* installing *source* package ‘fastei’ ...
** this is package ‘fastei’ version ‘0.0.0.7’
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation   -c RcppExports.cpp -o RcppExports.o
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c bootstrap.c -o bootstrap.o
bootstrap.c: In function ‘bootstrapA’:
bootstrap.c:133:9: warning: unused variable ‘matsize’ [-Wunused-variable]
  133 |     int matsize = wmat->cols * xmat->rows;
      |         ^~~~~~~
bootstrap.c:132:9: warning: unused variable ‘samples’ [-Wunused-variable]
  132 |     int samples = bdim * bootiter;
      |         ^~~~~~~
bootstrap.c: In function ‘bootSingleMat’:
bootstrap.c:248:9: warning: unused variable ‘matsize’ [-Wunused-variable]
  248 |     int matsize = xmat->rows;
      |         ^~~~~~~
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c dynamic_program.c -o dynamic_program.o
dynamic_program.c: In function ‘aggregateGroups’:
dynamic_program.c:483:31: warning: ‘boundaries’ may be used uninitialized [-Wmaybe-uninitialized]
  483 |             bootstrapMatrix = testBootstrap(&quality, set_method, xmat, wmat, boundaries, -1, bootiter, q_method,
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  484 |                                             p_method, convergence, log_convergence, maxIter, maxSeconds, *inputParams);
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dynamic_program.c:446:10: note: ‘boundaries’ was declared here
  446 |     int *boundaries;
      |          ^~~~~~~~~~
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c exact.c -o exact.o
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c hitAndRun.c -o hitAndRun.o
hitAndRun.c: In function ‘generateOmegaSet’:
hitAndRun.c:212:14: warning: unused variable ‘arraySize’ [-Wunused-variable]
  212 |     uint32_t arraySize = M * S;
      |              ^~~~~~~~~
hitAndRun.c: In function ‘computeQ’:
hitAndRun.c:536:20: warning: unused variable ‘qsum’ [-Wunused-variable]
  536 |             double qsum = 0;
      |                    ^~~~
hitAndRun.c: In function ‘computeQHitAndRun’:
hitAndRun.c:604:25: warning: unused variable ‘currentMatrix’ [-Wunused-variable]
  604 |                 Matrix *currentMatrix = currentSet->data[s]; // Z
      |                         ^~~~~~~~~~~~~
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c main.c -o main.o
main.c: In function ‘EMAlgoritm’:
main.c:520:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  520 |         if (i >= 1 && (fabs(newLL - oldLL) < LLconvergence || convergeMatrix(&newProbability, currentP, convergence)) ||
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c multinomial.c -o multinomial.o
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c multivariate-cdf.c -o multivariate-cdf.o
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c multivariate-pdf.c -o multivariate-pdf.o
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c utils_hash.c -o utils_hash.o
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c utils_matrix.c -o utils_matrix.o
utils_matrix.c:65:13: warning: ‘transposeMatrix’ defined but not used [-Wunused-function]
   65 | static void transposeMatrix(const double *src, int rows, int cols, double *dst)
      |             ^~~~~~~~~~~~~~~
gcc-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-stringop-truncation -c utils_multivariate.c -o utils_multivariate.o
utils_multivariate.c: In function ‘getAverageConditional’:
utils_multivariate.c:227:10: warning: unused variable ‘trans’ [-Wunused-variable]
  227 |     char trans = 'N';             // (There's no separate transpose flag in dger,
      |          ^~~~~
g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG  -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O2 -Wall -pedantic -mtune=native  -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation   -c wrapper.cpp -o wrapper.o
g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o fastei.so RcppExports.o bootstrap.o dynamic_program.o exact.o hitAndRun.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
installing to /home/hornik/tmp/CRAN_special_gcc-san/fastei.Rcheck/00LOCK-fastei/00new/fastei/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastei)