^
identification.cpp:553:23: note: in instantiation of function template specialization 'std::make_shared<fasttreeid::Sigma, unsigned long &, unsigned long &>' requested here
  553 |                         sigma[i][j] = std::make_shared<Sigma>(i, j);
      |                                            ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/bits/stl_construct.h:166:19: note: qualify call to silence this warning
  166 |       __pointer->~_Tp();
      |                   ^
3 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c random.cpp -o random.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c rbridge.cpp -o rbridge.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fasttreeid.so RcppExports.o algebra.o identification.o random.o rbridge.o -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/fasttreeid.Rcheck/00LOCK-fasttreeid/00new/fasttreeid/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fasttreeid)