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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(fastml) > > test_check("fastml") Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Engine-level early stopping will be applied when supported ============================================================ WARNING: 1 model(s) failed to train: ------------------------------------------------------------ - logistic_reg (glm): Detected preprocessing on the full training set during resampling. Each fold must train preprocessing exclusively on its analysis subset. ============================================================ ============================================================ WARNING: 1 model(s) failed to train: ------------------------------------------------------------ - logistic_reg (glm): Guarded resampling requires split index information (e.g., `in_id`) for every resample. ============================================================ ============================================================ WARNING: 1 model(s) failed to train: ------------------------------------------------------------ - logistic_reg (glm): Guarded resampling requires a consistent index field (e.g., `in_id`) across resamples. ============================================================ ===== fastml Model Summary ===== Task: survival Number of Models Trained: 1 -- Performance Metrics (Holdout) -- ----------------------------------------------------------------------------------------------------------- Model Engine Harrell C-index Uno's C-index Integrated Brier Score RMST diff (t<=551) Brier(t=269) ----------------------------------------------------------------------------------------------------------- cox_ph† survival 0.559 0.536 0.249 16.357 0.309 ----------------------------------------------------------------------------------------------------------- † Selected based on ibs Forming integrated rmst function... Forming integrated mean function... Forming integrated rmst function... Forming integrated mean function... [ FAIL 0 | WARN 0 | SKIP 82 | PASS 475 ] ══ Skipped tests (82) ══════════════════════════════════════════════════════════ • On CRAN (81): 'test-custom-metric-holdout.R:4:3', 'test-fastml-edge-cases.R:61:3', 'test-fastml-edge-cases.R:75:3', 'test-fastml-edge-cases.R:90:3', 'test-fastml-edge-cases.R:109:3', 'test-fastml-edge-cases.R:126:3', 'test-fastml-edge-cases.R:151:3', 'test-fastml-edge-cases.R:166:3', 'test-fastml-edge-cases.R:184:3', 'test-fastml-edge-cases.R:198:3', 'test-fastml-edge-cases.R:217:3', 'test-fastml-edge-cases.R:232:3', 'test-fastml-edge-cases.R:252:3', 'test-fastml-edge-cases.R:272:3', 'test-fastml-edge-cases.R:291:3', 'test-fastml-edge-cases.R:315:3', 'test-fastml-edge-cases.R:354:3', 'test-fastml-edge-cases.R:371:3', 'test-fastml-edge-cases.R:393:3', 'test-fastml-edge-cases.R:412:3', 'test-fastml-edge-cases.R:429:3', 'test-fastml-workflows.R:8:3', 'test-fastml-workflows.R:36:3', 'test-fastml-workflows.R:88:3', 'test-fastml-workflows.R:128:3', 'test-holdout-splitting.R:4:3', 'test-holdout-splitting.R:34:3', 'test-interaction-strength.R:20:3', 'test-interaction-strength.R:37:3', 'test-plot-ice.R:42:3', 'test-plot-ice.R:57:3', 'test-plot-ice.R:74:3', 'test-plot-ice.R:93:3', 'test-plot.R:18:3', 'test-plot.R:36:3', 'test-plot.R:54:3', 'test-plot.R:71:3', 'test-plot.R:89:3', 'test-plot.R:108:3', 'test-plot.R:125:3', 'test-plot.R:143:3', 'test-plot.R:160:3', 'test-plot.R:177:3', 'test-plot.R:195:3', 'test-plot.R:214:3', 'test-predict.R:11:3', 'test-predict.R:28:3', 'test-predict.R:48:3', 'test-predict.R:69:3', 'test-predict.R:90:3', 'test-predict.R:109:3', 'test-predict.R:129:3', 'test-predict.R:152:3', 'test-predict.R:173:3', 'test-predict.R:193:3', 'test-predict.R:213:3', 'test-predict.R:234:3', 'test-save-load-model.R:11:3', 'test-save-load-model.R:36:3', 'test-save-load-model.R:61:3', 'test-save-load-model.R:89:3', 'test-summary.R:18:3', 'test-summary.R:35:3', 'test-summary.R:53:3', 'test-summary.R:69:3', 'test-summary.R:85:3', 'test-summary.R:101:3', 'test-summary.R:118:3', 'test-summary.R:135:3', 'test-summary.R:152:3', 'test-summary.R:167:3', 'test-summary.R:183:3', 'test-summary.R:198:3', 'test-summary.R:213:3', 'test-surrogate-tree.R:20:3', 'test-surrogate-tree.R:35:3', 'test-surrogate-tree.R:50:3', 'test-utility-functions.R:116:3', 'test-utility-functions.R:142:3', 'test-utility-functions.R:168:3', 'test-utility-functions.R:194:3' • {ceterisParibus} is not installed (1): 'test-fastexplain.R:7:1' [ FAIL 0 | WARN 0 | SKIP 82 | PASS 475 ] > > proc.time() user system elapsed 331.15 4.40 335.85